Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

68696598 .. 68698393

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG508200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCATGGAGTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGCTCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCGGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATCCCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATTCTTCCTTGTCGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATAAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGTCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGGTAGTCCACAGTCTGATCAATTATCACCAGGTAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACGGCAACTCGACATTTGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTCAAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATGCCAAACTGCTTGAAAGGATTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

254

Amino Acids

27.92

Weight (kDa)

6.42

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	3 - 51	1e-13	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	482
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	4 cut(s)	57, 70, 265, 732
AcsI	RAATTY	2 cut(s)	263, 412
AcuI	CTGAAG	3 cut(s)	12, 65, 123
AfaI	GTAC	2 cut(s)	180, 692
AfiI	CCNNNNNNNGG	2 cut(s)	47, 281
AgsI	TTSAA	7 cut(s)	254, 297, 313, 493, 617, 638, 749
AjnI	CCWGG	3 cut(s)	235, 362, 526
AluBI	AGCT	2 cut(s)	224, 290
AluI	AGCT	2 cut(s)	224, 290
Alw21I	GWGCWC	2 cut(s)	226, 431
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	57, 70, 265, 732
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	263, 412
Asp700I	GAANNNNTTC	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	139, 516
BaeGI	GKGCMC	2 cut(s)	20, 431
BamHI	GGATCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	134, 226
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	226, 431
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	598
BciT130I	CCWGG	3 cut(s)	237, 364, 528
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	3 cut(s)	237, 364, 528
BmiI	GGNNCC	3 cut(s)	64, 361, 575
BmrFI	CCNGG	3 cut(s)	237, 364, 528
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	164, 643
BmuI	ACTGGG	1 cut(s)	678
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	68, 134, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 281
Bse1I	ACTGG	3 cut(s)	286, 673, 726
BseBI	CCWGG	3 cut(s)	237, 364, 528
BseDI	CCNNGG	3 cut(s)	68, 134, 419
BseGI	GGATG	2 cut(s)	100, 429
BseLI	CCNNNNNNNGG	2 cut(s)	47, 281
BseMII	CTCAG	4 cut(s)	33, 232, 236, 477
BseNI	ACTGG	3 cut(s)	286, 673, 726
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	2 cut(s)	20, 431
BseXI	GCAGC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	226, 431
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	47, 281
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	686
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	20, 134, 226, 431
Bsp143I	GATC	5 cut(s)	62, 270, 370, 514, 724
Bsp19I	CCATGG	2 cut(s)	68, 134
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	4 cut(s)	34, 231, 237, 478
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	64, 361, 575
BspPI	GGATC	4 cut(s)	57, 70, 265, 732
BsrI	ACTGG	3 cut(s)	286, 673, 726
BssECI	CCNNGG	3 cut(s)	68, 134, 419
BssMI	GATC	5 cut(s)	62, 270, 370, 514, 724
BssT1I	CCWWGG	2 cut(s)	68, 134
Bst2UI	CCWGG	3 cut(s)	237, 364, 528
Bst4CI	ACNGT	4 cut(s)	178, 196, 510, 677
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	349, 353
BstDEI	CTNAG	5 cut(s)	42, 120, 218, 245, 486
BstDSI	CCRYGG	2 cut(s)	68, 134
BstF5I	GGATG	2 cut(s)	100, 429
BstKTI	GATC	5 cut(s)	65, 273, 373, 517, 727
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	5 cut(s)	62, 270, 370, 514, 724
BstNI	CCWGG	3 cut(s)	237, 364, 528
BstNSI	RCATGY	1 cut(s)	355
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	235, 362, 526
BstSLI	GKGCMC	2 cut(s)	20, 431
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	3 cut(s)	62, 370, 724
BstYI	RGATCY	3 cut(s)	62, 370, 724
BsuI	GTATCC	1 cut(s)	394
