Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

43348455 .. 43352055

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1359400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGCCTCCGCCTCATGGCCGTTCGATCGACCCCAAAGTCTGGCGCGCCTGCGCCGGAAACTCCGTCCAAATCCCCACCCTCAACTCTAGGGTTTACTACTTCCCTCAGGGCCACCTCGAGCAATCCTCCCCCTCCTCCGCTGCGCCTGTCCTCCTCTCCCCTCTCCTCCTCTCCAAGCCTCTCATTCTCTGCCGGATCTCCGACCTCCGCTTCCTCGCTGACCCCACTACCGACGAGGTCTTCGCCAAGCTGCTTCTCGTCCCAATTCCCAATGAGTTCCCCAGCATCGAGCCGCCCAATGGCGACAAACTCGACGCCGACGGTAATGGGGACTTGGAACGACAGGATGACAGAGTCTTTTCGTTCGCGAAGATACTGACGCCTTCGGATGCTCACAATGGGGGTGGATTCTCTGTTCCGAAGTTCTGCGCGGACACCATCTTTCCTCCGCTTAACTTCCAGGCCGACCCGCCGATCCAGGCGCTCTTCCTCACCGACCTCCACGGCGTCGTTTGGGAATTCCGGCACATATACAGGGGTACTCCGAGACGGCACTTGCTCACCACTGGCTGGAGCAAGTTCGTCAACCACAAGATGCTCGTCGCCGGTGACTCCGTCGTCTTCATGAGGAACGGGAGGGGAGAGATGTTCATCGGCGTCCGTCGCGCAGTCAGGGCCAGCGCCAGCTCTGACTGCGCCAGGTGGAGCTATCACATTGGAGGCGGAGCGACGAACTCGATGAGGCTGAAGACAGAGGATCAGGACTGTTCAGGAAGGAAGGTAATGTCCGCGGAGGCCGTGGCCGAAGTGGCGGAGATGGCGGCGGAGGGGAAGCCGTTTGAGGTGGTGTATTATCCAAAAGCGGGGTGGTGGGACTTTGTGGTGAAGTCTGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTGAAGTTGGCTATGGAGACGGAGGACTCGTCCCGGATGACTTGGTTTCAGGGCACTCTGTCGATGGCTTCGGTACCGGACAATGGACCTTGGCAAGGCTCACCCTGGCGCATGCTTCAGGTTACATGGGACGAACCTGAAGCTCTGCACAATGCTAAGAGGGTGAGCCCGTGGCAAGTCGAATTTGTTGGATCAACACCTTCAATTCATACAACGTTTTGCCCCACAAAGAGATTCAGAGCTCCTCTGACTCATGGGCTGTTGATCAATGCAGAGGAAGAATTCTTCTTTCCTATGACAGGAGCAGCTAATTTAGCAATGGGGCCATTTAGTGCATCCTTGTTGAACTACAATTTTCCTGCGGGCATGCAGGGAGCCAGGCAAGATACATTCTCTGTATCTAATCTATCCCACTTGTTAAGTGAAAACAGTCCTCAGGCGTGCACTTACAATTCCTTTGGCAACAATGAGGTGCCAAAGCTGAAGAGGGTATGTACTGAGTTGAACATTGGTAGTTCACAGTCTGACGAATTGTCACCAGATAGCCAGAGTAGTGTGGCATCCTTTGGGATGGAACTTGATGGAAACCGGTTGCAGACAAAGGTTGGCACAAGTTCCTTTCAGCTGTTTGGTAAGATTATTCATACAAACCAGTCTGTTGAAGGTGGTTCTGATGATGTTGGTTGCACCGAGGACAGTGGCAACAAAGAGTACAATGTAGCAGAAGGAGGGCACAACCATCTGGATCTTAATTTTACCGAACTTCTTGATAGGATTGATATTAAATGTCAAAAAACCTCAGCTGTTGATTCTTGTACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

588

Amino Acids

64.67

Weight (kDa)

5.72

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	122 - 223	1.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	203 - 376	5.5e-10	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	293 - 376	1.2e-27	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	35, 617
Acc65I	GGTACC	1 cut(s)	1012
AccB1I	GGYRCC	2 cut(s)	1012, 1411
AccB7I	CCANNNNNTGG	2 cut(s)	39, 570
AccII	CGCG	5 cut(s)	45, 368, 431, 666, 791
AclI	AACGTT	1 cut(s)	1154
AclWI	GGATC	5 cut(s)	203, 469, 765, 1138, 1692
AcoI	YGGCCR	2 cut(s)	16, 801
AcsI	RAATTY	3 cut(s)	518, 1121, 1220
AcuI	CTGAAG	4 cut(s)	767, 1040, 1098, 1442
AcyI	GRCGYC	4 cut(s)	315, 380, 507, 657
