Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 15 |
| AciI | CCGC | 2 cut(s) | 142, 1060 |
| AclI | AACGTT | 1 cut(s) | 733 |
| AcsI | RAATTY | 6 cut(s) | 81, 189, 711, 806, 1108, 1301 |
| AcuI | CTGAAG | 2 cut(s) | 323, 1362 |
| AfaI | GTAC | 1 cut(s) | 1383 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 405 |
| AflII | CTTAAG | 1 cut(s) | 422 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 320, 352 |
| Alw26I | GTCTC | 2 cut(s) | 214, 421 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1098 |
| AoxI | GGCC | 3 cut(s) | 418, 474, 1038 |
| ApeKI | GCWGC | 4 cut(s) | 115, 482, 1009, 1057 |
| ApoI | RAATTY | 6 cut(s) | 81, 189, 711, 806, 1108, 1301 |
| AspS9I | GGNCC | 3 cut(s) | 418, 475, 1038 |
| AsuHPI | GGTGA | 1 cut(s) | 956 |
| BauI | CACGAG | 1 cut(s) | 762 |
| BbvI | GCAGC | 4 cut(s) | 127, 494, 996, 1044 |
| BccI | CCATC | 1 cut(s) | 37 |
| BclI | TGATCA | 1 cut(s) | 120 |
| BcoDI | GTCTC | 2 cut(s) | 214, 421 |
| BfaI | CTAG | 2 cut(s) | 708, 1229 |
| BfmI | CTRYAG | 2 cut(s) | 441, 1010 |
| BfrI | CTTAAG | 1 cut(s) | 422 |
| BglII | AGATCT | 3 cut(s) | 490, 672, 1374 |
| BisI | GCNGC | 4 cut(s) | 116, 483, 1010, 1058 |
| BlpI | GCTNAGC | 2 cut(s) | 60, 138 |
| BlsI | GCNGC | 4 cut(s) | 117, 484, 1011, 1059 |
| BmgT120I | GGNCC | 3 cut(s) | 418, 475, 1038 |
| BmiI | GGNNCC | 1 cut(s) | 1039 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1301, 1333 |
| BpmI | CTGGAG | 1 cut(s) | 401 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1070 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 60, 138 |
| BpuEI | CTTGAG | 5 cut(s) | 38, 147, 180, 531, 989 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 405 |
| Bse1I | ACTGG | 3 cut(s) | 321, 384, 399 |
| BseGI | GGATG | 3 cut(s) | 832, 892, 1372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 405 |
| BseMII | CTCAG | 6 cut(s) | 51, 485, 851, 1034, 1173, 1232 |
| BseNI | ACTGG | 3 cut(s) | 321, 384, 399 |
| BseRI | GAGGAG | 1 cut(s) | 542 |
| BseXI | GCAGC | 4 cut(s) | 127, 494, 996, 1044 |
| BseYI | CCCAGC | 1 cut(s) | 1034 |
| BshFI | GGCC | 3 cut(s) | 420, 476, 1040 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 405 |
| BsmAI | GTCTC | 2 cut(s) | 214, 421 |
| BsmBI | CGTCTC | 1 cut(s) | 421 |
| BsmI | GAATGC | 1 cut(s) | 394 |
| BsnI | GGCC | 3 cut(s) | 420, 476, 1040 |
| Bsp143I | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 60, 138 |
| BspACI | CCGC | 2 cut(s) | 142, 1060 |
| BspANI | GGCC | 3 cut(s) | 420, 476, 1040 |
| BspCNI | CTCAG | 6 cut(s) | 52, 486, 850, 1033, 1174, 1231 |
| BspLI | GGNNCC | 1 cut(s) | 1039 |
| BspMAI | CTGCAG | 1 cut(s) | 1014 |
| BspTI | CTTAAG | 1 cut(s) | 422 |
| BsrI | ACTGG | 3 cut(s) | 321, 384, 399 |
| BssMI | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| BssSI | CACGAG | 1 cut(s) | 762 |
| Bst2BI | CACGAG | 1 cut(s) | 762 |
| Bst4CI | ACNGT | 5 cut(s) | 110, 877, 1094, 1100, 1395 |
| Bst6I | CTCTTC | 3 cut(s) | 663, 885, 1260 |
