Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002517.1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

21090 .. 21452

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002517.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtgcacctataattcctttggcaacaacaacgtggtgccaaggttgaagagggtgtcaactgagttgaacattggaagtccacagtctgatcaattatcaccagatagccagagtagtccacattcctttggcatggaacttgatgggaaccaaaactgcaacttgagaaaggttggaagaagttcttttcaactctttggtcagaccattcaacttggaggtattgatgctgttggttgcactggggacggtggcaatgtagggtacaatgaaactgaacttctgaacaaccaactggatctttcttataccaaactgcttgtaaggattgatgttcgagtctcagctgttgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

120

Amino Acids

12.97

Weight (kDa)

4.93

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	49, 70, 194, 215, 356
AluBI	AGCT	2 cut(s)	350, 359
AluI	AGCT	2 cut(s)	350, 359
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	309
ApaLI	GTGCAC	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	39, 152
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	250, 303
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	54, 360
BseNI	ACTGG	2 cut(s)	250, 303
BseSI	GKGCMC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	91, 301
BspCNI	CTCAG	2 cut(s)	55, 359
BspLI	GGNNCC	2 cut(s)	39, 152
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	250, 303
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	91, 301
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	87, 254
Bst6I	CTCTTC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	63, 346
BstKTI	GATC	2 cut(s)	94, 304
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	2 cut(s)	91, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	3 cut(s)	111, 350, 359
CviKI_1	RGCY	3 cut(s)	111, 350, 359
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	63, 346
DpnI	GATC	2 cut(s)	93, 303
DpnII	GATC	2 cut(s)	91, 301
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	12, 137, 312
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	91
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	1 cut(s)	342
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	4 cut(s)	6, 60, 83, 122
Hpy188I	TCNGA	3 cut(s)	91, 207, 288
Hpy8I	GTNNAC	4 cut(s)	6, 60, 83, 122
HpyCH4III	ACNGT	2 cut(s)	87, 254
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	6, 162, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	63, 346
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 301
LpnPI	CCDG	4 cut(s)	117, 125, 231, 284
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	33
MalI	GATC	2 cut(s)	93, 303
MboI	GATC	2 cut(s)	91, 301
MboII	GAAGA	2 cut(s)	61, 192
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	13, 95
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	45, 215
MroXI	GAANNNNTTC	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	91, 301
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	2 cut(s)	39, 152
PdmI	GAANNNNTTC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	39, 152
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	91, 301
SchI	GAGTC	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	11, 36, 47, 177, 226, 352, 361
SfaNI	GCATC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	13, 95
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	87, 254
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	13, 95
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.