Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

1729309 .. 1733875

Gene Structure 4567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCCTCCTAATTCTCACCGTCACACTCGCTCTCGCTCTCACTCTCACTCTCACGCGCCTCCTCCGCCTCAGCCGCCGCAGCTCGTCTCCATCGACCCCAAAATCTGGCGAGCCTGCGCCGGCAACTCCGTCACCATCCCCACTCTCCATTCTAGGGTTTACTACTTCCCCCAAGGCCACCTCGAACACTCCACCTCCTCCTCCTCCGCTCCGGTTCTTCTCTCCCCTCTCGTCCTCTCCAAGCCTCTCATTCTCTGCCGCATCGCCGCCGTCCAGTTCCTCGCCGATCCCACCACCGACGAGGTCCTCGCCAAGCTCCTCCTCCATCCTGTTCACTCCGGACTCTCCCCTCACCACCGCGAACTGAGCGCCGCCGCCGCGGCTGAGGAGGGAGAGGAGGAGGACGACGGCGGCGATAGGGTGGTGTCGTTCGCTAAGATCTTGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGTGCCGAGGTTTTGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACCCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGCGGGACTCCTCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCGTCGCCGGCGACTCTGTGGTGTTCATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGACCGTGAGGGCGAGCGCCGGCGGTGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAACGTTCTGGAGGTGACGGGTTTAAGACGAGGCTTTCGGCAGAGGCTGTGGCGGAGGCTGCCGAGATGGGGGCGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCGTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCGGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACTGTATTTCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGACTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

439

Amino Acids

48.48

Weight (kDa)

7.08

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	144 - 246	6.2e-23	B3 DNA binding domain
BRWD_AD	PF25313	294 - 393	6.7e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	311 - 394	6.1e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	759
Acc36I	ACCTGC	2 cut(s)	573, 759
AccB7I	CCANNNNNTGG	2 cut(s)	105, 636
AccBSI	CCGCTC	1 cut(s)	209
AccII	CGCG	4 cut(s)	56, 360, 380, 603
AccIII	TCCGGA	2 cut(s)	338, 1069
AclI	AACGTT	1 cut(s)	808
AclWI	GGATC	3 cut(s)	281, 1086, 1099
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	1 cut(s)	1290
AcuI	CTGAAG	3 cut(s)	812, 1094, 1152
AfaI	GTAC	2 cut(s)	719, 1209
AfiI	CCNNNNNNNGG	9 cut(s)	105, 154, 636, 708, 873, 917, 1076, 1088, 1308
AgsI	TTSAA	1 cut(s)	967
AjnI	CCWGG	3 cut(s)	525, 1025, 1262
AluBI	AGCT	7 cut(s)	82, 316, 699, 777, 917, 1251, 1317
AluI	AGCT	7 cut(s)	82, 316, 699, 777, 917, 1251, 1317
Alw21I	GWGCWC	3 cut(s)	701, 779, 1253
Alw26I	GTCTC	3 cut(s)	91, 1004, 1235
AlwI	GGATC	3 cut(s)	281, 1086, 1099
AlwNI	CAGNNNCTG	1 cut(s)	851
Aor13HI	TCCGGA	2 cut(s)	338, 1069
AoxI	GGCC	5 cut(s)	175, 924, 1002, 1059, 1079
ApeKI	GCWGC	3 cut(s)	79, 863, 1314
ApoI	RAATTY	1 cut(s)	1290
ArsI	GACNNNNNNTTYG	4 cut(s)	823, 855, 875, 907
AspLEI	GCGC	5 cut(s)	58, 119, 371, 752, 880
AspS9I	GGNCC	5 cut(s)	304, 541, 735, 924, 1079
AsuHPI	GGTGA	9 cut(s)	8, 124, 344, 550, 619, 770, 830, 949, 1168
AvaII	GGWCC	3 cut(s)	304, 541, 735
BaeGI	GKGCMC	1 cut(s)	1049
