Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

64209190 .. 64212009

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGACTGATGACTCGTCCAGGATGACTTGGATTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGGTCTTATCCCCATGGCGTATGCTTCAGGCTCGCAAAACTGATTGATGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACATTCACTTCATACTGTATATCCCCCCTCAAAGAGATTCAGAGCTCCACTGAATCCCGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATCCCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATTCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATAAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGTCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGCTAGTCCACAGTCTGATCAATTATCACCAGGTAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACGGCAACTCGACATTTGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTCAAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATGCCAAACTGCTTGAAAGGATTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

266

Amino Acids

29.31

Weight (kDa)

5.66

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	1 - 63	1.8e-07	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	301, 768
AcsI	RAATTY	2 cut(s)	299, 448
AcuI	CTGAAG	3 cut(s)	36, 82, 159
AfaI	GTAC	2 cut(s)	216, 728
AfiI	CCNNNNNNNGG	2 cut(s)	71, 317
AgsI	TTSAA	8 cut(s)	290, 333, 349, 364, 529, 653, 674, 785
AjnI	CCWGG	3 cut(s)	20, 398, 562
AluBI	AGCT	2 cut(s)	260, 326
AluI	AGCT	2 cut(s)	260, 326
Alw21I	GWGCWC	2 cut(s)	262, 467
Alw44I	GTGCAC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	301, 768
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	299, 448
Asp700I	GAANNNNTTC	1 cut(s)	643
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	175, 552
BaeGI	GKGCMC	2 cut(s)	44, 467
BanII	GRGCYC	2 cut(s)	170, 262
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	262, 467
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	3 cut(s)	22, 400, 564
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	4 cut(s)	22, 273, 400, 564
BmiI	GGNNCC	2 cut(s)	397, 611
BmrFI	CCNGG	4 cut(s)	22, 273, 400, 564
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	200, 679
BmuI	ACTGGG	1 cut(s)	714
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	85, 170, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 317
Bse1I	ACTGG	3 cut(s)	322, 709, 762
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	3 cut(s)	22, 400, 564
BseDI	CCNNGG	3 cut(s)	85, 170, 455
BseGI	GGATG	3 cut(s)	30, 136, 465
BseLI	CCNNNNNNNGG	2 cut(s)	71, 317
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	57, 272, 513
BseNI	ACTGG	3 cut(s)	322, 709, 762
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	2 cut(s)	44, 467
BseXI	GCAGC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	262, 467
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	71, 317
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	1 cut(s)	157
Bsp1286I	GDGCHC	4 cut(s)	44, 170, 262, 467
Bsp143I	GATC	4 cut(s)	306, 406, 550, 760
Bsp19I	CCATGG	2 cut(s)	85, 170
BspCNI	CTCAG	3 cut(s)	58, 273, 514
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	397, 611
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	2 cut(s)	301, 768
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	322, 709, 762
BssECI	CCNNGG	3 cut(s)	85, 170, 455
BssMI	GATC	4 cut(s)	306, 406, 550, 760
BssT1I	CCWWGG	2 cut(s)	85, 170
Bst2UI	CCWGG	3 cut(s)	22, 400, 564
Bst4CI	ACNGT	4 cut(s)	214, 232, 546, 713
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	105, 385, 389
BstDEI	CTNAG	4 cut(s)	66, 156, 281, 522
BstDSI	CCRYGG	2 cut(s)	85, 170
BstF5I	GGATG	3 cut(s)	30, 136, 465
BstKTI	GATC	4 cut(s)	309, 409, 553, 763
BstMBI	GATC	4 cut(s)	306, 406, 550, 760
BstNI	CCWGG	3 cut(s)	22, 400, 564
BstNSI	RCATGY	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	4 cut(s)	20, 271, 398, 562
BstSFI	CTRYAG	1 cut(s)	146
BstSLI	GKGCMC	2 cut(s)	44, 467
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	406, 760
BstYI	RGATCY	2 cut(s)	406, 760
BsuI	GTATCC	1 cut(s)	430
BtgI	CCRYGG	2 cut(s)	85, 170
BtsCI	GGATG	3 cut(s)	30, 136, 465
BtsIMutI	CAGTG	2 cut(s)	263, 702
Cac8I	GCNNGC	3 cut(s)	105, 385, 389