AfaI	GTAC	5 cut(s)	541, 1014, 1435, 1652, 1756
AfiI	CCNNNNNNNGG	8 cut(s)	14, 39, 299, 570, 863, 1022, 1034, 1238
AgeI	ACCGGT	1 cut(s)	1527
AgsI	TTSAA	5 cut(s)	913, 1143, 1285, 1444, 1601
AhdI	GACNNNNNGTC	1 cut(s)	1471
AjnI	CCWGG	5 cut(s)	459, 477, 698, 1043, 1316
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
AluBI	AGCT	9 cut(s)	250, 687, 708, 1082, 1181, 1247, 1420, 1564, 1742
AluI	AGCT	9 cut(s)	250, 687, 708, 1082, 1181, 1247, 1420, 1564, 1742
Alw21I	GWGCWC	2 cut(s)	1183, 1385
Alw26I	GTCTC	2 cut(s)	541, 950
Alw44I	GTGCAC	1 cut(s)	1381
AlwI	GGATC	5 cut(s)	203, 469, 765, 1138, 1692
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	7 cut(s)	16, 109, 462, 675, 795, 801, 1262
ApaLI	GTGCAC	1 cut(s)	1381
ApeKI	GCWGC	3 cut(s)	140, 250, 1244
ApoI	RAATTY	3 cut(s)	518, 1121, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AscI	GGCGCGCC	1 cut(s)	43
AsiGI	ACCGGT	1 cut(s)	1527
Asp718I	GGTACC	1 cut(s)	1012
AspS9I	GGNCC	4 cut(s)	109, 675, 1025, 1262
AsuC2I	CCSGG	1 cut(s)	973
AsuHPI	GGTGA	7 cut(s)	484, 553, 620, 895, 1032, 1114, 1467
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	1025
AxyI	CCTNAGG	2 cut(s)	105, 1374
BaeGI	GKGCMC	3 cut(s)	995, 1385, 1674
BanI	GGYRCC	2 cut(s)	1012, 1411
BanII	GRGCYC	2 cut(s)	1109, 1183
BbsI	GAAGAC	3 cut(s)	232, 613, 755
Bbv12I	GWGCWC	2 cut(s)	1183, 1385
BbvCI	CCTCAGC	1 cut(s)	1738
BbvI	GCAGC	3 cut(s)	127, 237, 1256
BccI	CCATC	6 cut(s)	446, 811, 997, 1504, 1514, 1686
BceAI	ACGGC	6 cut(s)	3, 520, 566, 782, 820, 942
BciT130I	CCWGG	5 cut(s)	461, 479, 700, 1045, 1318
BclI	TGATCA	1 cut(s)	1203
BcnI	CCSGG	1 cut(s)	973
BcoDI	GTCTC	2 cut(s)	541, 950
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	2 cut(s)	485, 684
BglI	GCCNNNNNGGC	1 cut(s)	809
BisI	GCNGC	5 cut(s)	141, 251, 293, 822, 1245
BlsI	GCNGC	5 cut(s)	142, 252, 294, 823, 1246
Bme1390I	CCNGG	6 cut(s)	461, 479, 700, 973, 1045, 1318
Bme18I	GGWCC	1 cut(s)	1025
BmeRI	GACNNNNNGTC	1 cut(s)	1471
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	4 cut(s)	109, 675, 1025, 1262
BmiI	GGNNCC	4 cut(s)	1014, 1263, 1315, 1413
BmrFI	CCNGG	6 cut(s)	461, 479, 700, 973, 1045, 1318
BmsI	GCATC	5 cut(s)	294, 379, 585, 1283, 1508
BpiI	GAAGAC	3 cut(s)	232, 613, 755
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	592
Bpu10I	CCTNAGC	1 cut(s)	1738
BpuMI	CCSGG	1 cut(s)	973
BsaBI	GATNNNNATC	1 cut(s)	650
BsaHI	GRCGYC	4 cut(s)	315, 380, 507, 657
BsaJI	CCNNGG	7 cut(s)	502, 789, 798, 1028, 1043, 1109, 1629
BsaWI	WCCGGW	2 cut(s)	1015, 1527
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 39, 299, 570, 863, 1022, 1034, 1238
Bse118I	RCCGGY	2 cut(s)	605, 1527
Bse1I	ACTGG	2 cut(s)	571, 1591
Bse21I	CCTNAGG	2 cut(s)	105, 1374
Bse3DI	GCAATG	1 cut(s)	1263