BalI	TGGCCA	1 cut(s)	1004
BamHI	GGATCC	1 cut(s)	1091
BanII	GRGCYC	4 cut(s)	701, 779, 1163, 1253
BarI	GAAGNNNNNNTAC	2 cut(s)	1200, 1232
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	3 cut(s)	701, 779, 1253
BbvCI	CCTCAGC	2 cut(s)	69, 384
BbvI	GCAGC	2 cut(s)	91, 850
BccI	CCATC	5 cut(s)	98, 143, 333, 865, 994
BceAI	ACGGC	5 cut(s)	254, 424, 586, 874, 996
BciT130I	CCWGG	3 cut(s)	527, 1027, 1264
BcoDI	GTCTC	3 cut(s)	91, 1004, 1235
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	1139
BfoI	RGCGCY	2 cut(s)	372, 753
BfuAI	ACCTGC	2 cut(s)	573, 759
BglI	GCCNNNNNGGC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	527, 1027, 1264
Bme18I	GGWCC	3 cut(s)	304, 541, 735
BmgT120I	GGNCC	5 cut(s)	304, 541, 735, 924, 1079
BmiI	GGNNCC	1 cut(s)	1093
BmrFI	CCNGG	3 cut(s)	527, 1027, 1264
BmsI	GCATC	4 cut(s)	270, 445, 651, 1193
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	3 cut(s)	658, 685, 834
Bpu10I	CCTNAGC	2 cut(s)	69, 384
Bpu1102I	GCTNAGC	1 cut(s)	531
BsaJI	CCNNGG	9 cut(s)	172, 378, 485, 601, 611, 1005, 1082, 1097, 1163
BsaWI	WCCGGW	4 cut(s)	211, 338, 1069, 1308
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 154, 636, 708, 873, 917, 1076, 1088, 1308
Bse118I	RCCGGY	5 cut(s)	119, 538, 632, 671, 752
Bse1I	ACTGG	1 cut(s)	274
BseAI	TCCGGA	2 cut(s)	338, 1069
BseBI	CCWGG	3 cut(s)	527, 1027, 1264
BseDI	CCNNGG	9 cut(s)	172, 378, 485, 601, 611, 1005, 1082, 1097, 1163
BseGI	GGATG	5 cut(s)	135, 325, 993, 1035, 1129
BseLI	CCNNNNNNNGG	9 cut(s)	105, 154, 636, 708, 873, 917, 1076, 1088, 1308
BseMII	CTCAG	5 cut(s)	83, 356, 375, 522, 1263
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	91, 850
BseYI	CCCAGC	2 cut(s)	917, 983
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	4 cut(s)	56, 360, 380, 603
BshFI	GGCC	5 cut(s)	177, 926, 1004, 1061, 1081
BsiHKAI	GWGCWC	3 cut(s)	701, 779, 1253
BsiSI	CCGG	9 cut(s)	120, 212, 339, 539, 633, 672, 753, 1070, 1309
BslFI	GGGAC	2 cut(s)	596, 619
BslI	CCNNNNNNNGG	9 cut(s)	105, 154, 636, 708, 873, 917, 1076, 1088, 1308
BsmAI	GTCTC	3 cut(s)	91, 1004, 1235
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	596, 619
BsmI	GAATGC	1 cut(s)	1150
BsnI	GGCC	5 cut(s)	177, 926, 1004, 1061, 1081
Bsp1286I	GDGCHC	5 cut(s)	701, 779, 1049, 1163, 1253
Bsp13I	TCCGGA	2 cut(s)	338, 1069
Bsp143I	GATC	3 cut(s)	286, 438, 1091
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	3 cut(s)	1005, 1097, 1163
BspANI	GGCC	5 cut(s)	177, 926, 1004, 1061, 1081
BspCNI	CTCAG	5 cut(s)	82, 357, 376, 523, 1264
BspEI	TCCGGA	2 cut(s)	338, 1069
BspFNI	CGCG	4 cut(s)	56, 360, 380, 603
BspHI	TCATGA	2 cut(s)	690, 1294
BspLI	GGNNCC	1 cut(s)	1093
BspMAI	CTGCAG	1 cut(s)	1143
BspMI	ACCTGC	2 cut(s)	573, 759
BspPI	GGATC	3 cut(s)	281, 1086, 1099
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	5 cut(s)	119, 538, 632, 671, 752
