Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

28609993 .. 28611538

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGGATCGACACGTAACCAAGACAAATGCGGAGCATGGACGTTCCGGAGTATTCCAGAACTGGCCATCACGAGATAGCCAGAGTAGTCCACAATCCTTTGGCACGGAACTTGATGGGAACCGAAACTGCAACTCGAGAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGGCAGACTATTCCTATCAACGATATTGATGCTGTTGGTTGTACTGGGGATGGTGGCAACGTAGGGTACAATGAAACTGAACTTCTGAACAACCCGCTGGATTCTTATACCAAACTGCTCGAAAGGATTGATGTTCGAATCCCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

113

Amino Acids

12.32

Weight (kDa)

5.04

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	2 cut(s)	32, 266
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	65
AfaI	GTAC	3 cut(s)	214, 239, 331
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	164, 323
AluBI	AGCT	2 cut(s)	317, 326
AluI	AGCT	2 cut(s)	317, 326
AlwI	GGATC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	67
BauI	CACGAG	1 cut(s)	72
BccI	CCATC	3 cut(s)	76, 110, 215
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	68, 220
BseAI	TCCGGA	1 cut(s)	47
BseGI	GGATG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	68, 220
BseYI	CCCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	32, 266
BspANI	GGCC	1 cut(s)	67
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	68, 220
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	213, 238, 330
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	67, 81, 317, 326
CviKI_1	RGCY	4 cut(s)	67, 81, 317, 326
CviQI	GTAC	3 cut(s)	213, 238, 330
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	136
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 279
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	2 cut(s)	272, 309
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	149, 258
Hpy188III	TCNNGA	4 cut(s)	48, 58, 72, 138
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4IV	ACGT	3 cut(s)	15, 43, 231
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpySE526I	ACGT	3 cut(s)	15, 43, 231
Hsp92II	CATG	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	49, 61, 71, 95, 201, 254, 327
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	3 cut(s)	15, 43, 231
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	67
MroI	TCCGGA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	67
Msp20I	TGGCCA	1 cut(s)	67
MspA1I	CMGCKG	2 cut(s)	268, 317
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	272, 309
Ppu21I	YACGTR	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	214, 239, 331
RsaNI	GTAC	3 cut(s)	213, 238, 330
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	6 cut(s)	18, 46, 147, 234, 319, 328
SfaNI	GCATC	1 cut(s)	190
Sfr274I	CTCGAG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SsiI	CCGC	2 cut(s)	32, 266
TaiI	ACGT	3 cut(s)	18, 46, 234
TaqI	TCGA	4 cut(s)	10, 137, 291, 307
TatI	WGTACW	2 cut(s)	212, 329
TfiI	GAWTC	2 cut(s)	272, 309
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.