Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

33519189 .. 33521261

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTCGTCGCCGGCGACTCTGTGGTGTTCATGAGGAGCTCCAGAGGTGGGGAGATGTACATCGGGGTGAGGCGGAGCTCGCACATTGGGCTGACGTCGGAGGAGGAAGGTTCTGGAGGTGACGGGTTTAAGACAAGGCTTTTGGTGTGGTGTATTATCCGAAAGCTGGGTGGGCTTTGTGGTGAAGGCAGAGGTGGTGGTGAAGGCATTCAAGTTAACTTTGTTGCATCAACACCTTCTCTTCATACTGCATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATGACCGGAGCAGCTAATTCACCAATGGAGAAATTCAATGCTTCTTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCGTTTATTAAATGAAAATTCTCCTCGGATGTGCACCTGCAATTCCTTTGGCAACAACATGGTGCCAAGGTTGAAGAGGGTGTCTACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGAATTAAAGCGAGTAGTCCACATTCCTTTGGCACTGGAACTTGATGGGAACCGAAACTGCAACTCGACAATGGTCAGAAGAAGTTCTTTTCAACTCTTTGGTCTGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGCGCTGGGATCGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCCTGAAAGGTTTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

283

Amino Acids

30.62

Weight (kDa)

7.55

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	494
AatII	GACGTC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	734, 786
AcsI	RAATTY	3 cut(s)	317, 362, 466
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	59, 746, 841
AfiI	CCNNNNNNNGG	3 cut(s)	48, 166, 335
AgsI	TTSAA	9 cut(s)	212, 367, 382, 523, 544, 671, 692, 698, 833
AjnI	CCWGG	2 cut(s)	289, 416
AluBI	AGCT	7 cut(s)	39, 78, 166, 278, 344, 827, 836
AluI	AGCT	7 cut(s)	39, 78, 166, 278, 344, 827, 836
Alw21I	GWGCWC	4 cut(s)	41, 80, 280, 485
Alw26I	GTCTC	2 cut(s)	262, 826
Alw44I	GTGCAC	1 cut(s)	481
AlwI	GGATC	2 cut(s)	734, 786
ApaLI	GTGCAC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	295, 341
ApoI	RAATTY	3 cut(s)	317, 362, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
Asp700I	GAANNNNTTC	2 cut(s)	207, 661
AspLEI	GCGC	1 cut(s)	722
AsuHPI	GGTGA	6 cut(s)	79, 131, 194, 212, 342, 567
BaeGI	GKGCMC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	3 cut(s)	41, 80, 280
Bbv12I	GWGCWC	4 cut(s)	41, 80, 280, 485
BbvI	GCAGC	2 cut(s)	282, 353
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	291, 418
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	262, 826
BfuAI	ACCTGC	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	2 cut(s)	296, 342
BlsI	GCNGC	2 cut(s)	297, 343
Bme1390I	CCNGG	2 cut(s)	291, 418
BmiI	GGNNCC	3 cut(s)	415, 513, 629
BmrFI	CCNGG	2 cut(s)	291, 418
BmsI	GCATC	2 cut(s)	236, 697
BoxI	GACNNNNGTC	1 cut(s)	650
BpmI	CTGGAG	2 cut(s)	25, 135
BsaBI	GATNNNNATC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	290, 473, 515
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 166, 335
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	618, 780
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	291, 418
BseDI	CCNNGG	3 cut(s)	290, 473, 515
BseGI	GGATG	1 cut(s)	483
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	3 cut(s)	48, 166, 335
BseMII	CTCAG	4 cut(s)	286, 290, 528, 837
BseNI	ACTGG	2 cut(s)	618, 780
BseRI	GAGGAG	3 cut(s)	49, 116, 462
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	282, 353
BseYI	CCCAGC	2 cut(s)	166, 722
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	4 cut(s)	41, 80, 280, 485
BsiSI	CCGG	2 cut(s)	12, 336
BslI	CCNNNNNNNGG	3 cut(s)	48, 166, 335
BsmAI	GTCTC	2 cut(s)	262, 826
BsmI	GAATGC	1 cut(s)	207
Bsp1286I	GDGCHC	4 cut(s)	41, 80, 280, 485
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	424, 565, 726, 778
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	4 cut(s)	285, 291, 529, 836
BspHI	TCATGA	2 cut(s)	30, 321
BspLI	GGNNCC	3 cut(s)	415, 513, 629
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	734, 786
BspT107I	GGYRCC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	618, 780
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	290, 473, 515
BssMI	GATC	4 cut(s)	424, 565, 726, 778
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	291, 418
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	246, 518
BstACI	GRCGYC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	13, 80, 403, 407
BstDEI	CTNAG	4 cut(s)	272, 299, 537, 823
BstF5I	GGATG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	4 cut(s)	427, 568, 729, 781
BstMAI	GTCTC	2 cut(s)	262, 826
BstMBI	GATC	4 cut(s)	424, 565, 726, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 88, 172, 833
BstNI	CCWGG	2 cut(s)	291, 418
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	289, 416
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	282, 353
BstX2I	RGATCY	2 cut(s)	424, 778
BstYI	RGATCY	2 cut(s)	424, 778
BsuI	GTATCC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	281, 611
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	4 cut(s)	13, 80, 403, 407
CciI	TCATGA	2 cut(s)	30, 321
CfoI	GCGC	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	58, 745, 840
