Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172656.1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 558

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172656.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 557 bp

atgcctcccaattctcaccgtcacactcgctctcgttctcattctcactctcacgcgcctccgccgccgcagctcgtctccatcgaccccaaaatctggcgagcctgcgccggcaactccgtcaccatccccactctccattctagggtttactacttcccccaaggccacctcgaacactccacctcctcctcctccgctccggttcttctctcccctctcgtcctctcccagcccctcattctctgccgcatcgccgccgtccagttcctcgctgatcccaccaccgacgaggtcctcgccaagctcctcctccatcctgttcactccggactctcccctcaccaccgcgaactcagcgccgccgccgcggaggaggagcaggaggaggacgacgacggcggcgatagggtggtgtcgttcgctaagatcttgactccttccgatgctaacaatggcggtggtttctctgtcccgaggttctgtgctgactcgattttcccgccgcttaactaccaggctgagccgccggtccagacgctctccgtcaccgacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

186

Amino Acids

20.12

Weight (kDa)

5.89

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	3 cut(s)	56, 351, 371
AccIII	TCCGGA	1 cut(s)	329
AclWI	GGATC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	96, 145
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	2 cut(s)	73, 307
AluI	AGCT	2 cut(s)	73, 307
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	475
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	70
AspLEI	GCGC	3 cut(s)	58, 110, 362
AspS9I	GGNCC	2 cut(s)	295, 532
AsuHPI	GGTGA	4 cut(s)	8, 115, 335, 541
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	295, 532
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	89, 134, 324
BceAI	ACGGC	2 cut(s)	245, 415
BciT130I	CCWGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	363
BglII	AGATCT	1 cut(s)	429
BlpI	GCTNAGC	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	2 cut(s)	295, 532
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	295, 532
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	261, 436
Bpu1102I	GCTNAGC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	163, 369, 476
BsaWI	WCCGGW	2 cut(s)	202, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 145
Bse118I	RCCGGY	2 cut(s)	110, 529
Bse1I	ACTGG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	3 cut(s)	163, 369, 476
BseGI	GGATG	2 cut(s)	126, 316
BseLI	CCNNNNNNNGG	2 cut(s)	96, 145
BseMII	CTCAG	2 cut(s)	370, 513
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	8 cut(s)	178, 181, 184, 299, 302, 389, 392, 401
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	3 cut(s)	56, 351, 371
BshFI	GGCC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	4 cut(s)	111, 203, 330, 530
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	96, 145
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	277, 429
Bsp1720I	GCTNAGC	1 cut(s)	522
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	369, 514
BspEI	TCCGGA	1 cut(s)	329
BspFNI	CGCG	3 cut(s)	56, 351, 371
BspPI	GGATC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	110, 529
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	2 cut(s)	110, 529
BssECI	CCNNGG	3 cut(s)	163, 369, 476
BssMI	GATC	2 cut(s)	277, 429
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	102, 106, 112
BstDEI	CTNAG	3 cut(s)	356, 426, 522
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	126, 316
BstFNI	CGCG	3 cut(s)	56, 351, 371
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	3 cut(s)	58, 110, 362
BstKTI	GATC	2 cut(s)	280, 432
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	277, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 70, 357, 368
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstUI	CGCG	3 cut(s)	56, 351, 371
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	126, 316
Cac8I	GCNNGC	3 cut(s)	102, 106, 112
CfoI	GCGC	3 cut(s)	58, 110, 362
Cfr10I	RCCGGY	2 cut(s)	110, 529
Cfr13I	GGNCC	2 cut(s)	295, 532
Cfr42I	CCGCGG	1 cut(s)	372
CseI	GACGC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviJI	RGCY	7 cut(s)	73, 104, 168, 235, 307, 521, 526
CviKI_1	RGCY	7 cut(s)	73, 104, 168, 235, 307, 521, 526
DdeI	CTNAG	3 cut(s)	356, 426, 522
DpnI	GATC	2 cut(s)	279, 431
DpnII	GATC	2 cut(s)	277, 429
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	295, 532
Eco88I	CYCGRG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	82
FaqI	GGGAC	1 cut(s)	458
FauI	CCCGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	113, 303
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	3 cut(s)	57, 109, 361
GsaI	CCCAGC	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	4 cut(s)	111, 203, 330, 530
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	3 cut(s)	58, 110, 362
Hin6I	GCGC	3 cut(s)	56, 108, 360
HinP1I	GCGC	3 cut(s)	56, 108, 360
HinfI	GANTC	3 cut(s)	333, 436, 491
HpaII	CCGG	4 cut(s)	111, 203, 330, 530
HphI	GGTGA	4 cut(s)	8, 115, 335, 541
Hpy166II	GTNNAC	2 cut(s)	151, 325
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	330, 433, 475, 535
Hpy8I	GTNNAC	2 cut(s)	151, 325
Hpy99I	CGWCG	3 cut(s)	293, 398, 401
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 70, 357, 368
HpyF3I	CTNAG	3 cut(s)	356, 426, 522
HspAI	GCGC	3 cut(s)	56, 108, 360
Kpn2I	TCCGGA	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	277, 429
LmnI	GCTCC	3 cut(s)	205, 312, 379
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	261, 436
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	20, 121, 547
MalI	GATC	2 cut(s)	279, 431
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	2 cut(s)	277, 429
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	429
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	327, 430, 485
MroI	TCCGGA	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	111, 203, 330, 530
MspR9I	CCNGG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	3 cut(s)	56, 351, 371
MwoI	GCNNNNNNNGC	4 cut(s)	64, 70, 357, 368
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	2 cut(s)	277, 429
NgoMIV	GCCGGC	1 cut(s)	110
NmuCI	GTSAC	3 cut(s)	20, 121, 547
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 402
PdiI	GCCGGC	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	96
PleI	GAGTC	3 cut(s)	327, 430, 485
PpsI	GAGTC	3 cut(s)	327, 430, 485
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	516
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	295, 532
PspPPI	RGGWCCY	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	293
SacII	CCGCGG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	2 cut(s)	277, 429
Sau96I	GGNCC	2 cut(s)	295, 532
SchI	GAGTC	3 cut(s)	327, 430, 485
ScrFI	CCNGG	1 cut(s)	518
SetI	ASST	6 cut(s)	75, 174, 188, 297, 309, 482
SfaNI	GCATC	2 cut(s)	261, 436
Sfr303I	CCGCGG	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	295, 532
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	84, 174, 494
TasI	AATT	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	3 cut(s)	20, 121, 547
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	3 cut(s)	20, 121, 547
TspGWI	ACGGA	2 cut(s)	109, 535
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	295, 532
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.