Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

64357062 .. 64358987

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTTGTCGCTGGCGACTCTGTGGTGTTCATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTGAGGCGGACCGTGAGGGCGAGCGCCAGCGGTGTCTGCGGTAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAAGTGACGGCTTTAAGACTAAGCTTTCGGCTGAGGCTGTGGCGGAGGCTGCGGAGATGGCGGTGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGGTGGGTGGGCCGACTTTGTGGTGAAGGCAGAAGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTATCTTCCGCCTTTGTTCCGGAGAATGTGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACATTGTTGCATCAACACCTTCTCTTCATACTATACCTTCGCTTCATACTGTATTTCCCCCCACAAAGAGATTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATCGAGAGGAAGAATTCATGATACTTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACCTTTTTCCTGCTGGCATGCAGGGAGCCAGGCCAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAAGTCCTTTGGCAACAATAACATGGTGCTAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

295

Amino Acids

32.65

Weight (kDa)

8.4

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD_AD	PF25313	69 - 174	1.5e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	91 - 174	1.1e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	7 cut(s)	73, 96, 105, 197, 206, 215, 399
AclWI	GGATC	2 cut(s)	426, 439
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	632, 781
AcuI	CTGAAG	3 cut(s)	152, 434, 492
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	48, 257, 428
AgsI	TTSAA	6 cut(s)	307, 666, 682, 697, 841, 862
AjnI	CCWGG	3 cut(s)	365, 604, 731
AluBI	AGCT	5 cut(s)	39, 117, 178, 593, 659
AluI	AGCT	5 cut(s)	39, 117, 178, 593, 659
Alw21I	GWGCWC	4 cut(s)	41, 119, 595, 800
Alw26I	GTCTC	1 cut(s)	344
Alw44I	GTGCAC	1 cut(s)	796
AlwI	GGATC	2 cut(s)	426, 439
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	3 cut(s)	264, 342, 734
ApaLI	GTGCAC	1 cut(s)	796
ApeKI	GCWGC	3 cut(s)	203, 610, 656
ApoI	RAATTY	2 cut(s)	632, 781
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 215, 247
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	75, 264
AsuHPI	GGTGA	3 cut(s)	79, 289, 508
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	2 cut(s)	389, 800
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	431
BanII	GRGCYC	4 cut(s)	41, 119, 503, 595
Bbv12I	GWGCWC	4 cut(s)	41, 119, 595, 800
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	190, 597, 668
BccI	CCATC	2 cut(s)	205, 334
BceAI	ACGGC	3 cut(s)	178, 214, 336
BciT130I	CCWGG	3 cut(s)	367, 606, 733
BciVI	GTATCC	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	763
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	3 cut(s)	204, 611, 657
BlsI	GCNGC	3 cut(s)	205, 612, 658
Bme1390I	CCNGG	3 cut(s)	367, 606, 733
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 264
BmiI	GGNNCC	2 cut(s)	433, 730
BmrFI	CCNGG	3 cut(s)	367, 606, 733
BmsI	GCATC	1 cut(s)	533
BpmI	CTGGAG	2 cut(s)	25, 349
Bpu10I	CCTNAGC	2 cut(s)	186, 833
BsaJI	CCNNGG	6 cut(s)	345, 422, 437, 503, 605, 788
BsaWI	WCCGGW	2 cut(s)	409, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 257, 428
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	3 cut(s)	367, 606, 733
BseDI	CCNNGG	6 cut(s)	345, 422, 437, 503, 605, 788
BseGI	GGATG	4 cut(s)	333, 375, 469, 798
BseLI	CCNNNNNNNGG	3 cut(s)	48, 257, 428
BseMII	CTCAG	3 cut(s)	177, 605, 846
BseRI	GAGGAG	4 cut(s)	49, 155, 352, 777
BseSI	GKGCMC	2 cut(s)	389, 800
BseXI	GCAGC	3 cut(s)	190, 597, 668
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	266, 344, 736
BsiHKAI	GWGCWC	4 cut(s)	41, 119, 595, 800
BsiSI	CCGG	2 cut(s)	410, 651
BslI	CCNNNNNNNGG	3 cut(s)	48, 257, 428