BtgI	CCRYGG	2 cut(s)	68, 134
BtsCI	GGATG	2 cut(s)	100, 429
BtsIMutI	CAGTG	2 cut(s)	227, 666
Cac8I	GCNNGC	2 cut(s)	349, 353
CciI	TCATGA	1 cut(s)	267
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	179, 691
CviAII	CATG	8 cut(s)	6, 69, 90, 135, 268, 352, 457, 559
CviJI	RGCY	7 cut(s)	32, 51, 132, 224, 290, 362, 534
CviKI_1	RGCY	7 cut(s)	32, 51, 132, 224, 290, 362, 534
CviQI	GTAC	2 cut(s)	179, 691
DdeI	CTNAG	5 cut(s)	42, 120, 218, 245, 486
DpnI	GATC	5 cut(s)	64, 272, 372, 516, 726
DpnII	GATC	5 cut(s)	62, 270, 370, 514, 724
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	68, 134
Eco24I	GRGCYC	2 cut(s)	134, 226
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	12, 65, 123
EcoICRI	GAGCTC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	235, 362, 526
EcoT14I	CCWWGG	2 cut(s)	68, 134
EcoT38I	GRGCYC	2 cut(s)	134, 226
ErhI	CCWWGG	2 cut(s)	68, 134
FaeI	CATG	8 cut(s)	9, 72, 93, 138, 271, 355, 460, 562
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	8 cut(s)	5, 68, 89, 134, 267, 351, 456, 558
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	107, 436
FriOI	GRGCYC	2 cut(s)	134, 226
Fsp4HI	GCNGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	303
Hin1II	CATG	8 cut(s)	9, 72, 93, 138, 271, 355, 460, 562
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	10, 216, 232
HphI	GGTGA	2 cut(s)	139, 516
Hpy166II	GTNNAC	5 cut(s)	145, 429, 483, 506, 545
Hpy188I	TCNGA	6 cut(s)	221, 423, 514, 602, 630, 711
Hpy188III	TCNNGA	3 cut(s)	41, 268, 465
Hpy8I	GTNNAC	5 cut(s)	145, 429, 483, 506, 545
HpyAV	CCTTC	4 cut(s)	52, 174, 192, 248
HpyCH4III	ACNGT	4 cut(s)	178, 196, 510, 677
HpyCH4V	TGCA	4 cut(s)	155, 355, 429, 666
HpyF3I	CTNAG	5 cut(s)	42, 120, 218, 245, 486
Hsp92II	CATG	8 cut(s)	9, 72, 93, 138, 271, 355, 460, 562
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	62, 270, 370, 514, 724
LmnI	GCTCC	3 cut(s)	229, 284, 359
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	2 cut(s)	164, 643
MabI	ACCWGGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	5 cut(s)	64, 272, 372, 516, 726
MboI	GATC	5 cut(s)	62, 270, 370, 514, 724
MboII	GAAGA	5 cut(s)	18, 161, 272, 309, 615
MflI	RGATCY	3 cut(s)	62, 370, 724
MhlI	GDGCHC	4 cut(s)	20, 134, 226, 431
MluCI	AATT	8 cut(s)	249, 263, 292, 308, 313, 412, 436, 518
MlyI	GAGTC	2 cut(s)	19, 210
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	3 cut(s)	117, 429, 468
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	1 cut(s)	404
MspR9I	CCNGG	3 cut(s)	237, 364, 528
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	237, 364, 528
NcoI	CCATGG	2 cut(s)	68, 134
NdeII	GATC	5 cut(s)	62, 270, 370, 514, 724
NlaIII	CATG	8 cut(s)	9, 72, 93, 138, 271, 355, 460, 562
NlaIV	GGNNCC	3 cut(s)	64, 361, 575
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	2 cut(s)	18, 210
PpsI	GAGTC	2 cut(s)	18, 210
PshAI	GACNNNNGTC	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	235, 362, 526
PspGI	CCWGG	3 cut(s)	235, 362, 526
PspN4I	GGNNCC	3 cut(s)	64, 361, 575
PsuI	RGATCY	3 cut(s)	62, 370, 724
RsaI	GTAC	2 cut(s)	180, 692
RsaNI	GTAC	2 cut(s)	179, 691
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	5 cut(s)	62, 270, 370, 514, 724
SchI	GAGTC	2 cut(s)	19, 210
ScrFI	CCNGG	3 cut(s)	237, 364, 528
SduI	GDGCHC	4 cut(s)	20, 134, 226, 431
SetI	ASST	9 cut(s)	87, 103, 166, 184, 226, 292, 434, 532, 649
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	164, 643
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	8 cut(s)	249, 263, 292, 308, 313, 412, 436, 518
SsiI	CCGC	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	3 cut(s)	235, 362, 526
StyI	CCWWGG	2 cut(s)	68, 134
TaaI	ACNGT	4 cut(s)	178, 196, 510, 677
TaqI	TCGA	2 cut(s)	326, 590
TasI	AATT	8 cut(s)	249, 263, 292, 308, 313, 412, 436, 518
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	234, 673
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	111, 161, 179, 256, 711
TspRI	CASTG	2 cut(s)	234, 673
VneI	GTGCAC	1 cut(s)	427
XapI	RAATTY	2 cut(s)	263, 412
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.