Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 215 |
| AclWI | GGATC | 1 cut(s) | 465 |
| AcsI | RAATTY | 1 cut(s) | 145 |
| AfaI | GTAC | 2 cut(s) | 425, 520 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 14 |
| AgsI | TTSAA | 9 cut(s) | 30, 46, 61, 226, 350, 371, 377, 482, 512 |
| AjnI | CCWGG | 1 cut(s) | 95 |
| AluBI | AGCT | 2 cut(s) | 23, 515 |
| AluI | AGCT | 2 cut(s) | 23, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 164 |
| Alw26I | GTCTC | 1 cut(s) | 505 |
| Alw44I | GTGCAC | 1 cut(s) | 160 |
| AlwI | GGATC | 1 cut(s) | 465 |
| ApaLI | GTGCAC | 1 cut(s) | 160 |
| ApoI | RAATTY | 1 cut(s) | 145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 340 |
| AsuHPI | GGTGA | 1 cut(s) | 249 |
| BaeGI | GKGCMC | 1 cut(s) | 164 |
| Bbv12I | GWGCWC | 1 cut(s) | 164 |
| BccI | CCATC | 1 cut(s) | 296 |
| BceAI | ACGGC | 1 cut(s) | 331 |
| BciT130I | CCWGG | 1 cut(s) | 97 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BcoDI | GTCTC | 1 cut(s) | 505 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 1 cut(s) | 97 |
| BmiI | GGNNCC | 2 cut(s) | 94, 308 |
| BmrFI | CCNGG | 1 cut(s) | 97 |
| BmrI | ACTGGG | 1 cut(s) | 411 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BmuI | ACTGGG | 1 cut(s) | 411 |
| BoxI | GACNNNNGTC | 1 cut(s) | 329 |
| BpmI | CTGGAG | 1 cut(s) | 36 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 14 |
| Bse1I | ACTGG | 3 cut(s) | 19, 406, 459 |
| BseBI | CCWGG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 167 |
| BseNI | ACTGG | 3 cut(s) | 19, 406, 459 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseSI | GKGCMC | 1 cut(s) | 164 |
| BsiHKAI | GWGCWC | 1 cut(s) | 164 |
| BslFI | GGGAC | 1 cut(s) | 419 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BsmAI | GTCTC | 1 cut(s) | 505 |
| BsmFI | GGGAC | 1 cut(s) | 419 |
| Bsp1286I | GDGCHC | 1 cut(s) | 164 |
| Bsp143I | GATC | 3 cut(s) | 103, 247, 457 |
| BspCNI | CTCAG | 1 cut(s) | 166 |
| BspLI | GGNNCC | 2 cut(s) | 94, 308 |
| BspPI | GGATC | 1 cut(s) | 465 |
| BsrI | ACTGG | 3 cut(s) | 19, 406, 459 |
| BssMI | GATC | 3 cut(s) | 103, 247, 457 |
| Bst2UI | CCWGG | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 3 cut(s) | 243, 410, 508 |
| BstC8I | GCNNGC | 2 cut(s) | 82, 86 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstKTI | GATC | 3 cut(s) | 106, 250, 460 |
| BstMAI | GTCTC | 1 cut(s) | 505 |
| BstMBI | GATC | 3 cut(s) | 103, 247, 457 |
| BstNI | CCWGG | 1 cut(s) | 97 |
| BstNSI | RCATGY | 1 cut(s) | 88 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 329 |
| BstSCI | CCNGG | 1 cut(s) | 95 |
| BstSLI | GKGCMC | 1 cut(s) | 164 |
| BstX2I | RGATCY | 2 cut(s) | 103, 457 |
| BstYI | RGATCY | 2 cut(s) | 103, 457 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 1 cut(s) | 399 |
| Cac8I | GCNNGC | 2 cut(s) | 82, 86 |
| Csp6I | GTAC | 2 cut(s) | 424, 519 |
| CviAII | CATG | 3 cut(s) | 85, 190, 292 |
| CviJI | RGCY | 4 cut(s) | 23, 95, 267, 515 |
| CviKI_1 | RGCY | 4 cut(s) | 23, 95, 267, 515 |
| CviQI | GTAC | 2 cut(s) | 424, 519 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 3 cut(s) | 105, 249, 459 |
| DpnII | GATC | 3 cut(s) | 103, 247, 457 |
| EcoRII | CCWGG | 1 cut(s) | 95 |
| FaeI | CATG | 3 cut(s) | 88, 193, 295 |
