Rmu_sc0004799.1_g000003

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004799.1
Physical Location & Seq
Forward (+)
13181 .. 14329
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004799.1_g000003.1.cds

Sequence Viewer

Length: 1149 bp
atgcctcccaattctcaccgtcacactcgctctcgttctcattctcactctcacgcgcctccgccgccgcagctcgtctccatcgaccccaaaatctggcgagcctgcgccggcaactccgtcaccatccccactctccattctagggtttactacttcccccaaggccacctcgaacactccacctcctcctcctccgctccggttcttctctcccctctcgtcctctcccagcccctcattctctgccgcatcgccgccgtccagttcctcgctgatcccaccaccgacgaggtcctcgccaagctcctcctccatcctgttcactccggactctcccctcaccaccgcgaactcagcgccgccgccgcggaggaggagcaggaggaggacgacgacggcggcgatagggtggtgtcgttcgctaagatcttgactccttccgatgctaacaatggcggtggtttctctgtcccgaggttctgtgctgactcgattttcccgccgcttaactaccaggctgagccgccggtccagacgctctccgtcaccgacctgcacggtggcgtttgggacttccgccacatctaccgcgggactccccggaggcacttgctcaccaccggctggagcaagttcgtcaatcacaagatgctcgtcgccggcgactccgtggtgtttatgaggagctccagaggtggggagatgtacgtcggggtaaggcggaccgtgagggcgagcgccggcggtgattgcggcaggtggagctctcacattgggctgaagtcggaggaggaacgttctggaggtgacgggtttaagacgaggctttcggcggaggctgtggcggaggctgccgagatggcggcgcaggacatgccgtttgaggtggtgtattatccgaaagctgggtgggccgactttgtggtgaaggcagaggtggtggagaaggcattgaaggtgttttggacggctgggatgagagtcaagatggccatggagactgatgactcgtccaggatgacttggtttcagggcactctgtcttccgcctttgttccggagaatgggccttggaagggatccccatggcgtatgcttcaggtatttcatttctctcctcagcttttggctttgaatttacattaa

Protein Analysis

382

Amino Acids

42.08

Weight (kDa)

