Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L23 | PF00276 | 30 - 90 | 5.4e-15 | Ribosomal protein L23 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 138, 230 |
| AciI | CCGC | 4 cut(s) | 114, 211, 216, 272 |
| AclWI | GGATC | 1 cut(s) | 454 |
| AcsI | RAATTY | 1 cut(s) | 89 |
| AcuI | CTGAAG | 1 cut(s) | 284 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 190, 458 |
| AluBI | AGCT | 2 cut(s) | 55, 72 |
| AluI | AGCT | 2 cut(s) | 55, 72 |
| AlwI | GGATC | 1 cut(s) | 454 |
| Ama87I | CYCGRG | 1 cut(s) | 143 |
| AoxI | GGCC | 1 cut(s) | 217 |
| ApoI | RAATTY | 1 cut(s) | 89 |
| AspLEI | GCGC | 2 cut(s) | 138, 292 |
| AspS9I | GGNCC | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 261, 433 |
| AvaI | CYCGRG | 1 cut(s) | 143 |
| AvaII | GGWCC | 1 cut(s) | 175 |
| BauI | CACGAG | 1 cut(s) | 67 |
| BccI | CCATC | 5 cut(s) | 56, 113, 325, 392, 400 |
| BceAI | ACGGC | 3 cut(s) | 172, 211, 481 |
| BfaI | CTAG | 2 cut(s) | 357, 505 |
| BfoI | RGCGCY | 1 cut(s) | 293 |
| BisI | GCNGC | 1 cut(s) | 217 |
| BlsI | GCNGC | 1 cut(s) | 218 |
| Bme18I | GGWCC | 1 cut(s) | 175 |
| BmeT110I | CYCGRG | 1 cut(s) | 143 |
| BmgT120I | GGNCC | 1 cut(s) | 175 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 433, 465 |
| BsaBI | GATNNNNATC | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 1 cut(s) | 482 |
| BsaWI | WCCGGW | 1 cut(s) | 451 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 190, 458 |
| Bse8I | GATNNNNATC | 1 cut(s) | 128 |
| BseDI | CCNNGG | 1 cut(s) | 482 |
| BseGI | GGATG | 2 cut(s) | 105, 403 |
| BseJI | GATNNNNATC | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 190, 458 |
| BseRI | GAGGAG | 2 cut(s) | 431, 439 |
| Bsh1236I | CGCG | 2 cut(s) | 138, 230 |
| BshFI | GGCC | 1 cut(s) | 219 |
| BsiHKCI | CYCGRG | 1 cut(s) | 143 |
| BsiSI | CCGG | 1 cut(s) | 452 |
| BsiWI | CGTACG | 1 cut(s) | 252 |
| BslFI | GGGAC | 1 cut(s) | 133 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 190, 458 |
| BsmFI | GGGAC | 1 cut(s) | 133 |
| BsnI | GGCC | 1 cut(s) | 219 |
| BsoBI | CYCGRG | 1 cut(s) | 143 |
| Bsp143I | GATC | 4 cut(s) | 123, 165, 225, 446 |
| Bsp19I | CCATGG | 1 cut(s) | 482 |
| Bsp68I | TCGCGA | 1 cut(s) | 230 |
| BspACI | CCGC | 4 cut(s) | 114, 211, 216, 272 |
| BspANI | GGCC | 1 cut(s) | 219 |
| BspFNI | CGCG | 2 cut(s) | 138, 230 |
| BspPI | GGATC | 1 cut(s) | 454 |
| BssECI | CCNNGG | 1 cut(s) | 482 |
| BssMI | GATC | 4 cut(s) | 123, 165, 225, 446 |
| BssSI | CACGAG | 1 cut(s) | 67 |
| BssT1I | CCWWGG | 1 cut(s) | 482 |
| Bst2BI | CACGAG | 1 cut(s) | 67 |
| BstC8I | GCNNGC | 1 cut(s) | 221 |
| BstDSI | CCRYGG | 1 cut(s) | 482 |
| BstF5I | GGATG | 2 cut(s) | 105, 403 |
| BstFNI | CGCG | 2 cut(s) | 138, 230 |
| BstH2I | RGCGCY | 1 cut(s) | 293 |
| BstHHI | GCGC | 2 cut(s) | 138, 292 |
| BstKTI | GATC | 4 cut(s) | 126, 168, 228, 449 |
| BstMBI | GATC | 4 cut(s) | 123, 165, 225, 446 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 61, 357 |
| BstUI | CGCG | 2 cut(s) | 138, 230 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BsuRI | GGCC | 1 cut(s) | 219 |
| BtgI | CCRYGG | 1 cut(s) | 482 |
| BtsCI | GGATG | 2 cut(s) | 105, 403 |
| BtuMI | TCGCGA | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 1 cut(s) | 221 |
| CfoI | GCGC | 2 cut(s) | 138, 292 |
| Cfr13I | GGNCC | 1 cut(s) | 175 |
| CseI | GACGC | 2 cut(s) | 127, 349 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CviAII | CATG | 2 cut(s) | 190, 483 |
| CviJI | RGCY | 5 cut(s) | 55, 72, 159, 219, 394 |
| CviKI_1 | RGCY | 5 cut(s) | 55, 72, 159, 219, 394 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DpnI | GATC | 4 cut(s) | 125, 167, 227, 448 |
| DpnII | GATC | 4 cut(s) | 123, 165, 225, 446 |
| EciI | GGCGGA | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 1 cut(s) | 482 |
| Eco47I | GGWCC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 284 |