| BstAFI | CTTAAG | 1 cut(s) | 422 |
| BstC8I | GCNNGC | 1 cut(s) | 1086 |
| BstF5I | GGATG | 3 cut(s) | 832, 892, 1372 |
| BstKTI | GATC | 9 cut(s) | 123, 295, 493, 553, 616, 675, 1026, 1251, 1377 |
| BstMAI | GTCTC | 2 cut(s) | 214, 421 |
| BstMBI | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 280, 482, 1066 |
| BstSFI | CTRYAG | 2 cut(s) | 441, 1010 |
| BstV1I | GCAGC | 4 cut(s) | 127, 494, 996, 1044 |
| BstX2I | RGATCY | 3 cut(s) | 490, 672, 1374 |
| BstYI | RGATCY | 3 cut(s) | 490, 672, 1374 |
| BsuRI | GGCC | 3 cut(s) | 420, 476, 1040 |
| BtsCI | GGATG | 3 cut(s) | 832, 892, 1372 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 845 |
| Cac8I | GCNNGC | 1 cut(s) | 1086 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1098 |
| Cfr13I | GGNCC | 3 cut(s) | 418, 475, 1038 |
| CseI | GACGC | 1 cut(s) | 438 |
| Csp6I | GTAC | 1 cut(s) | 1382 |
| CviAII | CATG | 2 cut(s) | 236, 275 |
| CviQI | GTAC | 1 cut(s) | 1382 |
| DpnI | GATC | 9 cut(s) | 122, 294, 492, 552, 615, 674, 1025, 1250, 1376 |
| DpnII | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| DraI | TTTAAA | 1 cut(s) | 580 |
| Eam1104I | CTCTTC | 3 cut(s) | 663, 885, 1260 |
| EarI | CTCTTC | 3 cut(s) | 663, 885, 1260 |
| Eco57I | CTGAAG | 2 cut(s) | 323, 1362 |
| EcoO109I | RGGNCCY | 1 cut(s) | 418 |
| EcoRI | GAATTC | 3 cut(s) | 711, 806, 1301 |
| Esp3I | CGTCTC | 1 cut(s) | 421 |
| FaeI | CATG | 2 cut(s) | 239, 278 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FatI | CATG | 2 cut(s) | 235, 274 |
| FauI | CCCGC | 1 cut(s) | 135 |
| FbaI | TGATCA | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 4 cut(s) | 116, 483, 1010, 1058 |
| FokI | GGATG | 3 cut(s) | 839, 899, 1379 |
| Fsp4HI | GCNGC | 4 cut(s) | 116, 483, 1010, 1058 |
| FspBI | CTAG | 2 cut(s) | 708, 1229 |
| GluI | GCNGC | 4 cut(s) | 116, 483, 1010, 1058 |
| GsaI | CCCAGC | 1 cut(s) | 1038 |
| GsuI | CTGGAG | 1 cut(s) | 401 |
| HaeIII | GGCC | 3 cut(s) | 420, 476, 1040 |
| HgaI | GACGC | 1 cut(s) | 438 |
| Hin1II | CATG | 2 cut(s) | 239, 278 |
| HindIII | AAGCTT | 5 cut(s) | 179, 691, 753, 868, 1067 |
| HinfI | GANTC | 6 cut(s) | 245, 698, 979, 995, 1016, 1124 |
| HphI | GGTGA | 1 cut(s) | 956 |
| Hpy188III | TCNNGA | 8 cut(s) | 164, 296, 407, 548, 587, 764, 983, 1104 |
| HpyAV | CCTTC | 4 cut(s) | 70, 314, 597, 1183 |
| HpyCH4III | ACNGT | 5 cut(s) | 110, 877, 1094, 1100, 1395 |
| HpyCH4IV | ACGT | 2 cut(s) | 733, 817 |
| HpyCH4V | TGCA | 6 cut(s) | 235, 274, 685, 747, 1012, 1210 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 280, 482, 1066 |
| HpySE526I | ACGT | 2 cut(s) | 733, 817 |
| Hsp92II | CATG | 2 cut(s) | 239, 278 |
| Ksp22I | TGATCA | 1 cut(s) | 120 |
| Kzo9I | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| LmnI | GCTCC | 5 cut(s) | 288, 382, 1081, 1225, 1348 |
| Lsp1109I | GCAGC | 4 cut(s) | 127, 494, 996, 1044 |
| MaeI | CTAG | 2 cut(s) | 708, 1229 |
| MaeII | ACGT | 2 cut(s) | 733, 817 |