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	5 cut(s)	119, 538, 632, 671, 752
BssECI	CCNNGG	9 cut(s)	172, 378, 485, 601, 611, 1005, 1082, 1097, 1163
BssMI	GATC	3 cut(s)	286, 438, 1091
BssT1I	CCWWGG	5 cut(s)	172, 1005, 1082, 1097, 1163
Bst2UI	CCWGG	3 cut(s)	527, 1027, 1264
Bst4CI	ACNGT	4 cut(s)	20, 739, 1207, 1225
Bst6I	CTCTTC	1 cut(s)	1203
BstAPI	GCANNNNNTGC	1 cut(s)	886
BstC8I	GCNNGC	6 cut(s)	111, 115, 121, 673, 748, 754
BstDEI	CTNAG	7 cut(s)	69, 365, 384, 435, 531, 1149, 1272
BstDSI	CCRYGG	5 cut(s)	378, 601, 1005, 1097, 1163
BstF5I	GGATG	5 cut(s)	135, 325, 993, 1035, 1129
BstFNI	CGCG	4 cut(s)	56, 360, 380, 603
BstH2I	RGCGCY	2 cut(s)	372, 753
BstHHI	GCGC	5 cut(s)	58, 119, 371, 752, 880
BstKTI	GATC	3 cut(s)	289, 441, 1094
BstMAI	GTCTC	3 cut(s)	91, 1004, 1235
BstMBI	GATC	3 cut(s)	286, 438, 1091
BstNI	CCWGG	3 cut(s)	527, 1027, 1264
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	3 cut(s)	525, 1025, 1262
BstSFI	CTRYAG	1 cut(s)	1139
BstSLI	GKGCMC	1 cut(s)	1049
BstUI	CGCG	4 cut(s)	56, 360, 380, 603
BstV1I	GCAGC	2 cut(s)	91, 850
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	2 cut(s)	438, 1091
BstYI	RGATCY	2 cut(s)	438, 1091
BsuRI	GGCC	5 cut(s)	177, 926, 1004, 1061, 1081
BtgI	CCRYGG	5 cut(s)	378, 601, 1005, 1097, 1163
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	5 cut(s)	135, 325, 993, 1035, 1129
BtsIMutI	CAGTG	1 cut(s)	1254
BveI	ACCTGC	2 cut(s)	573, 759
Cac8I	GCNNGC	6 cut(s)	111, 115, 121, 673, 748, 754
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	2 cut(s)	690, 1294
CfoI	GCGC	5 cut(s)	58, 119, 371, 752, 880
Cfr10I	RCCGGY	5 cut(s)	119, 538, 632, 671, 752
Cfr13I	GGNCC	5 cut(s)	304, 541, 735, 924, 1079
Cfr42I	CCGCGG	2 cut(s)	381, 604
CpoI	CGGWCCG	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	718, 1208
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CspI	CGGWCCG	1 cut(s)	735
CviAII	CATG	7 cut(s)	691, 886, 1006, 1098, 1119, 1164, 1295
CviQI	GTAC	2 cut(s)	718, 1208
DdeI	CTNAG	7 cut(s)	69, 365, 384, 435, 531, 1149, 1272
DpnI	GATC	3 cut(s)	288, 440, 1093
DpnII	GATC	3 cut(s)	286, 438, 1091
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	1 cut(s)	1203
EarI	CTCTTC	1 cut(s)	1203
EciI	GGCGGA	4 cut(s)	54, 578, 748, 872
Ecl136II	GAGCTC	3 cut(s)	699, 777, 1251
Eco130I	CCWWGG	5 cut(s)	172, 1005, 1082, 1097, 1163
Eco24I	GRGCYC	4 cut(s)	701, 779, 1163, 1253
Eco47I	GGWCC	3 cut(s)	304, 541, 735
Eco53kI	GAGCTC	3 cut(s)	699, 777, 1251
Eco57I	CTGAAG	3 cut(s)	812, 1094, 1152
EcoICRI	GAGCTC	3 cut(s)	699, 777, 1251
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	1290
EcoRII	CCWGG	3 cut(s)	525, 1025, 1262
EcoT14I	CCWWGG	5 cut(s)	172, 1005, 1082, 1097, 1163
EcoT38I	GRGCYC	4 cut(s)	701, 779, 1163, 1253
ErhI	CCWWGG	5 cut(s)	172, 1005, 1082, 1097, 1163
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	7 cut(s)	694, 889, 1009, 1101, 1122, 1167, 1298