6.83

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 750
Acc36I ACCTGC 2 cut(s) 564, 750
AccB7I CCANNNNNTGG 2 cut(s) 96, 627
AccBSI CCGCTC 1 cut(s) 200
AccII CGCG 4 cut(s) 56, 351, 371, 594
AccIII TCCGGA 2 cut(s) 329, 1060
AclI AACGTT 1 cut(s) 799
AclWI GGATC 3 cut(s) 272, 1077, 1090
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 1 cut(s) 1138
AcuI CTGAAG 2 cut(s) 803, 1085
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 7 cut(s) 96, 145, 627, 699, 908, 1067, 1079
AgsI TTSAA 2 cut(s) 958, 1138
AjnI CCWGG 2 cut(s) 516, 1016
AluBI AGCT 6 cut(s) 73, 307, 690, 768, 908, 1126
AluI AGCT 6 cut(s) 73, 307, 690, 768, 908, 1126
Alw21I GWGCWC 2 cut(s) 692, 770
Alw26I GTCTC 2 cut(s) 82, 995
AlwI GGATC 3 cut(s) 272, 1077, 1090
Ama87I CYCGRG 1 cut(s) 475
Aor13HI TCCGGA 2 cut(s) 329, 1060
AoxI GGCC 4 cut(s) 166, 915, 993, 1070
ApeKI GCWGC 2 cut(s) 70, 854
ApoI RAATTY 1 cut(s) 1138
ArsI GACNNNNNNTTYG 4 cut(s) 814, 846, 866, 898
AspLEI GCGC 5 cut(s) 58, 110, 362, 743, 871
AspS9I GGNCC 5 cut(s) 295, 532, 726, 915, 1070
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 8 cut(s) 8, 115, 335, 541, 610, 761, 821, 940
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 3 cut(s) 295, 532, 726
BaeGI GKGCMC 1 cut(s) 1040
BalI TGGCCA 1 cut(s) 995
BamHI GGATCC 1 cut(s) 1082
BanII GRGCYC 2 cut(s) 692, 770
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 2 cut(s) 692, 770
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 2 cut(s) 82, 841
BccI CCATC 5 cut(s) 89, 134, 324, 856, 985
BceAI ACGGC 4 cut(s) 245, 415, 865, 987
BciT130I CCWGG 2 cut(s) 518, 1018
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 82, 995
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 2 cut(s) 363, 744
BfuAI ACCTGC 2 cut(s) 564, 750
BglI GCCNNNNNGGC 1 cut(s) 863
BglII AGATCT 1 cut(s) 429
BlpI GCTNAGC 1 cut(s) 522
Bme1390I CCNGG 3 cut(s) 518, 604, 1018
Bme18I GGWCC 3 cut(s) 295, 532, 726
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 5 cut(s) 295, 532, 726, 915, 1070
BmiI GGNNCC 1 cut(s) 1084
BmrFI CCNGG 3 cut(s) 518, 604, 1018
BmsI GCATC 3 cut(s) 261, 436, 642
BpiI GAAGAC 1 cut(s) 1038
BpmI CTGGAG 3 cut(s) 649, 676, 825
Bpu10I CCTNAGC 1 cut(s) 1122
Bpu1102I GCTNAGC 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 9 cut(s) 163, 369, 476, 592, 602, 672, 996, 1073, 1088
BsaWI WCCGGW 3 cut(s) 202, 329, 1060
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 7 cut(s) 96, 145, 627, 699, 908, 1067, 1079
Bse118I RCCGGY 5 cut(s) 110, 529, 623, 662, 743
Bse1I ACTGG 1 cut(s) 265
BseAI TCCGGA 2 cut(s) 329, 1060
BseBI CCWGG 2 cut(s) 518, 1018
BseDI CCNNGG 9 cut(s) 163, 369, 476, 592, 602, 672, 996, 1073, 1088
BseGI GGATG 4 cut(s) 126, 316, 984, 1026
BseLI CCNNNNNNNGG 7 cut(s) 96, 145, 627, 699, 908, 1067, 1079
BseMII CTCAG 3 cut(s) 370, 513, 1136
