Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

3220062 .. 3221841

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGGTGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGCGGAACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCGTCGCCGGCGACTCTGTGGTGTTTATGAGGAGCTCCAGAGGTGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGTTCTGGAGAATGCTAAAAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACCTTCGCTTCATACTGTATATTCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCCTGTCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATGACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATCCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTGCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTTAAGAGGGTGTCTAGCGAGTTGACCATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

8.51

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 62	2.4e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	5, 17, 54, 70, 82, 84
AclWI	GGATC	2 cut(s)	205, 218
AcsI	RAATTY	2 cut(s)	389, 538
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	3 cut(s)	117, 207, 407
AgsI	TTSAA	3 cut(s)	423, 439, 454
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	3 cut(s)	180, 350, 416
AluI	AGCT	3 cut(s)	180, 350, 416
Alw21I	GWGCWC	3 cut(s)	182, 352, 557
Alw26I	GTCTC	1 cut(s)	334
Alw44I	GTGCAC	1 cut(s)	553
AlwI	GGATC	2 cut(s)	205, 218
AoxI	GGCC	1 cut(s)	198
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	389, 538
AspS9I	GGNCC	2 cut(s)	22, 198
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	4 cut(s)	31, 100, 265, 642
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	3 cut(s)	182, 260, 352
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
Bbv12I	GWGCWC	3 cut(s)	182, 352, 557
BbvI	GCAGC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	490
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	3 cut(s)	17, 55, 414
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	3 cut(s)	18, 56, 415
Bme1390I	CCNGG	2 cut(s)	94, 490
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 198
BmiI	GGNNCC	3 cut(s)	212, 487, 588
BmrFI	CCNGG	2 cut(s)	94, 490
BmsI	GCATC	2 cut(s)	132, 290
BpmI	CTGGAG	3 cut(s)	139, 166, 257
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	6 cut(s)	82, 92, 201, 216, 260, 590
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 207, 407
Bse118I	RCCGGY	3 cut(s)	19, 113, 152
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	6 cut(s)	82, 92, 201, 216, 260, 590
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	3 cut(s)	117, 207, 407
BseMII	CTCAG	2 cut(s)	358, 362
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	586
BsiHKAI	GWGCWC	3 cut(s)	182, 352, 557
BsiSI	CCGG	5 cut(s)	20, 94, 114, 153, 408
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	117, 207, 407
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	182, 260, 352, 557
Bsp143I	GATC	3 cut(s)	210, 496, 640
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	2 cut(s)	216, 260
BspACI	CCGC	6 cut(s)	5, 17, 54, 70, 82, 84
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	3 cut(s)	4, 357, 363
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	212, 487, 588
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	205, 218
BspT107I	GGYRCC	1 cut(s)	586
BsrFI	RCCGGY	3 cut(s)	19, 113, 152
BssAI	RCCGGY	3 cut(s)	19, 113, 152
BssECI	CCNNGG	6 cut(s)	82, 92, 201, 216, 260, 590
BssMI	GATC	3 cut(s)	210, 496, 640
BssT1I	CCWWGG	4 cut(s)	201, 216, 260, 590
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	304, 322, 636
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	154, 475, 479
BstDEI	CTNAG	3 cut(s)	12, 344, 371
BstDSI	CCRYGG	3 cut(s)	82, 216, 260
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	213, 499, 643
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	210, 496, 640
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	92, 488
BstSLI	GKGCMC	1 cut(s)	557
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	2 cut(s)	210, 496
BstYI	RGATCY	2 cut(s)	210, 496
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	3 cut(s)	82, 216, 260
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	353
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	154, 475, 479
CciI	TCATGA	1 cut(s)	393
Cfr10I	RCCGGY	3 cut(s)	19, 113, 152
Cfr13I	GGNCC	2 cut(s)	22, 198
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	6 cut(s)	217, 261, 394, 478, 583, 685
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	12, 344, 371
