Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

64939590 .. 64941986

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACAACAACGGCGGCGTTTGGGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGACCCGAGGTTCTGTGCTGACTCGATATTCCCGCTGCTTAACTACCAGGCTGAGCCGCCGGCCCAGACGCTCTCCGTCACCGTCCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGAGGAACTTCCCGGAGGCACTTGCTTACCACCGGCTGGAGCAAGTTCGTCAACCACAAGATGCTAGTCGCCGGCAACTCTGTGGTGTTCATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTGAGGCGGACTGTGAGGGCGAGCGCCGGCGGCGATTGCGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGTGAAGGCATTGAAGGAGTTTTGGACAGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTCGTTCCGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATGACCGGAGCAGCTAATTCAACAATGGTCAATTCAATTCTTCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

242

Amino Acids

26.57

Weight (kDa)

9.3

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 106	5.7e-18	B3 DNA binding domain
ARF_AD	PF06507	121 - 151	6.5e-06	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	9 cut(s)	14, 48, 92, 116, 153, 169, 313, 336, 475
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	299, 582
AfiI	CCNNNNNNNGG	4 cut(s)	216, 288, 492, 683
AgsI	TTSAA	3 cut(s)	397, 699, 714
AjnI	CCWGG	2 cut(s)	105, 637
AluBI	AGCT	4 cut(s)	279, 413, 626, 692
AluI	AGCT	4 cut(s)	279, 413, 626, 692
Alw21I	GWGCWC	2 cut(s)	281, 628
Alw26I	GTCTC	2 cut(s)	434, 610
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	120, 354, 432
ApeKI	GCWGC	3 cut(s)	94, 643, 689
ApoI	RAATTY	1 cut(s)	665
AspLEI	GCGC	2 cut(s)	332, 347
AspS9I	GGNCC	2 cut(s)	121, 354
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	5 cut(s)	130, 319, 379, 397, 541
AvaI	CYCGRG	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	3 cut(s)	281, 536, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	2 cut(s)	281, 628
BbvI	GCAGC	3 cut(s)	81, 630, 701
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	2 cut(s)	27, 166
BciT130I	CCWGG	2 cut(s)	107, 639
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	434, 610
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	7 cut(s)	15, 95, 116, 154, 337, 644, 690
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	7 cut(s)	16, 96, 117, 155, 338, 645, 691
Bme1390I	CCNGG	3 cut(s)	107, 193, 639
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	121, 354
BmrFI	CCNGG	3 cut(s)	107, 193, 639
BmsI	GCATC	3 cut(s)	25, 231, 566
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	2 cut(s)	238, 265
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	5 cut(s)	65, 181, 435, 536, 638
BsaWI	WCCGGW	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 288, 492, 683
Bse118I	RCCGGY	4 cut(s)	118, 212, 251, 332
BseBI	CCWGG	2 cut(s)	107, 639
BseDI	CCNNGG	5 cut(s)	65, 181, 435, 536, 638
BseGI	GGATG	2 cut(s)	423, 502
BseLI	CCNNNNNNNGG	4 cut(s)	216, 288, 492, 683
BseMII	CTCAG	3 cut(s)	102, 634, 638
BseRI	GAGGAG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	81, 630, 701
BseYI	CCCAGC	2 cut(s)	347, 413
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	122, 356, 434
BsiHKAI	GWGCWC	2 cut(s)	281, 628
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	6 cut(s)	119, 193, 213, 252, 333, 684
BslFI	GGGAC	2 cut(s)	37, 176
BslI	CCNNNNNNNGG	4 cut(s)	216, 288, 492, 683