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	266, 344, 736
Bsp1286I	GDGCHC	6 cut(s)	41, 119, 389, 503, 595, 800
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	431, 739
Bsp19I	CCATGG	3 cut(s)	345, 437, 503
BspACI	CCGC	7 cut(s)	73, 96, 105, 197, 206, 215, 399
BspANI	GGCC	3 cut(s)	266, 344, 736
BspCNI	CTCAG	3 cut(s)	178, 606, 847
BspEI	TCCGGA	1 cut(s)	409
BspHI	TCATGA	2 cut(s)	30, 636
BspLI	GGNNCC	2 cut(s)	433, 730
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	2 cut(s)	426, 439
BssECI	CCNNGG	6 cut(s)	345, 422, 437, 503, 605, 788
BssMI	GATC	2 cut(s)	431, 739
BssT1I	CCWWGG	4 cut(s)	345, 422, 437, 503
Bst2UI	CCWGG	3 cut(s)	367, 606, 733
Bst4CI	ACNGT	3 cut(s)	79, 565, 879
Bst6I	CTCTTC	2 cut(s)	543, 836
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	5 cut(s)	13, 88, 94, 718, 722
BstDEI	CTNAG	6 cut(s)	174, 186, 489, 614, 833, 855
BstDSI	CCRYGG	3 cut(s)	345, 437, 503
BstF5I	GGATG	4 cut(s)	333, 375, 469, 798
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	434, 742
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	431, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 203, 212, 226
BstNI	CCWGG	3 cut(s)	367, 606, 733
BstNSI	RCATGY	2 cut(s)	229, 724
BstSCI	CCNGG	3 cut(s)	365, 604, 731
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	2 cut(s)	389, 800
BstV1I	GCAGC	3 cut(s)	190, 597, 668
BstX2I	RGATCY	2 cut(s)	431, 739
BstYI	RGATCY	2 cut(s)	431, 739
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	266, 344, 736
BtgI	CCRYGG	3 cut(s)	345, 437, 503
BtsCI	GGATG	4 cut(s)	333, 375, 469, 798
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	5 cut(s)	13, 88, 94, 718, 722
CciI	TCATGA	2 cut(s)	30, 636
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	75, 264
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	58
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	9 cut(s)	31, 226, 346, 438, 459, 504, 637, 721, 826
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	6 cut(s)	174, 186, 489, 614, 833, 855
DpnI	GATC	2 cut(s)	433, 741
DpnII	GATC	2 cut(s)	431, 739
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	543, 836
EarI	CTCTTC	2 cut(s)	543, 836
EciI	GGCGGA	3 cut(s)	88, 212, 388
Ecl136II	GAGCTC	3 cut(s)	39, 117, 593
Eco130I	CCWWGG	4 cut(s)	345, 422, 437, 503
Eco24I	GRGCYC	4 cut(s)	41, 119, 503, 595
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	3 cut(s)	39, 117, 593
Eco57I	CTGAAG	3 cut(s)	152, 434, 492
EcoICRI	GAGCTC	3 cut(s)	39, 117, 593
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	365, 604, 731
EcoT14I	CCWWGG	4 cut(s)	345, 422, 437, 503
EcoT38I	GRGCYC	4 cut(s)	41, 119, 503, 595
ErhI	CCWWGG	4 cut(s)	345, 422, 437, 503
FaeI	CATG	9 cut(s)	34, 229, 349, 441, 462, 507, 640, 724, 829
FatI	CATG	9 cut(s)	30, 225, 345, 437, 458, 503, 636, 720, 825
Fnu4HI	GCNGC	3 cut(s)	204, 611, 657
FokI	GGATG	4 cut(s)	340, 382, 476, 805
FriOI	GRGCYC	4 cut(s)	41, 119, 503, 595
Fsp4HI	GCNGC	3 cut(s)	204, 611, 657
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	204, 611, 657
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	25, 349
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	266, 344, 736
HapII	CCGG	2 cut(s)	410, 651
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	9 cut(s)	34, 229, 349, 441, 462, 507, 640, 724, 829
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	2 cut(s)	514, 852
HindII	GTYRAC	2 cut(s)	514, 852
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	17, 333, 359, 585, 601
HpaII	CCGG	2 cut(s)	410, 651
HphI	GGTGA	3 cut(s)	79, 289, 508
Hpy166II	GTNNAC	4 cut(s)	514, 798, 852, 875