| MaeIII | GTNAC | 3 cut(s) | 455, 1094, 1355 |
| MalI | GATC | 9 cut(s) | 122, 294, 492, 552, 615, 674, 1025, 1250, 1376 |
| MboI | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| MboII | GAAGA | 9 cut(s) | 109, 577, 602, 680, 779, 902, 1162, 1277, 1282 |
| MfeI | CAATTG | 2 cut(s) | 554, 915 |
| MflI | RGATCY | 3 cut(s) | 490, 672, 1374 |
| MmeI | TCCRAC | 2 cut(s) | 1203, 1377 |
| MseI | TTAA | 8 cut(s) | 423, 579, 621, 717, 872, 989, 1002, 1259 |
| MspA1I | CMGCKG | 1 cut(s) | 118 |
| MspCI | CTTAAG | 1 cut(s) | 422 |
| MssI | GTTTAAAC | 1 cut(s) | 580 |
| MunI | CAATTG | 2 cut(s) | 554, 915 |
| Mva1269I | GAATGC | 1 cut(s) | 394 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 280, 482, 1066 |
| NdeII | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| NlaIII | CATG | 2 cut(s) | 239, 278 |
| NlaIV | GGNNCC | 1 cut(s) | 1039 |
| NmuCI | GTSAC | 1 cut(s) | 1355 |
| PctI | GAATGC | 1 cut(s) | 394 |
| PfeI | GAWTC | 6 cut(s) | 245, 698, 979, 995, 1016, 1124 |
| PflFI | GACNNNGTC | 1 cut(s) | 29 |
| PkrI | GCNGC | 4 cut(s) | 117, 484, 1011, 1059 |
| PmeI | GTTTAAAC | 1 cut(s) | 580 |
| PsiI | TTATAA | 1 cut(s) | 15 |
| Psp1406I | AACGTT | 1 cut(s) | 733 |
| PspFI | CCCAGC | 1 cut(s) | 1034 |
| PspN4I | GGNNCC | 1 cut(s) | 1039 |
| PspPI | GGNCC | 3 cut(s) | 418, 475, 1038 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 913, 945 |
| PstI | CTGCAG | 1 cut(s) | 1014 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1098 |
| PsuI | RGATCY | 3 cut(s) | 490, 672, 1374 |
| PsyI | GACNNNGTC | 1 cut(s) | 29 |
| PvuII | CAGCTG | 1 cut(s) | 118 |
| RsaI | GTAC | 1 cut(s) | 1383 |
| RsaNI | GTAC | 1 cut(s) | 1382 |
| SaqAI | TTAA | 8 cut(s) | 423, 579, 621, 717, 872, 989, 1002, 1259 |
| SatI | GCNGC | 4 cut(s) | 116, 483, 1010, 1058 |
| Sau3AI | GATC | 9 cut(s) | 120, 292, 490, 550, 613, 672, 1023, 1248, 1374 |
| Sau96I | GGNCC | 3 cut(s) | 418, 475, 1038 |
| SfcI | CTRYAG | 2 cut(s) | 441, 1010 |
| SmlI | CTYRAG | 6 cut(s) | 53, 162, 195, 422, 546, 968 |
| SmoI | CTYRAG | 6 cut(s) | 53, 162, 195, 422, 546, 968 |
| SsiI | CCGC | 2 cut(s) | 142, 1060 |
| SspMI | CTAG | 2 cut(s) | 708, 1229 |
| TaaI | ACNGT | 5 cut(s) | 110, 877, 1094, 1100, 1395 |
| TaiI | ACGT | 2 cut(s) | 736, 820 |
| TaqI | TCGA | 1 cut(s) | 1251 |
| TatI | WGTACW | 1 cut(s) | 1381 |
| TfiI | GAWTC | 6 cut(s) | 245, 698, 979, 995, 1016, 1124 |
| Tru1I | TTAA | 8 cut(s) | 423, 579, 621, 717, 872, 989, 1002, 1259 |
| Tru9I | TTAA | 8 cut(s) | 423, 579, 621, 717, 872, 989, 1002, 1259 |
| TscAI | CASTG | 2 cut(s) | 115, 845 |
| TseFI | GTSAC | 1 cut(s) | 1355 |
| TseI | GCWGC | 4 cut(s) | 115, 482, 1009, 1057 |
| Tsp45I | GTSAC | 1 cut(s) | 1355 |
| TspDTI | ATGAA | 7 cut(s) | 201, 252, 291, 369, 533, 903, 1169 |
| TspRI | CASTG | 2 cut(s) | 115, 845 |
| Tth111I | GACNNNGTC | 1 cut(s) | 29 |
| Vha464I | CTTAAG | 1 cut(s) | 422 |
| XapI | RAATTY | 6 cut(s) | 81, 189, 711, 806, 1108, 1301 |
| XspI | CTAG | 2 cut(s) | 708, 1229 |