Bse8I	GATNNNNATC	1 cut(s)	650
BseBI	CCWGG	5 cut(s)	461, 479, 700, 1045, 1318
BseDI	CCNNGG	7 cut(s)	502, 789, 798, 1028, 1043, 1109, 1629
BseGI	GGATG	7 cut(s)	352, 394, 939, 981, 1274, 1499, 1515
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	8 cut(s)	14, 39, 299, 570, 863, 1022, 1034, 1238
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	5 cut(s)	119, 882, 1388, 1428, 1752
BseNI	ACTGG	2 cut(s)	571, 1591
BsePI	GCGCGC	1 cut(s)	43
BseRI	GAGGAG	5 cut(s)	124, 143, 155, 158, 1173
BseSI	GKGCMC	3 cut(s)	995, 1385, 1674
BseXI	GCAGC	3 cut(s)	127, 237, 1256
BseYI	CCCAGC	2 cut(s)	281, 929
BsgI	GTGCAG	1 cut(s)	1070
Bsh1236I	CGCG	5 cut(s)	45, 368, 431, 666, 791
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	7 cut(s)	18, 111, 464, 677, 797, 803, 1264
BshNI	GGYRCC	2 cut(s)	1012, 1411
BshTI	ACCGGT	1 cut(s)	1527
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	1183, 1385
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	7 cut(s)	54, 193, 523, 606, 973, 1016, 1528
BslFI	GGGAC	5 cut(s)	245, 344, 887, 955, 1082
BslI	CCNNNNNNNGG	8 cut(s)	14, 39, 299, 570, 863, 1022, 1034, 1238
BsmAI	GTCTC	2 cut(s)	541, 950
BsmBI	CGTCTC	2 cut(s)	541, 950
BsmFI	GGGAC	5 cut(s)	245, 344, 887, 955, 1082
BsnI	GGCC	7 cut(s)	18, 111, 464, 677, 797, 803, 1264
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	5 cut(s)	995, 1109, 1183, 1385, 1674
Bsp143I	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
Bsp68I	TCGCGA	1 cut(s)	368
BspANI	GGCC	7 cut(s)	18, 111, 464, 677, 797, 803, 1264
BspCNI	CTCAG	5 cut(s)	118, 883, 1387, 1429, 1751
BspFNI	CGCG	5 cut(s)	45, 368, 431, 666, 791
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	4 cut(s)	1014, 1263, 1315, 1413
BspPI	GGATC	5 cut(s)	203, 469, 765, 1138, 1692
BspQI	GCTCTTC	1 cut(s)	491
BspT107I	GGYRCC	2 cut(s)	1012, 1411
BsrDI	GCAATG	1 cut(s)	1263
BsrFI	RCCGGY	2 cut(s)	605, 1527
BsrI	ACTGG	2 cut(s)	571, 1591
BssAI	RCCGGY	2 cut(s)	605, 1527
BssECI	CCNNGG	7 cut(s)	502, 789, 798, 1028, 1043, 1109, 1629
BssHII	GCGCGC	1 cut(s)	43
BssMI	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
BssNI	GRCGYC	4 cut(s)	315, 380, 507, 657
BssT1I	CCWWGG	1 cut(s)	1028
Bst2UI	CCWGG	5 cut(s)	461, 479, 700, 1045, 1318
Bst4CI	ACNGT	5 cut(s)	323, 767, 1370, 1461, 1637
Bst6I	CTCTTC	2 cut(s)	491, 1418
BstACI	GRCGYC	4 cut(s)	315, 380, 507, 657
BstC8I	GCNNGC	8 cut(s)	45, 49, 679, 685, 1052, 1303, 1307, 1381
BstDEI	CTNAG	6 cut(s)	105, 891, 1095, 1374, 1437, 1738
BstDSI	CCRYGG	4 cut(s)	502, 789, 798, 1109
BstENI	CCTNNNNNAGG	2 cut(s)	1032, 1236
BstF5I	GGATG	7 cut(s)	352, 394, 939, 981, 1274, 1499, 1515
BstFNI	CGCG	5 cut(s)	45, 368, 431, 666, 791
BstH2I	RGCGCY	2 cut(s)	485, 684
BstKTI	GATC	7 cut(s)	27, 198, 477, 760, 1133, 1206, 1687