FaqI	GGGAC	2 cut(s)	596, 619
FatI	CATG	7 cut(s)	690, 885, 1005, 1097, 1118, 1163, 1294
FauI	CCCGC	2 cut(s)	519, 596
FokI	GGATG	5 cut(s)	122, 312, 1000, 1042, 1136
FriOI	GRGCYC	4 cut(s)	701, 779, 1163, 1253
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	5 cut(s)	57, 118, 370, 751, 879
GsaI	CCCAGC	2 cut(s)	921, 987
GsuI	CTGGAG	3 cut(s)	658, 685, 834
HaeII	RGCGCY	2 cut(s)	372, 753
HaeIII	GGCC	5 cut(s)	177, 926, 1004, 1061, 1081
HapII	CCGG	9 cut(s)	120, 212, 339, 539, 633, 672, 753, 1070, 1309
HhaI	GCGC	5 cut(s)	58, 119, 371, 752, 880
Hin1II	CATG	7 cut(s)	694, 889, 1009, 1101, 1122, 1167, 1298
Hin6I	GCGC	5 cut(s)	56, 117, 369, 750, 878
HinP1I	GCGC	5 cut(s)	56, 117, 369, 750, 878
HincII	GTYRAC	1 cut(s)	1174
HindII	GTYRAC	1 cut(s)	1174
HinfI	GANTC	9 cut(s)	342, 445, 500, 607, 677, 993, 1019, 1243, 1259
HpaII	CCGG	9 cut(s)	120, 212, 339, 539, 633, 672, 753, 1070, 1309
HphI	GGTGA	9 cut(s)	8, 124, 344, 550, 619, 770, 830, 949, 1168
Hpy166II	GTNNAC	3 cut(s)	160, 334, 1174
Hpy188I	TCNGA	5 cut(s)	454, 615, 799, 912, 1248
Hpy188III	TCNNGA	9 cut(s)	339, 442, 544, 691, 702, 813, 997, 1070, 1295
Hpy8I	GTNNAC	3 cut(s)	160, 334, 1174
Hpy99I	CGWCG	4 cut(s)	302, 410, 671, 725
HpyAV	CCTTC	7 cut(s)	459, 934, 952, 961, 1081, 1203, 1221
HpyCH4III	ACNGT	4 cut(s)	20, 739, 1207, 1225
HpyCH4IV	ACGT	2 cut(s)	720, 808
HpyCH4V	TGCA	3 cut(s)	568, 1141, 1184
HpyF3I	CTNAG	7 cut(s)	69, 365, 384, 435, 531, 1149, 1272
HpySE526I	ACGT	2 cut(s)	720, 808
Hsp92II	CATG	7 cut(s)	694, 889, 1009, 1101, 1122, 1167, 1298
HspAI	GCGC	5 cut(s)	56, 117, 369, 750, 878
Kpn2I	TCCGGA	2 cut(s)	338, 1069
KroI	GCCGGC	3 cut(s)	119, 671, 752
KroNI	GCCGGC	3 cut(s)	121, 673, 754
KspI	CCGCGG	2 cut(s)	381, 604
Kzo9I	GATC	3 cut(s)	286, 438, 1091
LmnI	GCTCC	8 cut(s)	214, 321, 639, 696, 704, 774, 1256, 1311
Lsp1109I	GCAGC	2 cut(s)	91, 850
LweI	GCATC	4 cut(s)	270, 445, 651, 1193
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	720, 808
MaeIII	GTNAC	5 cut(s)	20, 130, 556, 818, 1114
MalI	GATC	3 cut(s)	288, 440, 1093
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	3 cut(s)	286, 438, 1091
MboII	GAAGA	4 cut(s)	209, 1047, 1190, 1299
MflI	RGATCY	2 cut(s)	438, 1091
MhlI	GDGCHC	5 cut(s)	701, 779, 1049, 1163, 1253
MlsI	TGGCCA	1 cut(s)	1004
MluCI	AATT	2 cut(s)	10, 1290
MluNI	TGGCCA	1 cut(s)	1004
MlyI	GAGTC	8 cut(s)	336, 439, 494, 601, 671, 1002, 1013, 1237
MmeI	TCCRAC	1 cut(s)	777
Mox20I	TGGCCA	1 cut(s)	1004
MreI	CGCCGGCG	2 cut(s)	671, 752
MroI	TCCGGA	2 cut(s)	338, 1069
MroNI	GCCGGC	3 cut(s)	119, 671, 752
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	2 cut(s)	519, 828
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	2 cut(s)	380, 603
MspI	CCGG	9 cut(s)	120, 212, 339, 539, 633, 672, 753, 1070, 1309
MspR9I	CCNGG	3 cut(s)	527, 1027, 1264
Mva1269I	GAATGC	1 cut(s)	1150
