Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

55011266 .. 55014346

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG464600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATACCTATAACCGGAGCAGCGAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCAGATGTGCACCTATAATTCCTTTGGCAACAACAACGTGGTGCCAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCAAAACTGCAACTTGAGAAAGGTTGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGGAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAAGTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

175

Amino Acids

18.88

Weight (kDa)

4.85

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	25, 145
AfaI	GTAC	2 cut(s)	425, 520
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	9 cut(s)	30, 46, 61, 205, 226, 350, 371, 482, 512
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	506, 515
AluI	AGCT	2 cut(s)	506, 515
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	465
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	25, 145
Asp700I	GAANNNNTTC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	94, 195, 308
BmrFI	CCNGG	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	406, 459
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	167, 210, 516
BseNI	ACTGG	2 cut(s)	406, 459
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	103, 247, 457
BspCNI	CTCAG	3 cut(s)	166, 211, 515
BspLI	GGNNCC	3 cut(s)	94, 195, 308
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	406, 459
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	3 cut(s)	103, 247, 457
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	243, 410
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	3 cut(s)	153, 219, 502
BstKTI	GATC	3 cut(s)	106, 250, 460
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	103, 247, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	103, 457
BstYI	RGATCY	2 cut(s)	103, 457
BsuI	GTATCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	82, 86
Csp6I	GTAC	2 cut(s)	424, 519
CviAII	CATG	2 cut(s)	85, 292
CviJI	RGCY	4 cut(s)	95, 267, 506, 515
CviKI_1	RGCY	4 cut(s)	95, 267, 506, 515
CviQI	GTAC	2 cut(s)	424, 519
DdeI	CTNAG	3 cut(s)	153, 219, 502
DpnI	GATC	3 cut(s)	105, 249, 459
DpnII	GATC	3 cut(s)	103, 247, 457
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	88, 295
FaiI	YATR	7 cut(s)	11, 66, 86, 168, 293, 419, 468
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	84, 291
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	88, 295
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	5 cut(s)	162, 216, 239, 278, 437
Hpy188I	TCNGA	4 cut(s)	156, 247, 363, 444
Hpy8I	GTNNAC	5 cut(s)	162, 216, 239, 278, 437
HpyCH4III	ACNGT	2 cut(s)	243, 410
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	88, 162, 318, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	153, 219, 502
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	88, 295
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	103, 247, 457
LmnI	GCTCC	2 cut(s)	17, 92
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	189
MalI	GATC	3 cut(s)	105, 249, 459
MboI	GATC	3 cut(s)	103, 247, 457
MboII	GAAGA	2 cut(s)	217, 348
MflI	RGATCY	2 cut(s)	103, 457
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	25, 41, 145, 169, 251
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	162, 201, 371
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	3 cut(s)	103, 247, 457
NlaIII	CATG	2 cut(s)	88, 295
NlaIV	GGNNCC	3 cut(s)	94, 195, 308
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	94, 195, 308
PsuI	RGATCY	2 cut(s)	103, 457
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	425, 520
RsaNI	GTAC	2 cut(s)	424, 519
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	103, 247, 457
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	8 cut(s)	10, 167, 192, 203, 333, 382, 508, 517
SfaNI	GCATC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	5 cut(s)	25, 41, 145, 169, 251
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	243, 410
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	496
TasI	AATT	5 cut(s)	25, 41, 145, 169, 251
TatI	WGTACW	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	156, 444
TspRI	CASTG	1 cut(s)	406
VneI	GTGCAC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	25, 145
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.