| Eco88I | CYCGRG | 1 cut(s) | 143 |
| EcoRI | GAATTC | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 482 |
| ErhI | CCWWGG | 1 cut(s) | 482 |
| FaeI | CATG | 2 cut(s) | 193, 486 |
| FaiI | YATR | 4 cut(s) | 191, 438, 484, 494 |
| FaqI | GGGAC | 1 cut(s) | 133 |
| FatI | CATG | 2 cut(s) | 189, 482 |
| FauI | CCCGC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 217 |
| FokI | GGATG | 2 cut(s) | 92, 410 |
| Fsp4HI | GCNGC | 1 cut(s) | 217 |
| FspBI | CTAG | 2 cut(s) | 357, 505 |
| GlaI | GCGC | 2 cut(s) | 137, 291 |
| GluI | GCNGC | 1 cut(s) | 217 |
| HaeII | RGCGCY | 1 cut(s) | 293 |
| HaeIII | GGCC | 1 cut(s) | 219 |
| HapII | CCGG | 1 cut(s) | 452 |
| HgaI | GACGC | 2 cut(s) | 127, 349 |
| HhaI | GCGC | 2 cut(s) | 138, 292 |
| Hin1II | CATG | 2 cut(s) | 193, 486 |
| Hin6I | GCGC | 2 cut(s) | 136, 290 |
| HinP1I | GCGC | 2 cut(s) | 136, 290 |
| HinfI | GANTC | 1 cut(s) | 146 |
| HpaII | CCGG | 1 cut(s) | 452 |
| HphI | GGTGA | 3 cut(s) | 67, 261, 433 |
| Hpy166II | GTNNAC | 1 cut(s) | 31 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 179, 300 |
| Hpy188III | TCNNGA | 2 cut(s) | 163, 229 |
| Hpy8I | GTNNAC | 1 cut(s) | 31 |
| Hpy99I | CGWCG | 3 cut(s) | 365, 368, 467 |
| HpyAV | CCTTC | 3 cut(s) | 241, 365, 406 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 61, 357 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92II | CATG | 2 cut(s) | 193, 486 |
| HspAI | GCGC | 2 cut(s) | 136, 290 |
| Kzo9I | GATC | 4 cut(s) | 123, 165, 225, 446 |
| LmnI | GCTCC | 3 cut(s) | 18, 60, 486 |
| LpnPI | CCDG | 4 cut(s) | 233, 302, 380, 465 |
| MaeI | CTAG | 2 cut(s) | 357, 505 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MaeIII | GTNAC | 2 cut(s) | 256, 267 |
| MalI | GATC | 4 cut(s) | 125, 167, 227, 448 |
| MboI | GATC | 4 cut(s) | 123, 165, 225, 446 |
| MboII | GAAGA | 7 cut(s) | 133, 214, 217, 334, 352, 394, 415 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MluCI | AATT | 1 cut(s) | 89 |
| MlyI | GAGTC | 1 cut(s) | 155 |
| MspA1I | CMGCKG | 1 cut(s) | 274 |
| MspI | CCGG | 1 cut(s) | 452 |
| MvnI | CGCG | 2 cut(s) | 138, 230 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 61, 357 |
| NcoI | CCATGG | 1 cut(s) | 482 |
| NdeII | GATC | 4 cut(s) | 123, 165, 225, 446 |
| NlaIII | CATG | 2 cut(s) | 193, 486 |
| NmeAIII | GCCGAG | 1 cut(s) | 266 |
| NmuCI | GTSAC | 2 cut(s) | 256, 267 |
| NruI | TCGCGA | 1 cut(s) | 230 |
| PaeR7I | CTCGAG | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 234, 372 |
| Pfl23II | CGTACG | 1 cut(s) | 252 |
| PflFI | GACNNNGTC | 1 cut(s) | 173 |
| PkrI | GCNGC | 1 cut(s) | 218 |
| PleI | GAGTC | 1 cut(s) | 154 |
| PpsI | GAGTC | 1 cut(s) | 154 |
| PspLI | CGTACG | 1 cut(s) | 252 |
| PspPI | GGNCC | 1 cut(s) | 175 |
| PspXI | VCTCGAGB | 1 cut(s) | 143 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| PsyI | GACNNNGTC | 1 cut(s) | 173 |
| RruI | TCGCGA | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| SatI | GCNGC | 1 cut(s) | 217 |
| Sau3AI | GATC | 4 cut(s) | 123, 165, 225, 446 |
| Sau96I | GGNCC | 1 cut(s) | 175 |
| SchI | GAGTC | 1 cut(s) | 155 |
| SetI | ASST | 7 cut(s) | 45, 57, 74, 177, 258, 423, 500 |
| Sfr274I | CTCGAG | 1 cut(s) | 143 |
| SinI | GGWCC | 1 cut(s) | 175 |
| SlaI | CTCGAG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| Sse9I | AATT | 1 cut(s) | 89 |
| SsiI | CCGC | 4 cut(s) | 114, 211, 216, 272 |
| SspMI | CTAG | 2 cut(s) | 357, 505 |
| StyI | CCWWGG | 1 cut(s) | 482 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 7 cut(s) | 119, 126, 144, 162, 168, 347, 366 |
| TasI | AATT | 1 cut(s) | 89 |
| TauI | GCSGC | 1 cut(s) | 219 |
| TseFI | GTSAC | 2 cut(s) | 256, 267 |
| Tsp45I | GTSAC | 2 cut(s) | 256, 267 |
| Tth111I | GACNNNGTC | 1 cut(s) | 173 |
| VpaK11BI | GGWCC | 1 cut(s) | 175 |
| XapI | RAATTY | 1 cut(s) | 89 |
| XhoI | CTCGAG | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 357, 505 |