MvaI	CCWGG	3 cut(s)	527, 1027, 1264
MvnI	CGCG	4 cut(s)	56, 360, 380, 603
NaeI	GCCGGC	3 cut(s)	121, 673, 754
NcoI	CCATGG	3 cut(s)	1005, 1097, 1163
NdeII	GATC	3 cut(s)	286, 438, 1091
NgoMIV	GCCGGC	3 cut(s)	119, 671, 752
NlaIII	CATG	7 cut(s)	694, 889, 1009, 1101, 1122, 1167, 1298
NlaIV	GGNNCC	1 cut(s)	1093
NmeAIII	GCCGAG	2 cut(s)	510, 892
NmuCI	GTSAC	4 cut(s)	20, 130, 556, 818
NspI	RCATGY	1 cut(s)	889
PagI	TCATGA	2 cut(s)	690, 1294
PaqCI	CACCTGC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 411, 672
PctI	GAATGC	1 cut(s)	1150
PdiI	GCCGGC	3 cut(s)	121, 673, 754
PfeI	GAWTC	1 cut(s)	1259
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	2 cut(s)	105, 636
PfoI	TCCNGGA	2 cut(s)	1025, 1262
PleI	GAGTC	8 cut(s)	336, 439, 494, 601, 671, 1001, 1013, 1237
PpsI	GAGTC	8 cut(s)	336, 439, 494, 601, 671, 1001, 1013, 1237
PpuMI	RGGWCCY	1 cut(s)	304
Psp124BI	GAGCTC	3 cut(s)	701, 779, 1253
Psp1406I	AACGTT	1 cut(s)	808
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	525, 1025, 1262
PspFI	CCCAGC	2 cut(s)	917, 983
PspGI	CCWGG	3 cut(s)	525, 1025, 1262
PspN4I	GGNNCC	1 cut(s)	1093
PspPI	GGNCC	5 cut(s)	304, 541, 735, 924, 1079
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	1143
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	438, 1091
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	719, 1209
RsaNI	GTAC	2 cut(s)	718, 1208
Rsr2I	CGGWCCG	1 cut(s)	735
RsrII	CGGWCCG	1 cut(s)	735
SacI	GAGCTC	3 cut(s)	701, 779, 1253
SacII	CCGCGG	2 cut(s)	381, 604
SaqAI	TTAA	2 cut(s)	519, 828
Sau3AI	GATC	3 cut(s)	286, 438, 1091
Sau96I	GGNCC	5 cut(s)	304, 541, 735, 924, 1079
SchI	GAGTC	8 cut(s)	336, 439, 494, 601, 671, 1002, 1013, 1237
ScrFI	CCNGG	3 cut(s)	527, 1027, 1264
SduI	GDGCHC	5 cut(s)	701, 779, 1049, 1163, 1253
SfaNI	GCATC	4 cut(s)	270, 445, 651, 1193
SfcI	CTRYAG	1 cut(s)	1139
Sfr303I	CCGCGG	2 cut(s)	381, 604
SgrAI	CRCCGGYG	2 cut(s)	671, 752
SgrBI	CCGCGG	2 cut(s)	381, 604
SinI	GGWCC	3 cut(s)	304, 541, 735
Sse9I	AATT	2 cut(s)	10, 1290
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	3 cut(s)	701, 779, 1253
StyD4I	CCNGG	3 cut(s)	525, 1025, 1262
StyI	CCWWGG	5 cut(s)	172, 1005, 1082, 1097, 1163
TaaI	ACNGT	4 cut(s)	20, 739, 1207, 1225
TaiI	ACGT	2 cut(s)	723, 811
TaqI	TCGA	3 cut(s)	93, 183, 503
TasI	AATT	2 cut(s)	10, 1290
TfiI	GAWTC	1 cut(s)	1259
Tru1I	TTAA	2 cut(s)	519, 828
Tru9I	TTAA	2 cut(s)	519, 828
TscAI	CASTG	1 cut(s)	1261
TseFI	GTSAC	4 cut(s)	20, 130, 556, 818
TseI	GCWGC	3 cut(s)	79, 863, 1314
Tsp45I	GTSAC	4 cut(s)	20, 130, 556, 818
TspDTI	ATGAA	5 cut(s)	679, 1140, 1190, 1208, 1283
TspGWI	ACGGA	2 cut(s)	118, 544
TspRI	CASTG	1 cut(s)	1261
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	2 cut(s)	105, 636
VpaK11BI	GGWCC	3 cut(s)	304, 541, 735
XapI	RAATTY	1 cut(s)	1290
XceI	RCATGY	1 cut(s)	889
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.