CviAII	CATG	4 cut(s)	31, 322, 406, 508
CviQI	GTAC	3 cut(s)	58, 745, 840
DdeI	CTNAG	4 cut(s)	272, 299, 537, 823
DpnI	GATC	4 cut(s)	426, 567, 728, 780
DpnII	GATC	4 cut(s)	424, 565, 726, 778
Eam1104I	CTCTTC	2 cut(s)	246, 518
EarI	CTCTTC	2 cut(s)	246, 518
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	3 cut(s)	39, 78, 278
Eco130I	CCWWGG	1 cut(s)	515
Eco24I	GRGCYC	3 cut(s)	41, 80, 280
Eco53kI	GAGCTC	3 cut(s)	39, 78, 278
EcoICRI	GAGCTC	3 cut(s)	39, 78, 278
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	289, 416
EcoT14I	CCWWGG	1 cut(s)	515
EcoT38I	GRGCYC	3 cut(s)	41, 80, 280
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	4 cut(s)	34, 325, 409, 511
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FatI	CATG	4 cut(s)	30, 321, 405, 507
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	296, 342
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	3 cut(s)	41, 80, 280
Fsp4HI	GCNGC	2 cut(s)	296, 342
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	2 cut(s)	296, 342
GsaI	CCCAGC	2 cut(s)	170, 726
GsuI	CTGGAG	2 cut(s)	25, 135
HapII	CCGG	2 cut(s)	12, 336
HhaI	GCGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	34, 325, 409, 511
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	4 cut(s)	17, 270, 286, 819
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	12, 336
HphI	GGTGA	6 cut(s)	79, 131, 194, 212, 342, 567
Hpy166II	GTNNAC	5 cut(s)	217, 483, 534, 557, 598
Hpy188I	TCNGA	8 cut(s)	100, 161, 275, 477, 565, 656, 684, 765
Hpy188III	TCNNGA	4 cut(s)	31, 42, 114, 322
Hpy8I	GTNNAC	5 cut(s)	217, 483, 534, 557, 598
Hpy99I	CGWCG	2 cut(s)	11, 100
HpyAV	CCTTC	5 cut(s)	101, 179, 197, 246, 692
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	6 cut(s)	227, 251, 409, 483, 489, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 88, 172, 833
HpyF3I	CTNAG	4 cut(s)	272, 299, 537, 823
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	34, 325, 409, 511
HspAI	GCGC	1 cut(s)	720
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	424, 565, 726, 778
LmnI	GCTCC	6 cut(s)	36, 44, 75, 283, 338, 413
Lsp1109I	GCAGC	2 cut(s)	282, 353
LweI	GCATC	2 cut(s)	236, 697
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	4 cut(s)	426, 567, 728, 780
MboI	GATC	4 cut(s)	424, 565, 726, 778
MboII	GAAGA	4 cut(s)	233, 326, 535, 669
MflI	RGATCY	2 cut(s)	424, 778
MhlI	GDGCHC	4 cut(s)	41, 80, 280, 485
MluCI	AATT	7 cut(s)	317, 346, 362, 466, 490, 569, 581
MlyI	GAGTC	3 cut(s)	11, 264, 828
MmeI	TCCRAC	1 cut(s)	78
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	2 cut(s)	207, 661
MseI	TTAA	4 cut(s)	129, 216, 458, 584
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	2 cut(s)	12, 336
MspR9I	CCNGG	2 cut(s)	291, 418
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	291, 418
MwoI	GCNNNNNNNGC	4 cut(s)	79, 88, 172, 833
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	4 cut(s)	424, 565, 726, 778
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	34, 325, 409, 511
NlaIV	GGNNCC	3 cut(s)	415, 513, 629
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	409
PagI	TCATGA	2 cut(s)	30, 321
PaqCI	CACCTGC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	2 cut(s)	207, 661
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	297, 343
PleI	GAGTC	3 cut(s)	11, 264, 827
PpsI	GAGTC	3 cut(s)	11, 264, 827
PshAI	GACNNNNGTC	1 cut(s)	650
Psp124BI	GAGCTC	3 cut(s)	41, 80, 280
Psp6I	CCWGG	2 cut(s)	289, 416
PspFI	CCCAGC	2 cut(s)	166, 722
PspGI	CCWGG	2 cut(s)	289, 416
PspN4I	GGNNCC	3 cut(s)	415, 513, 629
PsuI	RGATCY	2 cut(s)	424, 778
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	3 cut(s)	59, 746, 841
RsaNI	GTAC	3 cut(s)	58, 745, 840
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	3 cut(s)	41, 80, 280
SaqAI	TTAA	4 cut(s)	129, 216, 458, 584
SatI	GCNGC	2 cut(s)	296, 342
Sau3AI	GATC	4 cut(s)	424, 565, 726, 778
SchI	GAGTC	3 cut(s)	11, 264, 828
ScrFI	CCNGG	2 cut(s)	291, 418
SduI	GDGCHC	4 cut(s)	41, 80, 280, 485
SfaNI	GCATC	2 cut(s)	236, 697
SgrAI	CRCCGGYG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	317, 346, 362, 466, 490, 569, 581
SsiI	CCGC	1 cut(s)	73
SstI	GAGCTC	3 cut(s)	41, 80, 280
StyD4I	CCNGG	2 cut(s)	289, 416
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	644, 817
TasI	AATT	7 cut(s)	317, 346, 362, 466, 490, 569, 581
TatI	WGTACW	2 cut(s)	57, 839
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	4 cut(s)	129, 216, 458, 584
Tru9I	TTAA	4 cut(s)	129, 216, 458, 584
TscAI	CASTG	2 cut(s)	288, 618
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	295, 341
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	5 cut(s)	19, 233, 310, 477, 765
TspRI	CASTG	2 cut(s)	288, 618
VneI	GTGCAC	1 cut(s)	481
XapI	RAATTY	3 cut(s)	317, 362, 466
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	207, 661
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.