BseNI ACTGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 1040
BseXI GCAGC 2 cut(s) 82, 841
BseYI CCCAGC 3 cut(s) 231, 908, 974
BsgI GTGCAG 1 cut(s) 542
Bsh1236I CGCG 4 cut(s) 56, 351, 371, 594
BshFI GGCC 4 cut(s) 168, 917, 995, 1072
BsiHKAI GWGCWC 2 cut(s) 692, 770
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 9 cut(s) 111, 203, 330, 530, 604, 624, 663, 744, 1061
BslFI GGGAC 3 cut(s) 458, 587, 610
BslI CCNNNNNNNGG 7 cut(s) 96, 145, 627, 699, 908, 1067, 1079
BsmAI GTCTC 2 cut(s) 82, 995
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 3 cut(s) 458, 587, 610
BsnI GGCC 4 cut(s) 168, 917, 995, 1072
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 692, 770, 1040
Bsp13I TCCGGA 2 cut(s) 329, 1060
Bsp143I GATC 3 cut(s) 277, 429, 1082
Bsp1720I GCTNAGC 1 cut(s) 522
Bsp19I CCATGG 2 cut(s) 996, 1088
BspANI GGCC 4 cut(s) 168, 917, 995, 1072
BspCNI CTCAG 3 cut(s) 369, 514, 1135
BspEI TCCGGA 2 cut(s) 329, 1060
BspFNI CGCG 4 cut(s) 56, 351, 371, 594
BspLI GGNNCC 1 cut(s) 1084
BspMI ACCTGC 2 cut(s) 564, 750
BspPI GGATC 3 cut(s) 272, 1077, 1090
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 5 cut(s) 110, 529, 623, 662, 743
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 5 cut(s) 110, 529, 623, 662, 743
BssECI CCNNGG 9 cut(s) 163, 369, 476, 592, 602, 672, 996, 1073, 1088
BssMI GATC 3 cut(s) 277, 429, 1082
BssT1I CCWWGG 4 cut(s) 163, 996, 1073, 1088
Bst2UI CCWGG 2 cut(s) 518, 1018
Bst4CI ACNGT 3 cut(s) 20, 563, 730
BstAPI GCANNNNNTGC 1 cut(s) 877
BstC8I GCNNGC 6 cut(s) 102, 106, 112, 664, 739, 745
BstDEI CTNAG 4 cut(s) 356, 426, 522, 1122
BstDSI CCRYGG 5 cut(s) 369, 592, 672, 996, 1088
BstF5I GGATG 4 cut(s) 126, 316, 984, 1026
BstFNI CGCG 4 cut(s) 56, 351, 371, 594
BstH2I RGCGCY 2 cut(s) 363, 744
BstHHI GCGC 5 cut(s) 58, 110, 362, 743, 871
BstKTI GATC 3 cut(s) 280, 432, 1085
BstMAI GTCTC 2 cut(s) 82, 995
BstMBI GATC 3 cut(s) 277, 429, 1082
BstNI CCWGG 2 cut(s) 518, 1018
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 3 cut(s) 516, 602, 1016
BstSLI GKGCMC 1 cut(s) 1040
BstUI CGCG 4 cut(s) 56, 351, 371, 594
BstV1I GCAGC 2 cut(s) 82, 841
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 429, 1082
BstYI RGATCY 2 cut(s) 429, 1082
BsuRI GGCC 4 cut(s) 168, 917, 995, 1072
BtgI CCRYGG 5 cut(s) 369, 592, 672, 996, 1088
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 4 cut(s) 126, 316, 984, 1026
BveI ACCTGC 2 cut(s) 564, 750
Cac8I GCNNGC 6 cut(s) 102, 106, 112, 664, 739, 745
CfoI GCGC 5 cut(s) 58, 110, 362, 743, 871
Cfr10I RCCGGY 5 cut(s) 110, 529, 623, 662, 743
Cfr13I GGNCC 5 cut(s) 295, 532, 726, 915, 1070
Cfr42I CCGCGG 2 cut(s) 372, 595
CpoI CGGWCCG 1 cut(s) 726
CseI GACGC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 709
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CspI CGGWCCG 1 cut(s) 726
CviAII CATG 3 cut(s) 877, 997, 1089
