Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 160 |
| AccI | GTMKAC | 1 cut(s) | 182 |
| AcsI | RAATTY | 1 cut(s) | 112 |
| AgsI | TTSAA | 7 cut(s) | 13, 28, 172, 193, 317, 338, 344 |
| AjnI | CCWGG | 1 cut(s) | 62 |
| AluBI | AGCT | 1 cut(s) | 410 |
| AluI | AGCT | 1 cut(s) | 410 |
| Alw21I | GWGCWC | 1 cut(s) | 131 |
| Alw44I | GTGCAC | 1 cut(s) | 127 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 410 |
| ApaLI | GTGCAC | 1 cut(s) | 127 |
| ApoI | RAATTY | 1 cut(s) | 112 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 307 |
| AsuHPI | GGTGA | 1 cut(s) | 216 |
| BaeGI | GKGCMC | 1 cut(s) | 131 |
| BanI | GGYRCC | 1 cut(s) | 160 |
| BanII | GRGCYC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 1 cut(s) | 131 |
| BccI | CCATC | 1 cut(s) | 263 |
| BciT130I | CCWGG | 1 cut(s) | 64 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BglII | AGATCT | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 64 |
| BmiI | GGNNCC | 3 cut(s) | 61, 162, 275 |
| BmrFI | CCNGG | 1 cut(s) | 64 |
| BmrI | ACTGGG | 1 cut(s) | 378 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BmuI | ACTGGG | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 2 cut(s) | 119, 164 |
| Bse1I | ACTGG | 1 cut(s) | 373 |
| BseBI | CCWGG | 1 cut(s) | 64 |
| BseDI | CCNNGG | 2 cut(s) | 119, 164 |
| BseGI | GGATG | 1 cut(s) | 129 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 373 |
| BseRI | GAGGAG | 1 cut(s) | 108 |
| BseSI | GKGCMC | 1 cut(s) | 131 |
| BshNI | GGYRCC | 1 cut(s) | 160 |
| BsiHKAI | GWGCWC | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 18, 386 |
| BsmFI | GGGAC | 2 cut(s) | 18, 386 |
| Bsp1286I | GDGCHC | 2 cut(s) | 131, 393 |
| Bsp143I | GATC | 3 cut(s) | 70, 214, 297 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspLI | GGNNCC | 3 cut(s) | 61, 162, 275 |
| BspT107I | GGYRCC | 1 cut(s) | 160 |
| BsrI | ACTGG | 1 cut(s) | 373 |
| BssECI | CCNNGG | 2 cut(s) | 119, 164 |
| BssMI | GATC | 3 cut(s) | 70, 214, 297 |
| BssT1I | CCWWGG | 1 cut(s) | 164 |
| Bst2UI | CCWGG | 1 cut(s) | 64 |
| Bst4CI | ACNGT | 2 cut(s) | 210, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 2 cut(s) | 49, 53 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstF5I | GGATG | 1 cut(s) | 129 |
| BstKTI | GATC | 3 cut(s) | 73, 217, 300 |
| BstMBI | GATC | 3 cut(s) | 70, 214, 297 |
| BstNI | CCWGG | 1 cut(s) | 64 |
| BstNSI | RCATGY | 1 cut(s) | 55 |
| BstSCI | CCNGG | 1 cut(s) | 62 |
| BstSLI | GKGCMC | 1 cut(s) | 131 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BtsCI | GGATG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 2 cut(s) | 49, 53 |
| CaiI | CAGNNNCTG | 1 cut(s) | 410 |
| CseI | GACGC | 1 cut(s) | 72 |
| CviAII | CATG | 3 cut(s) | 52, 157, 259 |
| CviJI | RGCY | 3 cut(s) | 62, 391, 410 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 391, 410 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 3 cut(s) | 72, 216, 299 |
| DpnII | GATC | 3 cut(s) | 70, 214, 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 1 cut(s) | 167 |
| Eco130I | CCWWGG | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 1 cut(s) | 393 |
