Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

3447772 .. 3449003

Gene Structure 1232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000668

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTACGTCGGGGTAAGGCGGACCGTGAGGGCTAGTTCCGGCGGCGATTTCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAAGTGACGGATTTAAGACTAAGCTTTCGGCTGAGGCTGTGGCTGTGGCGGAGGCTGCCGAGATGGCGGCACAGGACATGCCATTTGAGGTGATGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGATGTGGTGGAGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

132

Amino Acids

14.19

Weight (kDa)

4.99

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	5 cut(s)	19, 42, 149, 167, 328
AclWI	GGATC	2 cut(s)	355, 368
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	98, 363
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	209, 345, 357
AluBI	AGCT	3 cut(s)	63, 124, 209
AluI	AGCT	3 cut(s)	63, 124, 209
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	355, 368
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	3 cut(s)	216, 285, 348
ApeKI	GCWGC	1 cut(s)	155
ArsI	GACNNNNNNTTYG	4 cut(s)	109, 141, 167, 199
AspS9I	GGNCC	3 cut(s)	21, 216, 348
AsuHPI	GGTGA	2 cut(s)	202, 241
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	157, 277
BceAI	ACGGC	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	45
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	43, 156, 168
BlsI	GCNGC	3 cut(s)	44, 157, 169
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	21, 216, 348
BmiI	GGNNCC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	288, 351, 366
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 345, 357
BseAI	TCCGGA	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	288, 351, 366
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	209, 345, 357
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	209, 266
BshFI	GGCC	3 cut(s)	218, 287, 350
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	39, 339
BslI	CCNNNNNNNGG	3 cut(s)	209, 345, 357
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	218, 287, 350
Bsp1286I	GDGCHC	2 cut(s)	65, 318
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	360
Bsp19I	CCATGG	2 cut(s)	288, 366
BspACI	CCGC	5 cut(s)	19, 42, 149, 167, 328
BspANI	GGCC	3 cut(s)	218, 287, 350
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	362
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	355, 368
BssECI	CCNNGG	3 cut(s)	288, 351, 366
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	3 cut(s)	288, 351, 366
Bst4CI	ACNGT	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	120, 132
BstDSI	CCRYGG	2 cut(s)	288, 366
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 60, 155, 164, 215
BstNSI	RCATGY	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	218, 287, 350
BtgI	CCRYGG	2 cut(s)	288, 366
BtsCI	GGATG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	21, 216, 348
CpoI	CGGWCCG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	4
CspI	CGGWCCG	1 cut(s)	21
CviAII	CATG	4 cut(s)	178, 289, 367, 388
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	120, 132
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	3 cut(s)	34, 164, 317
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	3 cut(s)	288, 351, 366
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	98, 363
EcoICRI	GAGCTC	1 cut(s)	63
EcoT14I	CCWWGG	3 cut(s)	288, 351, 366
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	288, 351, 366
FaeI	CATG	4 cut(s)	181, 292, 370, 391
FaiI	YATR	5 cut(s)	179, 290, 368, 375, 389
FatI	CATG	4 cut(s)	177, 288, 366, 387
Fnu4HI	GCNGC	3 cut(s)	43, 156, 168
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	43, 156, 168
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	3 cut(s)	43, 156, 168
GsaI	CCCAGC	2 cut(s)	213, 270
HaeIII	GGCC	3 cut(s)	218, 287, 350
HapII	CCGG	2 cut(s)	39, 339
Hin1II	CATG	4 cut(s)	181, 292, 370, 391
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	39, 339
HphI	GGTGA	2 cut(s)	202, 241
Hpy188I	TCNGA	2 cut(s)	85, 204
Hpy188III	TCNNGA	3 cut(s)	99, 280, 339
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	86, 226, 244, 350
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 60, 155, 164, 215
HpyF3I	CTNAG	2 cut(s)	120, 132
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	181, 292, 370, 391
Kpn2I	TCCGGA	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	9 cut(s)	40, 52, 84, 158, 195, 252, 297, 352, 366
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	104, 383
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	2 cut(s)	65, 318
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	21, 79, 82, 127, 145, 181
Mox20I	TGGCCA	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	2 cut(s)	39, 339
MwoI	GCNNNNNNNGC	5 cut(s)	51, 60, 155, 164, 215
NcoI	CCATGG	2 cut(s)	288, 366
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	4 cut(s)	181, 292, 370, 391
NlaIV	GGNNCC	1 cut(s)	362
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	44, 157, 169
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	65
PspFI	CCCAGC	2 cut(s)	209, 266
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	3 cut(s)	21, 216, 348
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
Rsr2I	CGGWCCG	1 cut(s)	21
RsrII	CGGWCCG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	43, 156, 168
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	3 cut(s)	21, 216, 348
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	65, 318
SetI	ASST	9 cut(s)	9, 59, 65, 97, 126, 192, 211, 255, 385
SinI	GGWCC	1 cut(s)	21
SsiI	CCGC	5 cut(s)	19, 42, 149, 167, 328
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	65
StyI	CCWWGG	3 cut(s)	288, 351, 366
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	45, 170
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	21
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.