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 4 cut(s) 356, 426, 522, 1122
DpnI GATC 3 cut(s) 279, 431, 1084
DpnII GATC 3 cut(s) 277, 429, 1082
EaeI YGGCCR 1 cut(s) 993
EciI GGCGGA 6 cut(s) 51, 569, 739, 851, 863, 1039
Ecl136II GAGCTC 2 cut(s) 690, 768
Eco130I CCWWGG 4 cut(s) 163, 996, 1073, 1088
Eco24I GRGCYC 2 cut(s) 692, 770
Eco47I GGWCC 3 cut(s) 295, 532, 726
Eco53kI GAGCTC 2 cut(s) 690, 768
Eco57I CTGAAG 2 cut(s) 803, 1085
Eco88I CYCGRG 1 cut(s) 475
EcoICRI GAGCTC 2 cut(s) 690, 768
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 516, 1016
EcoT14I CCWWGG 4 cut(s) 163, 996, 1073, 1088
EcoT38I GRGCYC 2 cut(s) 692, 770
ErhI CCWWGG 4 cut(s) 163, 996, 1073, 1088
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 880, 1000, 1092
FaiI YATR 5 cut(s) 683, 878, 998, 1090, 1097
FaqI GGGAC 3 cut(s) 458, 587, 610
FatI CATG 3 cut(s) 876, 996, 1088
FauI CCCGC 2 cut(s) 510, 587
FokI GGATG 4 cut(s) 113, 303, 991, 1033
FriOI GRGCYC 2 cut(s) 692, 770
FspBI CTAG 1 cut(s) 144
GlaI GCGC 5 cut(s) 57, 109, 361, 742, 870
GsaI CCCAGC 3 cut(s) 235, 912, 978
GsuI CTGGAG 3 cut(s) 649, 676, 825
HaeII RGCGCY 2 cut(s) 363, 744
HaeIII GGCC 4 cut(s) 168, 917, 995, 1072
HapII CCGG 9 cut(s) 111, 203, 330, 530, 604, 624, 663, 744, 1061
HgaI GACGC 1 cut(s) 547
HhaI GCGC 5 cut(s) 58, 110, 362, 743, 871
Hin1II CATG 3 cut(s) 880, 1000, 1092
Hin6I GCGC 5 cut(s) 56, 108, 360, 741, 869
HinP1I GCGC 5 cut(s) 56, 108, 360, 741, 869
HinfI GANTC 7 cut(s) 333, 436, 491, 598, 668, 984, 1010
HpaII CCGG 9 cut(s) 111, 203, 330, 530, 604, 624, 663, 744, 1061
HphI GGTGA 8 cut(s) 8, 115, 335, 541, 610, 761, 821, 940
Hpy166II GTNNAC 2 cut(s) 151, 325
Hpy188I TCNGA 3 cut(s) 445, 790, 903
Hpy188III TCNNGA 8 cut(s) 330, 433, 475, 535, 693, 804, 988, 1061
Hpy8I GTNNAC 2 cut(s) 151, 325
Hpy99I CGWCG 5 cut(s) 293, 398, 401, 662, 716
HpyAV CCTTC 5 cut(s) 450, 925, 943, 952, 1072
HpyCH4III ACNGT 3 cut(s) 20, 563, 730
HpyCH4IV ACGT 2 cut(s) 711, 799
HpyCH4V TGCA 1 cut(s) 559
HpyF3I CTNAG 4 cut(s) 356, 426, 522, 1122
HpySE526I ACGT 2 cut(s) 711, 799
Hsp92II CATG 3 cut(s) 880, 1000, 1092
HspAI GCGC 5 cut(s) 56, 108, 360, 741, 869
Kpn2I TCCGGA 2 cut(s) 329, 1060
KroI GCCGGC 3 cut(s) 110, 662, 743
KroNI GCCGGC 3 cut(s) 112, 664, 745
KspI CCGCGG 2 cut(s) 372, 595
Kzo9I GATC 3 cut(s) 277, 429, 1082
LmnI GCTCC 7 cut(s) 205, 312, 379, 630, 687, 695, 765
Lsp1109I GCAGC 2 cut(s) 82, 841
LweI GCATC 3 cut(s) 261, 436, 642
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 711, 799
MaeIII GTNAC 4 cut(s) 20, 121, 547, 809
MalI GATC 3 cut(s) 279, 431, 1084
MbiI CCGCTC 1 cut(s) 200
MboI GATC 3 cut(s) 277, 429, 1082
MboII GAAGA 2 cut(s) 200, 1038
MflI RGATCY 2 cut(s) 429, 1082
MhlI GDGCHC 3 cut(s) 692, 770, 1040
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 2 cut(s) 10, 1138
MluNI TGGCCA 1 cut(s) 995
MlyI GAGTC 7 cut(s) 327, 430, 485, 592, 662, 993, 1004