| FaiI | YATR | 8 cut(s) | 11, 66, 86, 168, 191, 293, 419, 468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 328, 360 |
| FaqI | GGGAC | 1 cut(s) | 419 |
| FatI | CATG | 3 cut(s) | 84, 189, 291 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| FblI | GTMKAC | 1 cut(s) | 215 |
| GsuI | CTGGAG | 1 cut(s) | 36 |
| Hin1II | CATG | 3 cut(s) | 88, 193, 295 |
| HindIII | AAGCTT | 1 cut(s) | 513 |
| HinfI | GANTC | 1 cut(s) | 498 |
| HphI | GGTGA | 1 cut(s) | 249 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 216, 239, 278 |
| Hpy188I | TCNGA | 5 cut(s) | 156, 247, 335, 363, 444 |
| Hpy188III | TCNNGA | 1 cut(s) | 198 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 216, 239, 278 |
| HpyAV | CCTTC | 1 cut(s) | 371 |
| HpyCH4III | ACNGT | 3 cut(s) | 243, 410, 508 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 162, 399 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| Hsp92II | CATG | 3 cut(s) | 88, 193, 295 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 3 cut(s) | 103, 247, 457 |
| LmnI | GCTCC | 1 cut(s) | 92 |
| LpnPI | CCDG | 9 cut(s) | 66, 74, 82, 90, 109, 273, 281, 387, 440 |
| LweI | GCATC | 1 cut(s) | 376 |
| MalI | GATC | 3 cut(s) | 105, 249, 459 |
| MboI | GATC | 3 cut(s) | 103, 247, 457 |
| MboII | GAAGA | 2 cut(s) | 42, 348 |
| MflI | RGATCY | 2 cut(s) | 103, 457 |
| MhlI | GDGCHC | 1 cut(s) | 164 |
| MluCI | AATT | 6 cut(s) | 25, 41, 46, 145, 169, 251 |
| MlyI | GAGTC | 1 cut(s) | 507 |
| MmeI | TCCRAC | 1 cut(s) | 313 |
| MnlI | CCTC | 2 cut(s) | 162, 201 |
| MroXI | GAANNNNTTC | 1 cut(s) | 340 |
| MseI | TTAA | 1 cut(s) | 137 |
| MspR9I | CCNGG | 1 cut(s) | 97 |
| MvaI | CCWGG | 1 cut(s) | 97 |
| NdeII | GATC | 3 cut(s) | 103, 247, 457 |
| NlaIII | CATG | 3 cut(s) | 88, 193, 295 |
| NlaIV | GGNNCC | 2 cut(s) | 94, 308 |
| NspI | RCATGY | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 1 cut(s) | 340 |
| PleI | GAGTC | 1 cut(s) | 506 |
| PpsI | GAGTC | 1 cut(s) | 506 |
| PshAI | GACNNNNGTC | 1 cut(s) | 329 |
| Psp6I | CCWGG | 1 cut(s) | 95 |
| PspGI | CCWGG | 1 cut(s) | 95 |
| PspN4I | GGNNCC | 2 cut(s) | 94, 308 |
| PsuI | RGATCY | 2 cut(s) | 103, 457 |
| RsaI | GTAC | 2 cut(s) | 425, 520 |
| RsaNI | GTAC | 2 cut(s) | 424, 519 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| Sau3AI | GATC | 3 cut(s) | 103, 247, 457 |
| SchI | GAGTC | 1 cut(s) | 507 |
| ScrFI | CCNGG | 1 cut(s) | 97 |
| SduI | GDGCHC | 1 cut(s) | 164 |
| SetI | ASST | 5 cut(s) | 10, 25, 167, 382, 517 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SphI | GCATGC | 1 cut(s) | 88 |
| Sse9I | AATT | 6 cut(s) | 25, 41, 46, 145, 169, 251 |
| StyD4I | CCNGG | 1 cut(s) | 95 |
| TaaI | ACNGT | 3 cut(s) | 243, 410, 508 |
| TaqI | TCGA | 2 cut(s) | 323, 496 |
| TasI | AATT | 6 cut(s) | 25, 41, 46, 145, 169, 251 |
| TatI | WGTACW | 1 cut(s) | 518 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TscAI | CASTG | 1 cut(s) | 406 |
| TspDTI | ATGAA | 2 cut(s) | 42, 156 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| TspRI | CASTG | 1 cut(s) | 406 |
| VneI | GTGCAC | 1 cut(s) | 160 |
| XapI | RAATTY | 1 cut(s) | 145 |
| XceI | RCATGY | 1 cut(s) | 88 |
| XmiI | GTMKAC | 1 cut(s) | 215 |
| XmnI | GAANNNNTTC | 1 cut(s) | 340 |