DpnI	GATC	3 cut(s)	212, 498, 642
DpnII	GATC	3 cut(s)	210, 496, 640
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	2 cut(s)	180, 350
Eco130I	CCWWGG	4 cut(s)	201, 216, 260, 590
Eco24I	GRGCYC	3 cut(s)	182, 260, 352
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	180, 350
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	2 cut(s)	180, 350
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	4 cut(s)	201, 216, 260, 590
EcoT38I	GRGCYC	3 cut(s)	182, 260, 352
ErhI	CCWWGG	4 cut(s)	201, 216, 260, 590
FaeI	CATG	6 cut(s)	220, 264, 397, 481, 586, 688
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	216, 260, 393, 477, 582, 684
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	3 cut(s)	17, 55, 414
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	3 cut(s)	182, 260, 352
Fsp4HI	GCNGC	3 cut(s)	17, 55, 414
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	3 cut(s)	17, 55, 414
GsuI	CTGGAG	3 cut(s)	139, 166, 257
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	5 cut(s)	20, 94, 114, 153, 408
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	6 cut(s)	220, 264, 397, 481, 586, 688
HincII	GTYRAC	2 cut(s)	271, 618
HindII	GTYRAC	2 cut(s)	271, 618
HinfI	GANTC	3 cut(s)	158, 342, 358
HpaII	CCGG	5 cut(s)	20, 94, 114, 153, 408
HphI	GGTGA	4 cut(s)	31, 100, 265, 642
Hpy166II	GTNNAC	5 cut(s)	271, 555, 618, 632, 671
Hpy188I	TCNGA	3 cut(s)	347, 549, 640
Hpy188III	TCNNGA	4 cut(s)	25, 183, 236, 394
Hpy8I	GTNNAC	5 cut(s)	271, 555, 618, 632, 671
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	200, 300, 318
HpyCH4III	ACNGT	3 cut(s)	304, 322, 636
HpyCH4V	TGCA	4 cut(s)	49, 281, 481, 555
HpyF3I	CTNAG	3 cut(s)	12, 344, 371
Hsp92II	CATG	6 cut(s)	220, 264, 397, 481, 586, 688
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	640
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	210, 496, 640
LmnI	GCTCC	6 cut(s)	120, 177, 185, 355, 410, 485
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	2 cut(s)	132, 290
MaeI	CTAG	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	212, 498, 642
MboI	GATC	3 cut(s)	210, 496, 640
MboII	GAAGA	2 cut(s)	287, 398
MflI	RGATCY	2 cut(s)	210, 496
MhlI	GDGCHC	4 cut(s)	182, 260, 352, 557
MluCI	AATT	7 cut(s)	389, 418, 434, 538, 562, 644, 700
MlyI	GAGTC	2 cut(s)	152, 336
MnlI	CCTC	5 cut(s)	90, 168, 179, 376, 594
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	2 cut(s)	530, 597
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	5 cut(s)	20, 94, 114, 153, 408
MspR9I	CCNGG	2 cut(s)	94, 490
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	84
NaeI	GCCGGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	216, 260
NdeII	GATC	3 cut(s)	210, 496, 640
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	6 cut(s)	220, 264, 397, 481, 586, 688
NlaIV	GGNNCC	3 cut(s)	212, 487, 588
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	481
PaeI	GCATGC	1 cut(s)	481
PagI	TCATGA	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	18, 56, 415
PleI	GAGTC	2 cut(s)	152, 336
PpsI	GAGTC	2 cut(s)	152, 336
Psp124BI	GAGCTC	2 cut(s)	182, 352
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	212, 487, 588
PspPI	GGNCC	2 cut(s)	22, 198
PsuI	RGATCY	2 cut(s)	210, 496
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SacI	GAGCTC	2 cut(s)	182, 352
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	530, 597
SatI	GCNGC	3 cut(s)	17, 55, 414
Sau3AI	GATC	3 cut(s)	210, 496, 640
Sau96I	GGNCC	2 cut(s)	22, 198
SchI	GAGTC	2 cut(s)	152, 336
ScrFI	CCNGG	2 cut(s)	94, 490
SduI	GDGCHC	4 cut(s)	182, 260, 352, 557
SfaNI	GCATC	2 cut(s)	132, 290
Sfr303I	CCGCGG	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	152
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	22
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	7 cut(s)	389, 418, 434, 538, 562, 644, 700
SsiI	CCGC	6 cut(s)	5, 17, 54, 70, 82, 84
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	2 cut(s)	182, 352
StyD4I	CCNGG	2 cut(s)	92, 488
StyI	CCWWGG	4 cut(s)	201, 216, 260, 590
TaaI	ACNGT	3 cut(s)	304, 322, 636
TasI	AATT	7 cut(s)	389, 418, 434, 538, 562, 644, 700
TauI	GCSGC	2 cut(s)	19, 57
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	530, 597
Tru9I	TTAA	2 cut(s)	530, 597
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	287, 305, 382, 549
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	117
VneI	GTGCAC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	389, 538
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.