MmeI TCCRAC 1 cut(s) 768
Mox20I TGGCCA 1 cut(s) 995
MreI CGCCGGCG 2 cut(s) 662, 743
MroI TCCGGA 2 cut(s) 329, 1060
MroNI GCCGGC 3 cut(s) 110, 662, 743
MscI TGGCCA 1 cut(s) 995
MseI TTAA 3 cut(s) 510, 819, 1147
Msp20I TGGCCA 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 371, 594
MspI CCGG 9 cut(s) 111, 203, 330, 530, 604, 624, 663, 744, 1061
MspR9I CCNGG 3 cut(s) 518, 604, 1018
MvaI CCWGG 2 cut(s) 518, 1018
MvnI CGCG 4 cut(s) 56, 351, 371, 594
NaeI GCCGGC 3 cut(s) 112, 664, 745
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 2 cut(s) 996, 1088
NdeII GATC 3 cut(s) 277, 429, 1082
NgoMIV GCCGGC 3 cut(s) 110, 662, 743
NlaIII CATG 3 cut(s) 880, 1000, 1092
NlaIV GGNNCC 1 cut(s) 1084
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 4 cut(s) 20, 121, 547, 809
NspI RCATGY 1 cut(s) 880
PaqCI CACCTGC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 402, 663
PdiI GCCGGC 3 cut(s) 112, 664, 745
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 96, 627
PfoI TCCNGGA 1 cut(s) 1016
PleI GAGTC 7 cut(s) 327, 430, 485, 592, 662, 992, 1004
PpsI GAGTC 7 cut(s) 327, 430, 485, 592, 662, 992, 1004
PpuMI RGGWCCY 1 cut(s) 295
Psp124BI GAGCTC 2 cut(s) 692, 770
Psp1406I AACGTT 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 516, 1016
PspFI CCCAGC 3 cut(s) 231, 908, 974
PspGI CCWGG 2 cut(s) 516, 1016
PspN4I GGNNCC 1 cut(s) 1084
PspPI GGNCC 5 cut(s) 295, 532, 726, 915, 1070
PspPPI RGGWCCY 1 cut(s) 295
PsuI RGATCY 2 cut(s) 429, 1082
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
Rsr2I CGGWCCG 1 cut(s) 726
RsrII CGGWCCG 1 cut(s) 726
SacI GAGCTC 2 cut(s) 692, 770
SacII CCGCGG 2 cut(s) 372, 595
SaqAI TTAA 3 cut(s) 510, 819, 1147
Sau3AI GATC 3 cut(s) 277, 429, 1082
Sau96I GGNCC 5 cut(s) 295, 532, 726, 915, 1070
SchI GAGTC 7 cut(s) 327, 430, 485, 592, 662, 993, 1004
ScrFI CCNGG 3 cut(s) 518, 604, 1018
SduI GDGCHC 3 cut(s) 692, 770, 1040
SfaNI GCATC 3 cut(s) 261, 436, 642
Sfr303I CCGCGG 2 cut(s) 372, 595
SgrAI CRCCGGYG 2 cut(s) 662, 743
SgrBI CCGCGG 2 cut(s) 372, 595
SinI GGWCC 3 cut(s) 295, 532, 726
Sse9I AATT 2 cut(s) 10, 1138
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 2 cut(s) 692, 770
StyD4I CCNGG 3 cut(s) 516, 602, 1016
StyI CCWWGG 4 cut(s) 163, 996, 1073, 1088
TaaI ACNGT 3 cut(s) 20, 563, 730
TaiI ACGT 2 cut(s) 714, 802
TaqI TCGA 3 cut(s) 84, 174, 494
TasI AATT 2 cut(s) 10, 1138
Tru1I TTAA 3 cut(s) 510, 819, 1147
Tru9I TTAA 3 cut(s) 510, 819, 1147
TseFI GTSAC 4 cut(s) 20, 121, 547, 809
TseI GCWGC 2 cut(s) 70, 854
Tsp45I GTSAC 4 cut(s) 20, 121, 547, 809
TspDTI ATGAA 1 cut(s) 1100
TspGWI ACGGA 3 cut(s) 109, 535, 661
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 2 cut(s) 96, 627
VpaK11BI GGWCC 3 cut(s) 295, 532, 726
XapI RAATTY 1 cut(s) 1138
XceI RCATGY 1 cut(s) 880
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.