Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

64822496 .. 64824115

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGACTGATGACTCCAGGATGACTTGGATTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGGTCTTATCCCCATGGCGTATGCTTCAGGCTCGCAAAACTGATTGATGTTACATGGGATGGACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAACTCCACTGAATCCCGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATACCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATTCTTCCGTGTTGAAATATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTCTGGCAACAACAACATGGTATCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGGTAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

203

Amino Acids

22.4

Weight (kDa)

5.68

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	515
AcsI	RAATTY	2 cut(s)	296, 445
AcuI	CTGAAG	3 cut(s)	33, 79, 156
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	68, 314
AgsI	TTSAA	5 cut(s)	287, 330, 346, 361, 526
AjnI	CCWGG	2 cut(s)	17, 395
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	241
Alw44I	GTGCAC	1 cut(s)	460
ApaLI	GTGCAC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	296, 445
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	172, 549
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	41, 464
BanII	GRGCYC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	122, 596
BciT130I	CCWGG	2 cut(s)	19, 397
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	19, 270, 397
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	3 cut(s)	19, 270, 397
BmsI	GCATC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	82, 167, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 314
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	19, 397
BseDI	CCNNGG	3 cut(s)	82, 167, 452
BseGI	GGATG	3 cut(s)	27, 133, 462
BseLI	CCNNNNNNNGG	2 cut(s)	68, 314
BseMII	CTCAG	4 cut(s)	54, 265, 269, 510
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	441
BseSI	GKGCMC	2 cut(s)	41, 464
BseXI	GCAGC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	68, 314
BsmAI	GTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	41, 167, 464
Bsp143I	GATC	2 cut(s)	403, 547
Bsp19I	CCATGG	2 cut(s)	82, 167
BspCNI	CTCAG	4 cut(s)	55, 264, 270, 511
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	82, 167, 452
BssMI	GATC	2 cut(s)	403, 547
BssT1I	CCWWGG	2 cut(s)	82, 167
Bst2UI	CCWGG	2 cut(s)	19, 397
Bst4CI	ACNGT	3 cut(s)	211, 229, 543
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	102, 382, 386
BstDEI	CTNAG	5 cut(s)	63, 153, 251, 278, 519
BstDSI	CCRYGG	2 cut(s)	82, 167
BstF5I	GGATG	3 cut(s)	27, 133, 462
BstKTI	GATC	2 cut(s)	406, 550
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	403, 547
BstNI	CCWGG	2 cut(s)	19, 397
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	17, 268, 395
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	2 cut(s)	41, 464
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	427
BtgI	CCRYGG	2 cut(s)	82, 167
BtsCI	GGATG	3 cut(s)	27, 133, 462
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	3 cut(s)	102, 382, 386
CciI	TCATGA	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	7 cut(s)	83, 123, 168, 301, 385, 490, 592
CviJI	RGCY	6 cut(s)	53, 100, 165, 323, 395, 567
CviKI_1	RGCY	6 cut(s)	53, 100, 165, 323, 395, 567
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	5 cut(s)	63, 153, 251, 278, 519
DpnI	GATC	2 cut(s)	405, 549
DpnII	GATC	2 cut(s)	403, 547
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	82, 167
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	33, 79, 156
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	17, 395
EcoT14I	CCWWGG	2 cut(s)	82, 167
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	82, 167
FaeI	CATG	7 cut(s)	86, 126, 171, 304, 388, 493, 595
FatI	CATG	7 cut(s)	82, 122, 167, 300, 384, 489, 591
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	3 cut(s)	34, 140, 469
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	336
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	7 cut(s)	86, 126, 171, 304, 388, 493, 595
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	14, 31, 249, 265
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	172, 549
Hpy166II	GTNNAC	5 cut(s)	178, 462, 516, 539, 578
Hpy188I	TCNGA	3 cut(s)	254, 456, 547
Hpy188III	TCNNGA	3 cut(s)	62, 301, 498
Hpy8I	GTNNAC	5 cut(s)	178, 462, 516, 539, 578
HpyAV	CCTTC	3 cut(s)	207, 225, 281
HpyCH4III	ACNGT	3 cut(s)	211, 229, 543
HpyCH4V	TGCA	4 cut(s)	145, 188, 388, 462
HpyF3I	CTNAG	5 cut(s)	63, 153, 251, 278, 519
Hsp92II	CATG	7 cut(s)	86, 126, 171, 304, 388, 493, 595
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	403, 547
LmnI	GCTCC	2 cut(s)	317, 392
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	405, 549
MboI	GATC	2 cut(s)	403, 547
MboII	GAAGA	4 cut(s)	39, 194, 305, 342
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	3 cut(s)	41, 167, 464
MluCI	AATT	8 cut(s)	282, 296, 325, 341, 346, 445, 469, 551
MlyI	GAGTC	2 cut(s)	8, 243
MnlI	CCTC	4 cut(s)	150, 462, 484, 501
MseI	TTAA	1 cut(s)	437
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	3 cut(s)	19, 270, 397
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	2 cut(s)	19, 397
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	2 cut(s)	82, 167
NdeII	GATC	2 cut(s)	403, 547
NlaIII	CATG	7 cut(s)	86, 126, 171, 304, 388, 493, 595
NlaIV	GGNNCC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	31, 265
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	8, 243
PpsI	GAGTC	2 cut(s)	8, 243
Psp6I	CCWGG	2 cut(s)	17, 395
PspGI	CCWGG	2 cut(s)	17, 395
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	403, 547
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	8, 243
ScrFI	CCNGG	3 cut(s)	19, 270, 397
SduI	GDGCHC	3 cut(s)	41, 167, 464
SetI	ASST	6 cut(s)	136, 199, 217, 310, 325, 467
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	131
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	8 cut(s)	282, 296, 325, 341, 346, 445, 469, 551
StyD4I	CCNGG	3 cut(s)	17, 268, 395
StyI	CCWWGG	2 cut(s)	82, 167
TaaI	ACNGT	3 cut(s)	211, 229, 543
TasI	AATT	8 cut(s)	282, 296, 325, 341, 346, 445, 469, 551
TfiI	GAWTC	2 cut(s)	31, 265
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	4 cut(s)	194, 212, 289, 456
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	296, 445
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.