BstMAI	GTCTC	2 cut(s)	541, 950
BstMBI	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	6 cut(s)	663, 674, 693, 809, 818, 1253
BstNI	CCWGG	5 cut(s)	461, 479, 700, 1045, 1318
BstNSI	RCATGY	2 cut(s)	1054, 1309
BstSCI	CCNGG	6 cut(s)	459, 477, 698, 971, 1043, 1316
BstSLI	GKGCMC	3 cut(s)	995, 1385, 1674
BstUI	CGCG	5 cut(s)	45, 368, 431, 666, 791
BstV1I	GCAGC	3 cut(s)	127, 237, 1256
BstV2I	GAAGAC	3 cut(s)	232, 613, 755
BstX2I	RGATCY	2 cut(s)	195, 1684
BstYI	RGATCY	2 cut(s)	195, 1684
Bsu36I	CCTNAGG	2 cut(s)	105, 1374
BsuRI	GGCC	7 cut(s)	18, 111, 464, 677, 797, 803, 1264
BtgI	CCRYGG	4 cut(s)	502, 789, 798, 1109
BtsCI	GGATG	7 cut(s)	352, 394, 939, 981, 1274, 1499, 1515
BtsIMutI	CAGTG	2 cut(s)	564, 1642
BtuMI	TCGCGA	1 cut(s)	368
Cac8I	GCNNGC	8 cut(s)	45, 49, 679, 685, 1052, 1303, 1307, 1381
CciI	TCATGA	1 cut(s)	624
Cfr10I	RCCGGY	2 cut(s)	605, 1527
Cfr13I	GGNCC	4 cut(s)	109, 675, 1025, 1262
Cfr42I	CCGCGG	1 cut(s)	792
CseI	GACGC	4 cut(s)	323, 388, 496, 646
Csp6I	GTAC	5 cut(s)	540, 1013, 1434, 1651, 1755
CspAI	ACCGGT	1 cut(s)	1527
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	6 cut(s)	14, 625, 1051, 1065, 1193, 1306
CviQI	GTAC	5 cut(s)	540, 1013, 1434, 1651, 1755
DdeI	CTNAG	6 cut(s)	105, 891, 1095, 1374, 1437, 1738
DpnI	GATC	7 cut(s)	26, 197, 476, 759, 1132, 1205, 1686
DpnII	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
DrdI	GACNNNNNNGTC	2 cut(s)	35, 617
DriI	GACNNNNNGTC	1 cut(s)	1471
DseDI	GACNNNNNNGTC	2 cut(s)	35, 617
EaeI	YGGCCR	2 cut(s)	16, 801
Eam1104I	CTCTTC	2 cut(s)	491, 1418
Eam1105I	GACNNNNNGTC	1 cut(s)	1471
EarI	CTCTTC	2 cut(s)	491, 1418
EciI	GGCGGA	3 cut(s)	738, 827, 839
Ecl136II	GAGCTC	1 cut(s)	1181
Eco130I	CCWWGG	1 cut(s)	1028
Eco24I	GRGCYC	2 cut(s)	1109, 1183
Eco47I	GGWCC	1 cut(s)	1025
Eco53kI	GAGCTC	1 cut(s)	1181
Eco57I	CTGAAG	4 cut(s)	767, 1040, 1098, 1442
Eco81I	CCTNAGG	2 cut(s)	105, 1374
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	1181
EcoNI	CCTNNNNNAGG	2 cut(s)	1032, 1236
EcoRI	GAATTC	2 cut(s)	518, 1220
EcoRII	CCWGG	5 cut(s)	459, 477, 698, 1043, 1316
EcoT14I	CCWWGG	1 cut(s)	1028
EcoT38I	GRGCYC	2 cut(s)	1109, 1183
ErhI	CCWWGG	1 cut(s)	1028
Esp3I	CGTCTC	2 cut(s)	541, 950
FaeI	CATG	6 cut(s)	17, 628, 1054, 1068, 1196, 1309
FaqI	GGGAC	5 cut(s)	245, 344, 887, 955, 1082
FatI	CATG	6 cut(s)	13, 624, 1050, 1064, 1192, 1305
FauI	CCCGC	3 cut(s)	477, 856, 1294
FbaI	TGATCA	1 cut(s)	1203
Fnu4HI	GCNGC	5 cut(s)	141, 251, 293, 822, 1245
FokI	GGATG	7 cut(s)	359, 401, 946, 988, 1261, 1486, 1522
FriOI	GRGCYC	2 cut(s)	1109, 1183
Fsp4HI	GCNGC	5 cut(s)	141, 251, 293, 822, 1245
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	5 cut(s)	141, 251, 293, 822, 1245
GsaI	CCCAGC	2 cut(s)	285, 933