BsmAI	GTCTC	2 cut(s)	434, 610
BsmFI	GGGAC	2 cut(s)	37, 176
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	122, 356, 434
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	281, 465, 536, 628
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	2 cut(s)	435, 536
BspACI	CCGC	9 cut(s)	14, 48, 92, 116, 153, 169, 313, 336, 475
BspANI	GGCC	3 cut(s)	122, 356, 434
BspCNI	CTCAG	3 cut(s)	103, 633, 639
BspHI	TCATGA	2 cut(s)	270, 669
BspMAI	CTGCAG	1 cut(s)	516
BsrFI	RCCGGY	4 cut(s)	118, 212, 251, 332
BssAI	RCCGGY	4 cut(s)	118, 212, 251, 332
BssECI	CCNNGG	5 cut(s)	65, 181, 435, 536, 638
BssT1I	CCWWGG	2 cut(s)	435, 536
Bst2UI	CCWGG	2 cut(s)	107, 639
Bst4CI	ACNGT	4 cut(s)	142, 319, 580, 598
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	120, 253, 328, 334
BstDEI	CTNAG	4 cut(s)	111, 522, 620, 647
BstDSI	CCRYGG	2 cut(s)	435, 536
BstF5I	GGATG	2 cut(s)	423, 502
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 347
BstMAI	GTCTC	2 cut(s)	434, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 342, 353
BstNI	CCWGG	2 cut(s)	107, 639
BstSCI	CCNGG	3 cut(s)	105, 191, 637
BstSFI	CTRYAG	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	81, 630, 701
BstV2I	GAAGAC	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	122, 356, 434
BtgI	CCRYGG	2 cut(s)	435, 536
BtsCI	GGATG	2 cut(s)	423, 502
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	4 cut(s)	120, 253, 328, 334
CciI	TCATGA	2 cut(s)	270, 669
CfoI	GCGC	2 cut(s)	332, 347
Cfr10I	RCCGGY	4 cut(s)	118, 212, 251, 332
Cfr13I	GGNCC	2 cut(s)	121, 354
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	298, 581
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	5 cut(s)	271, 436, 492, 537, 670
CviQI	GTAC	2 cut(s)	298, 581
DdeI	CTNAG	4 cut(s)	111, 522, 620, 647
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	3 cut(s)	158, 328, 464
Ecl136II	GAGCTC	2 cut(s)	279, 626
Eco130I	CCWWGG	2 cut(s)	435, 536
Eco24I	GRGCYC	3 cut(s)	281, 536, 628
Eco53kI	GAGCTC	2 cut(s)	279, 626
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	2 cut(s)	279, 626
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	105, 637
EcoT14I	CCWWGG	2 cut(s)	435, 536
EcoT38I	GRGCYC	3 cut(s)	281, 536, 628
ErhI	CCWWGG	2 cut(s)	435, 536
FaeI	CATG	5 cut(s)	274, 439, 495, 540, 673
FaiI	YATR	9 cut(s)	272, 437, 493, 538, 576, 594, 601, 671, 680
FaqI	GGGAC	2 cut(s)	37, 176
FatI	CATG	5 cut(s)	270, 435, 491, 536, 669
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	15, 95, 116, 154, 337, 644, 690
FokI	GGATG	2 cut(s)	430, 509
FriOI	GRGCYC	3 cut(s)	281, 536, 628
Fsp4HI	GCNGC	7 cut(s)	15, 95, 116, 154, 337, 644, 690
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	331, 346
GluI	GCNGC	7 cut(s)	15, 95, 116, 154, 337, 644, 690
GsaI	CCCAGC	2 cut(s)	351, 417
GsuI	CTGGAG	2 cut(s)	238, 265
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	122, 356, 434
HapII	CCGG	6 cut(s)	119, 193, 213, 252, 333, 684
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	332, 347
Hin1II	CATG	5 cut(s)	274, 439, 495, 540, 673
Hin6I	GCGC	2 cut(s)	330, 345
HinP1I	GCGC	2 cut(s)	330, 345
HincII	GTYRAC	2 cut(s)	232, 547
HindII	GTYRAC	2 cut(s)	232, 547
HinfI	GANTC	5 cut(s)	25, 80, 423, 618, 634
HpaII	CCGG	6 cut(s)	119, 193, 213, 252, 333, 684
