Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

28612544 .. 28613223

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTTGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCCAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTCGCATCTACACCTTCTCTTCATCCTACACCTCCATTTCATACTGTATATCCCCTTACAAAGAGATTCAGAGCTCCGCTGAATCCGGCGCTGCTGAGGCATGGAGAGGAAGAATTCATGATACCTATGACAGGAGCAACTAATTCAACAATGGGGCAGTACAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGATTCCAATGCGTCTCATTTGTTTAATGAAAGTACTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGCGCCAAGTCTGAAAAGGGTGTCTACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGAGGAGACGTCTGGAATGCTCCGGAGCGTCCGTGCTCCGCGTTTGTTTTCTGACAGAAGCAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

7.83

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	404
AccII	CGCG	1 cut(s)	490
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	2 cut(s)	149, 488
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	383, 458
AfaI	GTAC	2 cut(s)	233, 337
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	219, 250, 415
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	3 cut(s)	148, 353, 487
Alw26I	GTCTC	2 cut(s)	321, 449
Alw44I	GTGCAC	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	471
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	163, 385
AsuHPI	GGTGA	2 cut(s)	61, 438
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	2 cut(s)	56, 148
Bbv12I	GWGCWC	3 cut(s)	148, 353, 487
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	321, 449
BfmI	CTRYAG	1 cut(s)	32
BfoI	RGCGCY	2 cut(s)	164, 386
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	283, 384
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	383, 458
BsaJI	CCNNGG	2 cut(s)	56, 341
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	56, 341
BseGI	GGATG	3 cut(s)	22, 94, 351
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	158, 399
BseRI	GAGGAG	2 cut(s)	330, 467
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	382
BsiHKAI	GWGCWC	3 cut(s)	148, 353, 487
BsiSI	CCGG	2 cut(s)	158, 472
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	321, 449
BsmBI	CGTCTC	2 cut(s)	321, 449
BsmI	GAATGC	2 cut(s)	43, 471
Bsp1286I	GDGCHC	4 cut(s)	56, 148, 353, 487
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	292, 436
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	149, 488
BspCNI	CTCAG	2 cut(s)	159, 400
BspEI	TCCGGA	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	283, 384
BspMAI	CTGCAG	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	56, 341
BssMI	GATC	2 cut(s)	292, 436
BssNI	GRCGYC	2 cut(s)	383, 458
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	118, 432
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	2 cut(s)	383, 458
BstC8I	GCNNGC	2 cut(s)	271, 275
BstDEI	CTNAG	2 cut(s)	167, 408
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	22, 94, 351
BstFNI	CGCG	1 cut(s)	490
BstH2I	RGCGCY	2 cut(s)	164, 386
BstHHI	GCGC	2 cut(s)	163, 385
BstKTI	GATC	2 cut(s)	295, 439
BstMAI	GTCTC	2 cut(s)	321, 449
BstMBI	GATC	2 cut(s)	292, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	22, 94, 351
Cac8I	GCNNGC	2 cut(s)	271, 275
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	163, 385
CseI	GACGC	2 cut(s)	303, 466
Csp6I	GTAC	2 cut(s)	232, 336
CviAII	CATG	6 cut(s)	12, 57, 173, 190, 274, 379
CviJI	RGCY	3 cut(s)	54, 146, 284
CviKI_1	RGCY	3 cut(s)	54, 146, 284
CviQI	GTAC	2 cut(s)	232, 336
DdeI	CTNAG	2 cut(s)	167, 408
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	2 cut(s)	294, 438
DpnII	GATC	2 cut(s)	292, 436
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	56, 148
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	2 cut(s)	56, 148
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	56
Esp3I	CGTCTC	2 cut(s)	321, 449
FaeI	CATG	6 cut(s)	15, 60, 176, 193, 277, 382
FatI	CATG	6 cut(s)	11, 56, 172, 189, 273, 378
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	3 cut(s)	29, 81, 358
FriOI	GRGCYC	2 cut(s)	56, 148
Fsp4HI	GCNGC	1 cut(s)	164
GlaI	GCGC	2 cut(s)	162, 384
GluI	GCNGC	1 cut(s)	164
HaeII	RGCGCY	2 cut(s)	164, 386
HapII	CCGG	2 cut(s)	158, 472
HgaI	GACGC	2 cut(s)	303, 466
HhaI	GCGC	2 cut(s)	163, 385
Hin1I	GRCGYC	2 cut(s)	383, 458
Hin1II	CATG	6 cut(s)	15, 60, 176, 193, 277, 382
Hin6I	GCGC	2 cut(s)	161, 383
HinP1I	GCGC	2 cut(s)	161, 383
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	138, 154, 305
HpaII	CCGG	2 cut(s)	158, 472
HphI	GGTGA	2 cut(s)	61, 438
Hpy166II	GTNNAC	4 cut(s)	67, 351, 405, 428
Hpy188I	TCNGA	5 cut(s)	143, 345, 393, 436, 502
Hpy188III	TCNNGA	3 cut(s)	190, 462, 472
Hpy8I	GTNNAC	4 cut(s)	67, 351, 405, 428
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	118, 432
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	3 cut(s)	34, 277, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	167, 408
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	2 cut(s)	383, 458
Hsp92II	CATG	6 cut(s)	15, 60, 176, 193, 277, 382
HspAI	GCGC	2 cut(s)	161, 383
KasI	GGCGCC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	292, 436
LmnI	GCTCC	6 cut(s)	151, 206, 281, 474, 474, 490
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	86
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	294, 438
MboI	GATC	2 cut(s)	292, 436
MboII	GAAGA	2 cut(s)	83, 194
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	4 cut(s)	56, 148, 353, 487
MluCI	AATT	4 cut(s)	185, 214, 358, 440
Mly113I	GGCGCC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	39, 114, 162, 172, 351, 445
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	2 cut(s)	158, 472
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	2 cut(s)	43, 471
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	292, 436
NlaIII	CATG	6 cut(s)	15, 60, 176, 193, 277, 382
NlaIV	GGNNCC	2 cut(s)	283, 384
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	2 cut(s)	43, 471
PfeI	GAWTC	3 cut(s)	138, 154, 305
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	165
PluTI	GGCGCC	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	283, 384
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	233, 337
RsaNI	GTAC	2 cut(s)	232, 336
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	292, 436
ScaI	AGTACT	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	4 cut(s)	56, 148, 353, 487
SetI	ASST	7 cut(s)	25, 88, 106, 148, 199, 356, 461
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	32
SfoI	GGCGCC	1 cut(s)	384
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	4 cut(s)	185, 214, 358, 440
SsiI	CCGC	2 cut(s)	149, 488
SspDI	GGCGCC	1 cut(s)	382
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	118, 432
TaiI	ACGT	1 cut(s)	461
TasI	AATT	4 cut(s)	185, 214, 358, 440
TatI	WGTACW	2 cut(s)	231, 335
TfiI	GAWTC	3 cut(s)	138, 154, 305
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	5 cut(s)	33, 83, 101, 178, 345
TspGWI	ACGGA	1 cut(s)	470
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.