GsuI	CTGGAG	1 cut(s)	592
HaeII	RGCGCY	2 cut(s)	485, 684
HaeIII	GGCC	7 cut(s)	18, 111, 464, 677, 797, 803, 1264
HapII	CCGG	7 cut(s)	54, 193, 523, 606, 973, 1016, 1528
HgaI	GACGC	4 cut(s)	323, 388, 496, 646
Hin1I	GRCGYC	4 cut(s)	315, 380, 507, 657
Hin1II	CATG	6 cut(s)	17, 628, 1054, 1068, 1196, 1309
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	7 cut(s)	354, 408, 611, 965, 1173, 1189, 1748
HpaII	CCGG	7 cut(s)	54, 193, 523, 606, 973, 1016, 1528
HphI	GGTGA	7 cut(s)	484, 553, 620, 895, 1032, 1114, 1467
Hpy166II	GTNNAC	4 cut(s)	94, 586, 1383, 1457
Hpy188III	TCNNGA	6 cut(s)	367, 625, 761, 771, 1682, 1706
Hpy8I	GTNNAC	4 cut(s)	94, 586, 1383, 1457
Hpy99I	CGWCG	8 cut(s)	236, 317, 323, 512, 605, 620, 666, 733
HpyAV	CCTTC	8 cut(s)	393, 768, 772, 898, 907, 1149, 1595, 1658
HpyCH4III	ACNGT	5 cut(s)	323, 767, 1370, 1461, 1637
HpyCH4IV	ACGT	1 cut(s)	1154
HpyCH4V	TGCA	7 cut(s)	1087, 1211, 1274, 1309, 1383, 1534, 1626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	663, 674, 693, 809, 818, 1253
HpyF3I	CTNAG	6 cut(s)	105, 891, 1095, 1374, 1437, 1738
HpySE526I	ACGT	1 cut(s)	1154
Hsp92I	GRCGYC	4 cut(s)	315, 380, 507, 657
Hsp92II	CATG	6 cut(s)	17, 628, 1054, 1068, 1196, 1309
KpnI	GGTACC	1 cut(s)	1016
Ksp22I	TGATCA	1 cut(s)	1203
KspI	CCGCGG	1 cut(s)	792
Kzo9I	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	6 cut(s)	573, 705, 725, 1186, 1241, 1313
Lsp1109I	GCAGC	3 cut(s)	127, 237, 1256
LweI	GCATC	5 cut(s)	294, 379, 585, 1283, 1508
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	1154
MaeIII	GTNAC	3 cut(s)	608, 1060, 1473
MalI	GATC	7 cut(s)	26, 197, 476, 759, 1132, 1205, 1686
MboI	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
MboII	GAAGA	8 cut(s)	232, 382, 478, 613, 760, 1216, 1229, 1435
MflI	RGATCY	2 cut(s)	195, 1684
MhlI	GDGCHC	5 cut(s)	995, 1109, 1183, 1385, 1674
MlyI	GAGTC	4 cut(s)	363, 605, 959, 1183
MmeI	TCCRAC	2 cut(s)	225, 1108
MseI	TTAA	4 cut(s)	453, 1358, 1689, 1722
MspA1I	CMGCKG	4 cut(s)	140, 791, 1564, 1742
MspI	CCGG	7 cut(s)	54, 193, 523, 606, 973, 1016, 1528
MspR9I	CCNGG	6 cut(s)	461, 479, 700, 973, 1045, 1318
MvaI	CCWGG	5 cut(s)	461, 479, 700, 1045, 1318
MvnI	CGCG	5 cut(s)	45, 368, 431, 666, 791
MwoI	GCNNNNNNNGC	6 cut(s)	663, 674, 693, 809, 818, 1253
NciI	CCSGG	1 cut(s)	973
NdeII	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
NlaIII	CATG	6 cut(s)	17, 628, 1054, 1068, 1196, 1309
NlaIV	GGNNCC	4 cut(s)	1014, 1263, 1315, 1413
NmuCI	GTSAC	2 cut(s)	608, 1473
NruI	TCGCGA	1 cut(s)	368
NspI	RCATGY	2 cut(s)	1054, 1309
PaeI	GCATGC	2 cut(s)	1054, 1309
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	624
PalAI	GGCGCGCC	1 cut(s)	43
PauI	GCGCGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	408, 1173, 1748