CciI	TCATGA	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	215, 727
CviAII	CATG	7 cut(s)	86, 126, 171, 304, 388, 493, 595
CviJI	RGCY	7 cut(s)	56, 103, 168, 260, 326, 398, 570
CviKI_1	RGCY	7 cut(s)	56, 103, 168, 260, 326, 398, 570
CviQI	GTAC	2 cut(s)	215, 727
DdeI	CTNAG	4 cut(s)	66, 156, 281, 522
DpnI	GATC	4 cut(s)	308, 408, 552, 762
DpnII	GATC	4 cut(s)	306, 406, 550, 760
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	85, 170
Eco24I	GRGCYC	2 cut(s)	170, 262
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	3 cut(s)	36, 82, 159
EcoICRI	GAGCTC	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	3 cut(s)	20, 398, 562
EcoT14I	CCWWGG	2 cut(s)	85, 170
EcoT38I	GRGCYC	2 cut(s)	170, 262
ErhI	CCWWGG	2 cut(s)	85, 170
FaeI	CATG	7 cut(s)	89, 129, 174, 307, 391, 496, 598
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	7 cut(s)	85, 125, 170, 303, 387, 492, 594
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	37, 143, 472
FriOI	GRGCYC	2 cut(s)	170, 262
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	339
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	7 cut(s)	89, 129, 174, 307, 391, 496, 598
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	14, 34, 252, 268
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	175, 552
Hpy166II	GTNNAC	5 cut(s)	181, 465, 519, 542, 581
Hpy188I	TCNGA	6 cut(s)	257, 459, 550, 638, 666, 747
Hpy188III	TCNNGA	3 cut(s)	65, 304, 501
Hpy8I	GTNNAC	5 cut(s)	181, 465, 519, 542, 581
HpyAV	CCTTC	2 cut(s)	210, 284
HpyCH4III	ACNGT	4 cut(s)	214, 232, 546, 713
HpyCH4V	TGCA	5 cut(s)	148, 191, 391, 465, 702
HpyF3I	CTNAG	4 cut(s)	66, 156, 281, 522
Hsp92II	CATG	7 cut(s)	89, 129, 174, 307, 391, 496, 598
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	4 cut(s)	306, 406, 550, 760
LmnI	GCTCC	3 cut(s)	265, 320, 395
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	200, 679
MabI	ACCWGGT	1 cut(s)	562
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	308, 408, 552, 762
MboI	GATC	4 cut(s)	306, 406, 550, 760
MboII	GAAGA	5 cut(s)	42, 197, 308, 345, 651
MflI	RGATCY	2 cut(s)	406, 760
MhlI	GDGCHC	4 cut(s)	44, 170, 262, 467
MluCI	AATT	8 cut(s)	285, 299, 328, 344, 349, 448, 472, 554
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	4 cut(s)	153, 253, 465, 504
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	1 cut(s)	440
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	4 cut(s)	22, 273, 400, 564
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	3 cut(s)	22, 400, 564
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	2 cut(s)	85, 170
NdeII	GATC	4 cut(s)	306, 406, 550, 760
NlaIII	CATG	7 cut(s)	89, 129, 174, 307, 391, 496, 598
NlaIV	GGNNCC	2 cut(s)	397, 611
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PagI	TCATGA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	34, 252, 268
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PshAI	GACNNNNGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	20, 398, 562
PspGI	CCWGG	3 cut(s)	20, 398, 562
PspN4I	GGNNCC	2 cut(s)	397, 611
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	406, 760
RsaI	GTAC	2 cut(s)	216, 728
RsaNI	GTAC	2 cut(s)	215, 727
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	306, 406, 550, 760
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	4 cut(s)	22, 273, 400, 564
SduI	GDGCHC	4 cut(s)	44, 170, 262, 467
SetI	ASST	7 cut(s)	139, 202, 262, 328, 470, 568, 685
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	200, 679
SfcI	CTRYAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	8 cut(s)	285, 299, 328, 344, 349, 448, 472, 554
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	4 cut(s)	20, 271, 398, 562
StyI	CCWWGG	2 cut(s)	85, 170
TaaI	ACNGT	4 cut(s)	214, 232, 546, 713
TaqI	TCGA	1 cut(s)	626
TasI	AATT	8 cut(s)	285, 299, 328, 344, 349, 448, 472, 554
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	34, 252, 268
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	270, 709
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	147, 197, 215, 292, 747
TspRI	CASTG	2 cut(s)	270, 709
VneI	GTGCAC	1 cut(s)	463
XapI	RAATTY	2 cut(s)	299, 448
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.