Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

26280900 .. 26281328

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTCCTAATTCTCAGCGTCACACTTGCTCACGCTCTCACTCTCACTCCCACGCGCCGCCACAACCTCAACCGCAGCTCATCTCCATCGACCCCAAAATCTGGCGAGCCTGCGCAGGCAACTCCGTCACCATCCCAGCTCTCCATTCTAGGGTTTACTACTTCCCCCAGGGCCACCTCGAACACTACACCTCCGGTTCATCTCATGTTCTTCTCTTTCCTCAAGTCCTCTCCAAGCCTCTCATTCTTTGTCGTATCCCTGTCGTCAACTTCCTTGCCAATCCCAGCACTGACGAGGTCTTTGCCAAGCTCCTCCTCCACCCCGTCCACCCTAGCCTCTCCCCTCACCACATCGAACTCAACGTTGCCGCAGCCCCGCTGAAGGTAGCAGAGGTGGAGAGCGAAAATGACGATGATATTGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

6.62

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccII	CGCG	1 cut(s)	56
AciI	CCGC	4 cut(s)	59, 74, 369, 377
AclI	AACGTT	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	102, 151, 382
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	79, 140, 310
AluI	AGCT	3 cut(s)	79, 140, 310
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	76, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	2 cut(s)	58, 116
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	121, 338
BbvI	GCAGC	2 cut(s)	88, 383
BccI	CCATC	2 cut(s)	95, 140
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	150, 333
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	4 cut(s)	59, 77, 369, 372
BlsI	GCNGC	4 cut(s)	60, 78, 370, 373
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	168, 169
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 151, 382
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	168, 169
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	102, 151, 382
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	302, 305
BseXI	GCAGC	2 cut(s)	88, 383
BseYI	CCCAGC	2 cut(s)	136, 284
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	102, 151, 382
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	59, 74, 369, 377
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	168, 169
Bst2UI	CCWGG	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	108, 112, 118
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	58, 116
BstMAI	GTCTC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	88, 383
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	108, 112, 118
CfoI	GCGC	2 cut(s)	58, 116
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	8
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	8 cut(s)	79, 110, 140, 174, 238, 310, 336, 374
CviKI_1	RGCY	8 cut(s)	79, 110, 140, 174, 238, 310, 336, 374
DdeI	CTNAG	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	209
FaiI	YATR	2 cut(s)	207, 427
FatI	CATG	1 cut(s)	205
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	59, 77, 369, 372
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	59, 77, 369, 372
FspBI	CTAG	2 cut(s)	150, 333
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	57, 115
GluI	GCNGC	4 cut(s)	59, 77, 369, 372
GsaI	CCCAGC	2 cut(s)	140, 288
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	2 cut(s)	58, 116
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	2 cut(s)	56, 114
HinP1I	GCGC	2 cut(s)	56, 114
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	121, 338
Hpy166II	GTNNAC	3 cut(s)	157, 268, 328
Hpy8I	GTNNAC	3 cut(s)	157, 268, 328
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	363
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	2 cut(s)	56, 114
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	9 cut(s)	88, 102, 124, 150, 155, 182, 208, 273, 298
Lsp1109I	GCAGC	2 cut(s)	88, 383
MaeI	CTAG	2 cut(s)	150, 333
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	20, 127
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	56
NlaIII	CATG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	20, 127
NsbI	TGCGCA	1 cut(s)	115
PasI	CCCWGGG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	4 cut(s)	60, 78, 370, 373
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	2 cut(s)	136, 284
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	296
SatI	GCNGC	4 cut(s)	59, 77, 369, 372
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	4 cut(s)	59, 74, 369, 377
SspMI	CTAG	2 cut(s)	150, 333
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	90, 180, 354
TasI	AATT	1 cut(s)	10
TauI	GCSGC	2 cut(s)	61, 371
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	20, 127
TseI	GCWGC	2 cut(s)	76, 371
Tsp45I	GTSAC	2 cut(s)	20, 127
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	102
XspI	CTAG	2 cut(s)	150, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.