Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

3075402 .. 3077431

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATAGCAAAAACTGTTACTGGAGTCATTTTAGCACAACGCAGAGGTGGTGGAGAAAGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCATGGAGACTGATGACTCGTCCAGGATGACTTGGATTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGGTCTTATCCCCATGGCGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATATAGTACCTTCGCTTCATATTGTATATCCCCCCACAAAGAGACTCAGAACTCCACTGAATCCCGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATACCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATTCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTCTAGCAACAACAACATGGTGTCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGGTAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACGGCAACTCGACATTTGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTCGAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATGCCAAACTGCTTGAAAGGATTGATGTTCGAGTCTTAACTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

301

Amino Acids

32.77

Weight (kDa)

4.7

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	35 - 87	4.3e-06	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	590
AclWI	GGATC	1 cut(s)	840
AcsI	RAATTY	2 cut(s)	371, 520
AcuI	CTGAAG	2 cut(s)	138, 231
AfaI	GTAC	3 cut(s)	288, 800, 895
AfiI	CCNNNNNNNGG	2 cut(s)	173, 389
AjnI	CCWGG	2 cut(s)	122, 470
AluBI	AGCT	2 cut(s)	398, 890
AluI	AGCT	2 cut(s)	398, 890
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	2 cut(s)	101, 316
Alw44I	GTGCAC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	840
ApaLI	GTGCAC	1 cut(s)	535
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	371, 520
Asp700I	GAANNNNTTC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	247, 624
BaeGI	GKGCMC	2 cut(s)	146, 539
BanII	GRGCYC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	92, 671
BceAI	ACGGC	2 cut(s)	94, 706
BciT130I	CCWGG	2 cut(s)	124, 472
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	101, 316
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	3 cut(s)	124, 345, 472
BmiI	GGNNCC	2 cut(s)	469, 683
BmrFI	CCNGG	3 cut(s)	124, 345, 472
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	2 cut(s)	272, 751
BmuI	ACTGGG	1 cut(s)	786
BoxI	GACNNNNGTC	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	42, 411
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	187, 242, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 389
Bse1I	ACTGG	4 cut(s)	25, 394, 781, 834
BseBI	CCWGG	2 cut(s)	124, 472
BseDI	CCNNGG	3 cut(s)	187, 242, 527
BseGI	GGATG	4 cut(s)	91, 132, 208, 537
BseLI	CCNNNNNNNGG	2 cut(s)	173, 389
BseMII	CTCAG	4 cut(s)	159, 340, 344, 585
BseNI	ACTGG	4 cut(s)	25, 394, 781, 834
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	2 cut(s)	146, 539
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	173, 389
BsmAI	GTCTC	2 cut(s)	101, 316
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	146, 242, 539
Bsp143I	GATC	3 cut(s)	478, 622, 832
Bsp19I	CCATGG	2 cut(s)	187, 242
BspCNI	CTCAG	4 cut(s)	160, 339, 345, 586
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	469, 683
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	25, 394, 781, 834
BssECI	CCNNGG	3 cut(s)	187, 242, 527
BssMI	GATC	3 cut(s)	478, 622, 832
BssT1I	CCWWGG	2 cut(s)	187, 242
Bst2UI	CCWGG	2 cut(s)	124, 472
Bst4CI	ACNGT	4 cut(s)	16, 618, 785, 883
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	457, 461
BstDEI	CTNAG	5 cut(s)	168, 228, 326, 353, 594
BstDSI	CCRYGG	2 cut(s)	187, 242
BstF5I	GGATG	4 cut(s)	91, 132, 208, 537
BstKTI	GATC	3 cut(s)	481, 625, 835
BstMAI	GTCTC	2 cut(s)	101, 316
BstMBI	GATC	3 cut(s)	478, 622, 832
BstNI	CCWGG	2 cut(s)	124, 472
BstNSI	RCATGY	1 cut(s)	463
BstPAI	GACNNNNGTC	1 cut(s)	704
BstSCI	CCNGG	3 cut(s)	122, 343, 470
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	2 cut(s)	146, 539
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	478, 832
BstYI	RGATCY	2 cut(s)	478, 832
BsuI	GTATCC	1 cut(s)	502
BtgI	CCRYGG	2 cut(s)	187, 242
BtsCI	GGATG	4 cut(s)	91, 132, 208, 537
BtsIMutI	CAGTG	2 cut(s)	335, 774
Cac8I	GCNNGC	2 cut(s)	457, 461
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	287, 799, 894