Hpy188I	TCNGA	5 cut(s)	139, 252, 590, 792, 883
Hpy188III	TCNNGA	7 cut(s)	31, 42, 153, 337, 410, 623, 637
Hpy8I	GTNNAC	4 cut(s)	514, 798, 852, 875
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	7 cut(s)	140, 274, 292, 301, 421, 543, 561
HpyCH4III	ACNGT	3 cut(s)	79, 565, 879
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	220, 481, 524, 724, 798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 203, 212, 226
HpyF3I	CTNAG	6 cut(s)	174, 186, 489, 614, 833, 855
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	9 cut(s)	34, 229, 349, 441, 462, 507, 640, 724, 829
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	431, 739
LmnI	GCTCC	6 cut(s)	36, 44, 114, 598, 653, 728
Lsp1109I	GCAGC	3 cut(s)	190, 597, 668
LweI	GCATC	1 cut(s)	533
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	158, 454
MalI	GATC	2 cut(s)	433, 741
MboI	GATC	2 cut(s)	431, 739
MboII	GAAGA	4 cut(s)	387, 530, 641, 853
MflI	RGATCY	2 cut(s)	431, 739
MhlI	GDGCHC	6 cut(s)	41, 119, 389, 503, 595, 800
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	4 cut(s)	632, 661, 677, 781
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	11, 342, 353
MmeI	TCCRAC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	344
MroI	TCCGGA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	3 cut(s)	168, 773, 886
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	2 cut(s)	410, 651
MspR9I	CCNGG	3 cut(s)	367, 606, 733
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	3 cut(s)	367, 606, 733
MwoI	GCNNNNNNNGC	4 cut(s)	102, 203, 212, 226
NcoI	CCATGG	3 cut(s)	345, 437, 503
NdeII	GATC	2 cut(s)	431, 739
NlaIII	CATG	9 cut(s)	34, 229, 349, 441, 462, 507, 640, 724, 829
NlaIV	GGNNCC	2 cut(s)	433, 730
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	229, 724
PaeI	GCATGC	1 cut(s)	724
PagI	TCATGA	2 cut(s)	30, 636
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	585, 601
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	205, 612, 658
PleI	GAGTC	3 cut(s)	11, 341, 353
PpsI	GAGTC	3 cut(s)	11, 341, 353
PsiI	TTATAA	1 cut(s)	647
Psp124BI	GAGCTC	3 cut(s)	41, 119, 595
Psp6I	CCWGG	3 cut(s)	365, 604, 731
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	365, 604, 731
PspN4I	GGNNCC	2 cut(s)	433, 730
PspPI	GGNCC	2 cut(s)	75, 264
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	431, 739
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SacI	GAGCTC	3 cut(s)	41, 119, 595
SaqAI	TTAA	3 cut(s)	168, 773, 886
SatI	GCNGC	3 cut(s)	204, 611, 657
Sau3AI	GATC	2 cut(s)	431, 739
Sau96I	GGNCC	2 cut(s)	75, 264
SchI	GAGTC	3 cut(s)	11, 342, 353
ScrFI	CCNGG	3 cut(s)	367, 606, 733
SduI	GDGCHC	6 cut(s)	41, 119, 389, 503, 595, 800
SfaNI	GCATC	1 cut(s)	533
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	75
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	4 cut(s)	632, 661, 677, 781
SsiI	CCGC	7 cut(s)	73, 96, 105, 197, 206, 215, 399
SstI	GAGCTC	3 cut(s)	41, 119, 595
StyD4I	CCNGG	3 cut(s)	365, 604, 731
StyI	CCWWGG	4 cut(s)	345, 422, 437, 503
TaaI	ACNGT	3 cut(s)	79, 565, 879
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	622
TasI	AATT	4 cut(s)	632, 661, 677, 781
TfiI	GAWTC	2 cut(s)	585, 601
Tru1I	TTAA	3 cut(s)	168, 773, 886
Tru9I	TTAA	3 cut(s)	168, 773, 886
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	203, 610, 656
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	19, 480, 530, 548, 625, 792
TspRI	CASTG	1 cut(s)	603
VneI	GTGCAC	1 cut(s)	796
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	2 cut(s)	632, 781
XceI	RCATGY	2 cut(s)	229, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.