| EcoRII | CCWGG | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 1 cut(s) | 393 |
| ErhI | CCWWGG | 1 cut(s) | 164 |
| FaeI | CATG | 3 cut(s) | 55, 160, 262 |
| FaiI | YATR | 6 cut(s) | 33, 53, 135, 158, 260, 386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 295, 327 |
| FaqI | GGGAC | 2 cut(s) | 18, 386 |
| FatI | CATG | 3 cut(s) | 51, 156, 258 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| FblI | GTMKAC | 1 cut(s) | 182 |
| FokI | GGATG | 1 cut(s) | 136 |
| FriOI | GRGCYC | 1 cut(s) | 393 |
| HgaI | GACGC | 1 cut(s) | 72 |
| Hin1II | CATG | 3 cut(s) | 55, 160, 262 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HphI | GGTGA | 1 cut(s) | 216 |
| Hpy166II | GTNNAC | 5 cut(s) | 129, 148, 183, 206, 245 |
| Hpy188I | TCNGA | 4 cut(s) | 123, 214, 302, 330 |
| Hpy8I | GTNNAC | 5 cut(s) | 129, 148, 183, 206, 245 |
| HpyAV | CCTTC | 1 cut(s) | 338 |
| HpyCH4III | ACNGT | 2 cut(s) | 210, 377 |
| HpyCH4V | TGCA | 3 cut(s) | 55, 129, 285 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| Hsp92II | CATG | 3 cut(s) | 55, 160, 262 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| Kzo9I | GATC | 3 cut(s) | 70, 214, 297 |
| LmnI | GCTCC | 1 cut(s) | 59 |
| LpnPI | CCDG | 9 cut(s) | 33, 41, 49, 57, 76, 240, 248, 354, 386 |
| LweI | GCATC | 1 cut(s) | 343 |
| MalI | GATC | 3 cut(s) | 72, 216, 299 |
| MboI | GATC | 3 cut(s) | 70, 214, 297 |
| MboII | GAAGA | 2 cut(s) | 184, 315 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MhlI | GDGCHC | 2 cut(s) | 131, 393 |
| MluCI | AATT | 3 cut(s) | 8, 112, 136 |
| MnlI | CCTC | 2 cut(s) | 129, 168 |
| MroXI | GAANNNNTTC | 1 cut(s) | 307 |
| MseI | TTAA | 1 cut(s) | 104 |
| MspR9I | CCNGG | 1 cut(s) | 64 |
| MvaI | CCWGG | 1 cut(s) | 64 |
| NdeII | GATC | 3 cut(s) | 70, 214, 297 |
| NlaIII | CATG | 3 cut(s) | 55, 160, 262 |
| NlaIV | GGNNCC | 3 cut(s) | 61, 162, 275 |
| NspI | RCATGY | 1 cut(s) | 55 |
| PaeI | GCATGC | 1 cut(s) | 55 |
| PdmI | GAANNNNTTC | 1 cut(s) | 307 |
| Psp6I | CCWGG | 1 cut(s) | 62 |
| PspGI | CCWGG | 1 cut(s) | 62 |
| PspN4I | GGNNCC | 3 cut(s) | 61, 162, 275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 410 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| SaqAI | TTAA | 1 cut(s) | 104 |
| Sau3AI | GATC | 3 cut(s) | 70, 214, 297 |
| ScrFI | CCNGG | 1 cut(s) | 64 |
| SduI | GDGCHC | 2 cut(s) | 131, 393 |
| SetI | ASST | 4 cut(s) | 134, 170, 349, 412 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| SmlI | CTYRAG | 1 cut(s) | 394 |
| SmoI | CTYRAG | 1 cut(s) | 394 |
| SphI | GCATGC | 1 cut(s) | 55 |
| Sse9I | AATT | 3 cut(s) | 8, 112, 136 |
| StyD4I | CCNGG | 1 cut(s) | 62 |
| StyI | CCWWGG | 1 cut(s) | 164 |
| TaaI | ACNGT | 2 cut(s) | 210, 377 |
| TaqI | TCGA | 1 cut(s) | 290 |
| TasI | AATT | 3 cut(s) | 8, 112, 136 |
| Tru1I | TTAA | 1 cut(s) | 104 |
| Tru9I | TTAA | 1 cut(s) | 104 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TspDTI | ATGAA | 1 cut(s) | 123 |
| TspRI | CASTG | 1 cut(s) | 373 |
| VneI | GTGCAC | 1 cut(s) | 127 |
| XapI | RAATTY | 1 cut(s) | 112 |
| XceI | RCATGY | 1 cut(s) | 55 |
| XmiI | GTMKAC | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 1 cut(s) | 307 |