CviAII	CATG	8 cut(s)	103, 188, 198, 243, 376, 460, 565, 667
CviJI	RGCY	7 cut(s)	81, 158, 240, 398, 470, 642, 890
CviKI_1	RGCY	7 cut(s)	81, 158, 240, 398, 470, 642, 890
CviQI	GTAC	3 cut(s)	287, 799, 894
DdeI	CTNAG	5 cut(s)	168, 228, 326, 353, 594
DpnI	GATC	3 cut(s)	480, 624, 834
DpnII	GATC	3 cut(s)	478, 622, 832
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	187, 242
Eco24I	GRGCYC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	138, 231
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	122, 470
EcoT14I	CCWWGG	2 cut(s)	187, 242
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	187, 242
FaeI	CATG	8 cut(s)	106, 191, 201, 246, 379, 463, 568, 670
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	8 cut(s)	102, 187, 197, 242, 375, 459, 564, 666
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	4 cut(s)	98, 139, 215, 544
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	2 cut(s)	42, 411
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	8 cut(s)	106, 191, 201, 246, 379, 463, 568, 670
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	7 cut(s)	24, 91, 116, 136, 324, 340, 873
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	247, 624
Hpy166II	GTNNAC	5 cut(s)	253, 537, 591, 614, 653
Hpy188I	TCNGA	6 cut(s)	329, 531, 622, 710, 738, 819
Hpy188III	TCNNGA	4 cut(s)	95, 167, 376, 573
Hpy8I	GTNNAC	5 cut(s)	253, 537, 591, 614, 653
HpyAV	CCTTC	5 cut(s)	59, 282, 300, 356, 746
HpyCH4III	ACNGT	4 cut(s)	16, 618, 785, 883
HpyCH4V	TGCA	5 cut(s)	220, 263, 463, 537, 774
HpyF3I	CTNAG	5 cut(s)	168, 228, 326, 353, 594
Hsp92II	CATG	8 cut(s)	106, 191, 201, 246, 379, 463, 568, 670
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	478, 622, 832
LmnI	GCTCC	2 cut(s)	392, 467
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	272, 751
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	16, 193
MalI	GATC	3 cut(s)	480, 624, 834
MboI	GATC	3 cut(s)	478, 622, 832
MboII	GAAGA	5 cut(s)	144, 269, 380, 417, 723
MflI	RGATCY	2 cut(s)	478, 832
MhlI	GDGCHC	3 cut(s)	146, 242, 539
MluCI	AATT	8 cut(s)	357, 371, 400, 416, 421, 520, 544, 626
MlyI	GAGTC	5 cut(s)	33, 100, 110, 318, 882
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	5 cut(s)	38, 225, 537, 559, 576
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	2 cut(s)	512, 878
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	3 cut(s)	124, 345, 472
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	124, 472
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	2 cut(s)	187, 242
NdeII	GATC	3 cut(s)	478, 622, 832
NlaIII	CATG	8 cut(s)	106, 191, 201, 246, 379, 463, 568, 670
NlaIV	GGNNCC	2 cut(s)	469, 683
NspI	RCATGY	1 cut(s)	463
PaeI	GCATGC	1 cut(s)	463
PagI	TCATGA	1 cut(s)	375
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	136, 340
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	5 cut(s)	32, 99, 110, 318, 881
PpsI	GAGTC	5 cut(s)	32, 99, 110, 318, 881
PshAI	GACNNNNGTC	1 cut(s)	704
Psp6I	CCWGG	2 cut(s)	122, 470
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	122, 470
PspN4I	GGNNCC	2 cut(s)	469, 683
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	478, 832
RsaI	GTAC	3 cut(s)	288, 800, 895
RsaNI	GTAC	3 cut(s)	287, 799, 894
SaqAI	TTAA	2 cut(s)	512, 878
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	478, 622, 832
SchI	GAGTC	5 cut(s)	33, 100, 110, 318, 882
ScrFI	CCNGG	3 cut(s)	124, 345, 472
SduI	GDGCHC	3 cut(s)	146, 242, 539
SfaNI	GCATC	2 cut(s)	272, 751
SfcI	CTRYAG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	8 cut(s)	357, 371, 400, 416, 421, 520, 544, 626
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	122, 343, 470
StyI	CCWWGG	2 cut(s)	187, 242
TaaI	ACNGT	4 cut(s)	16, 618, 785, 883
TaqI	TCGA	3 cut(s)	698, 750, 871
TasI	AATT	8 cut(s)	357, 371, 400, 416, 421, 520, 544, 626
TatI	WGTACW	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	136, 340
Tru1I	TTAA	2 cut(s)	512, 878
Tru9I	TTAA	2 cut(s)	512, 878
TscAI	CASTG	2 cut(s)	342, 781
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	6 cut(s)	219, 269, 287, 364, 531, 819
TspRI	CASTG	2 cut(s)	342, 781
VneI	GTGCAC	1 cut(s)	535
XapI	RAATTY	2 cut(s)	371, 520
XceI	RCATGY	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.