Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

69198221 .. 69198583

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG491700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTCATCGCCGGCGACTCCGTCGTGTTTATAAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGATCGTGAGGGCGAACGCCAGCTGCGATTGTGGTAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAAGTGACGGCTTTAAGACGAAGCTTTTGGCGGCGGCTGTTGCAGAGGCTGCAGAGATGGAGGCGCAGGACATGCCGTTTGAGGTGGTGTATATATTATCCAAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAAGTGGTGGAGAAGGCATTGAAGGTGTATTGGACGGCTGGGATGACAGTCAAGATGGCCATGGAGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

120

Amino Acids

12.79

Weight (kDa)

4.76

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	261
AciI	CCGC	3 cut(s)	73, 185, 188
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	48, 261
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	5 cut(s)	39, 96, 117, 178, 261
AluI	AGCT	5 cut(s)	39, 96, 117, 178, 261
Alw21I	GWGCWC	2 cut(s)	41, 119
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	268, 346
ApeKI	GCWGC	2 cut(s)	96, 203
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 215, 247
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	41, 119
Bbv12I	GWGCWC	2 cut(s)	41, 119
BbvI	GCAGC	2 cut(s)	83, 190
BccI	CCATC	2 cut(s)	205, 338
BceAI	ACGGC	3 cut(s)	178, 214, 340
BcoDI	GTCTC	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	4 cut(s)	97, 186, 189, 204
BlsI	GCNGC	4 cut(s)	98, 187, 190, 205
BmgT120I	GGNCC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 261
Bse118I	RCCGGY	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	48, 261
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	83, 190
BseYI	CCCAGC	2 cut(s)	261, 327
BshFI	GGCC	2 cut(s)	270, 348
BsiHKAI	GWGCWC	2 cut(s)	41, 119
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	48, 261
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	270, 348
Bsp1286I	GDGCHC	2 cut(s)	41, 119
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	73, 185, 188
BspANI	GGCC	2 cut(s)	270, 348
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	338
BstAPI	GCANNNNNTGC	2 cut(s)	203, 226
BstC8I	GCNNGC	2 cut(s)	13, 94
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 203, 226, 267
BstNSI	RCATGY	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	83, 190
BsuRI	GGCC	2 cut(s)	270, 348
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	13, 94
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	226, 350
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	2 cut(s)	39, 117
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	41, 119
Eco53kI	GAGCTC	2 cut(s)	39, 117
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	2 cut(s)	39, 117
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	41, 119
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	2 cut(s)	229, 353
FaiI	YATR	5 cut(s)	32, 227, 246, 248, 351
FatI	CATG	2 cut(s)	225, 349
Fnu4HI	GCNGC	4 cut(s)	97, 186, 189, 204
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	2 cut(s)	41, 119
Fsp4HI	GCNGC	4 cut(s)	97, 186, 189, 204
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	97, 186, 189, 204
GsaI	CCCAGC	2 cut(s)	265, 331
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	270, 348
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	229, 353
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	4 cut(s)	42, 79, 153, 341
Hpy99I	CGWCG	2 cut(s)	26, 65
HpyAV	CCTTC	4 cut(s)	140, 278, 296, 305
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	197, 206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 203, 226, 267
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	229, 353
HspAI	GCGC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	36, 44, 114
LpnPI	CCDG	7 cut(s)	25, 55, 106, 138, 206, 247, 313
Lsp1109I	GCAGC	2 cut(s)	83, 190
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	41, 119
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	7 cut(s)	38, 75, 133, 136, 193, 208, 229
Mox20I	TGGCCA	1 cut(s)	348
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	194, 203, 226, 267
NaeI	GCCGGC	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	229, 353
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	4 cut(s)	98, 187, 190, 205
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	2 cut(s)	41, 119
PspFI	CCCAGC	2 cut(s)	261, 327
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SacI	GAGCTC	2 cut(s)	41, 119
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	4 cut(s)	97, 186, 189, 204
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	41, 119
SfcI	CTRYAG	1 cut(s)	204
SgrAI	CRCCGGYG	1 cut(s)	11
SsiI	CCGC	3 cut(s)	73, 185, 188
SstI	GAGCTC	2 cut(s)	41, 119
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	63
TauI	GCSGC	2 cut(s)	188, 191
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	96, 203
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	10
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	261
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.