PflFI	GACNNNGTC	3 cut(s)	236, 353, 614
PflMI	CCANNNNNTGG	2 cut(s)	39, 570
PfoI	TCCNGGA	1 cut(s)	971
PinAI	ACCGGT	1 cut(s)	1527
PkrI	GCNGC	5 cut(s)	142, 252, 294, 823, 1246
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	4 cut(s)	362, 605, 959, 1183
PpsI	GAGTC	4 cut(s)	362, 605, 959, 1183
Psp124BI	GAGCTC	1 cut(s)	1183
Psp1406I	AACGTT	1 cut(s)	1154
Psp6I	CCWGG	5 cut(s)	459, 477, 698, 1043, 1316
PspFI	CCCAGC	2 cut(s)	281, 929
PspGI	CCWGG	5 cut(s)	459, 477, 698, 1043, 1316
PspN4I	GGNNCC	4 cut(s)	1014, 1263, 1315, 1413
PspPI	GGNCC	4 cut(s)	109, 675, 1025, 1262
PspXI	VCTCGAGB	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	195, 1684
PsyI	GACNNNGTC	3 cut(s)	236, 353, 614
PteI	GCGCGC	1 cut(s)	43
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	1564, 1742
RruI	TCGCGA	1 cut(s)	368
RsaI	GTAC	5 cut(s)	541, 1014, 1435, 1652, 1756
RsaNI	GTAC	5 cut(s)	540, 1013, 1434, 1651, 1755
SacI	GAGCTC	1 cut(s)	1183
SacII	CCGCGG	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	453, 1358, 1689, 1722
SatI	GCNGC	5 cut(s)	141, 251, 293, 822, 1245
Sau3AI	GATC	7 cut(s)	24, 195, 474, 757, 1130, 1203, 1684
Sau96I	GGNCC	4 cut(s)	109, 675, 1025, 1262
SchI	GAGTC	4 cut(s)	363, 605, 959, 1183
ScrFI	CCNGG	6 cut(s)	461, 479, 700, 973, 1045, 1318
SduI	GDGCHC	5 cut(s)	995, 1109, 1183, 1385, 1674
SfaNI	GCATC	5 cut(s)	294, 379, 585, 1283, 1508
Sfr274I	CTCGAG	1 cut(s)	116
Sfr303I	CCGCGG	1 cut(s)	792
SgrAI	CRCCGGYG	1 cut(s)	605
SgrBI	CCGCGG	1 cut(s)	792
SgsI	GGCGCGCC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	1025
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	2 cut(s)	1054, 1309
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	1183
StyD4I	CCNGG	6 cut(s)	459, 477, 698, 971, 1043, 1316
StyI	CCWWGG	1 cut(s)	1028
TaaI	ACNGT	5 cut(s)	323, 767, 1370, 1461, 1637
TaiI	ACGT	1 cut(s)	1157
TaqI	TCGA	8 cut(s)	23, 27, 117, 288, 312, 737, 1001, 1119
TatI	WGTACW	3 cut(s)	1433, 1650, 1754
TauI	GCSGC	2 cut(s)	295, 824
TfiI	GAWTC	3 cut(s)	408, 1173, 1748
Tru1I	TTAA	4 cut(s)	453, 1358, 1689, 1722
Tru9I	TTAA	4 cut(s)	453, 1358, 1689, 1722
TscAI	CASTG	2 cut(s)	571, 1642
TseFI	GTSAC	2 cut(s)	608, 1473
TseI	GCWGC	3 cut(s)	140, 250, 1244
Tsp45I	GTSAC	2 cut(s)	608, 1473
TspDTI	ATGAA	4 cut(s)	613, 640, 1136, 1571
TspGWI	ACGGA	4 cut(s)	52, 604, 650, 974
TspRI	CASTG	2 cut(s)	571, 1642
Tth111I	GACNNNGTC	3 cut(s)	236, 353, 614
Van91I	CCANNNNNTGG	2 cut(s)	39, 570
VneI	GTGCAC	1 cut(s)	1381
VpaK11BI	GGWCC	1 cut(s)	1025
XagI	CCTNNNNNAGG	2 cut(s)	1032, 1236
XapI	RAATTY	3 cut(s)	518, 1121, 1220
XceI	RCATGY	2 cut(s)	1054, 1309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	864
XhoI	CTCGAG	1 cut(s)	116
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.