HphI	GGTGA	5 cut(s)	130, 319, 379, 397, 541
Hpy166II	GTNNAC	2 cut(s)	232, 547
Hpy188I	TCNGA	3 cut(s)	34, 61, 623
Hpy188III	TCNNGA	4 cut(s)	271, 282, 427, 670
Hpy8I	GTNNAC	2 cut(s)	232, 547
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	7 cut(s)	39, 364, 382, 391, 488, 576, 594
HpyCH4III	ACNGT	4 cut(s)	142, 319, 580, 598
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	148, 514, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 342, 353
HpyF3I	CTNAG	4 cut(s)	111, 522, 620, 647
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	274, 439, 495, 540, 673
HspAI	GCGC	2 cut(s)	330, 345
KroI	GCCGGC	3 cut(s)	118, 251, 332
KroNI	GCCGGC	3 cut(s)	120, 253, 334
LmnI	GCTCC	5 cut(s)	219, 276, 284, 631, 686
Lsp1109I	GCAGC	3 cut(s)	81, 630, 701
LweI	GCATC	3 cut(s)	25, 231, 566
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	136, 487
MboII	GAAGA	4 cut(s)	463, 563, 674, 710
MhlI	GDGCHC	4 cut(s)	281, 465, 536, 628
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	4 cut(s)	665, 694, 709, 714
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	4 cut(s)	19, 74, 432, 612
Mox20I	TGGCCA	1 cut(s)	434
MreI	CGCCGGCG	1 cut(s)	332
MroNI	GCCGGC	3 cut(s)	118, 251, 332
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	94, 413
MspI	CCGG	6 cut(s)	119, 193, 213, 252, 333, 684
MspR9I	CCNGG	3 cut(s)	107, 193, 639
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	2 cut(s)	107, 639
MwoI	GCNNNNNNNGC	3 cut(s)	336, 342, 353
NaeI	GCCGGC	3 cut(s)	120, 253, 334
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	435, 536
NgoMIV	GCCGGC	3 cut(s)	118, 251, 332
NlaIII	CATG	5 cut(s)	274, 439, 495, 540, 673
NmuCI	GTSAC	1 cut(s)	136
PagI	TCATGA	2 cut(s)	270, 669
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	3 cut(s)	120, 253, 334
PfeI	GAWTC	1 cut(s)	634
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	7 cut(s)	16, 96, 117, 155, 338, 645, 691
PleI	GAGTC	4 cut(s)	19, 74, 431, 612
PpsI	GAGTC	4 cut(s)	19, 74, 431, 612
Psp124BI	GAGCTC	2 cut(s)	281, 628
Psp6I	CCWGG	2 cut(s)	105, 637
PspFI	CCCAGC	2 cut(s)	347, 413
PspGI	CCWGG	2 cut(s)	105, 637
PspPI	GGNCC	2 cut(s)	121, 354
PstI	CTGCAG	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	299, 582
RsaNI	GTAC	2 cut(s)	298, 581
SacI	GAGCTC	2 cut(s)	281, 628
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	7 cut(s)	15, 95, 116, 154, 337, 644, 690
Sau96I	GGNCC	2 cut(s)	121, 354
SchI	GAGTC	4 cut(s)	19, 74, 432, 612
ScrFI	CCNGG	3 cut(s)	107, 193, 639
SduI	GDGCHC	4 cut(s)	281, 465, 536, 628
SfaNI	GCATC	3 cut(s)	25, 231, 566
SfcI	CTRYAG	1 cut(s)	512
SgrAI	CRCCGGYG	1 cut(s)	332
Sse9I	AATT	4 cut(s)	665, 694, 709, 714
SsiI	CCGC	9 cut(s)	14, 48, 92, 116, 153, 169, 313, 336, 475
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	2 cut(s)	281, 628
StyD4I	CCNGG	3 cut(s)	105, 191, 637
StyI	CCWWGG	2 cut(s)	435, 536
TaaI	ACNGT	4 cut(s)	142, 319, 580, 598
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	665, 694, 709, 714
TauI	GCSGC	4 cut(s)	17, 118, 156, 339
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	94, 643, 689
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	259, 513, 563, 581, 658
TspGWI	ACGGA	2 cut(s)	124, 475
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	665
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.