Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 193 |
| AccI | GTMKAC | 1 cut(s) | 215 |
| AcsI | RAATTY | 1 cut(s) | 145 |
| AcuI | CTGAAG | 1 cut(s) | 224 |
| AgsI | TTSAA | 3 cut(s) | 46, 61, 226 |
| AjnI | CCWGG | 1 cut(s) | 95 |
| AluBI | AGCT | 1 cut(s) | 23 |
| AluI | AGCT | 1 cut(s) | 23 |
| Alw21I | GWGCWC | 1 cut(s) | 164 |
| Alw44I | GTGCAC | 1 cut(s) | 160 |
| ApaLI | GTGCAC | 1 cut(s) | 160 |
| ApeKI | GCWGC | 2 cut(s) | 20, 80 |
| ApoI | RAATTY | 1 cut(s) | 145 |
| AsuHPI | GGTGA | 2 cut(s) | 21, 249 |
| BaeGI | GKGCMC | 1 cut(s) | 164 |
| BanI | GGYRCC | 1 cut(s) | 193 |
| Bbv12I | GWGCWC | 1 cut(s) | 164 |
| BbvI | GCAGC | 2 cut(s) | 32, 67 |
| BceAI | ACGGC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 1 cut(s) | 97 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BglII | AGATCT | 1 cut(s) | 103 |
| BisI | GCNGC | 2 cut(s) | 21, 81 |
| BlsI | GCNGC | 2 cut(s) | 22, 82 |
| Bme1390I | CCNGG | 1 cut(s) | 97 |
| BmiI | GGNNCC | 1 cut(s) | 195 |
| BmrFI | CCNGG | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 2 cut(s) | 152, 197 |
| BseBI | CCWGG | 1 cut(s) | 97 |
| BseDI | CCNNGG | 2 cut(s) | 152, 197 |
| BseGI | GGATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 1 cut(s) | 210 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseSI | GKGCMC | 1 cut(s) | 164 |
| BseXI | GCAGC | 2 cut(s) | 32, 67 |
| BsgI | GTGCAG | 1 cut(s) | 107 |
| BshNI | GGYRCC | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 1 cut(s) | 164 |
| Bsp1286I | GDGCHC | 1 cut(s) | 164 |
| Bsp143I | GATC | 2 cut(s) | 103, 247 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 193 |
| BssECI | CCNNGG | 2 cut(s) | 152, 197 |
| BssMI | GATC | 2 cut(s) | 103, 247 |
| BssT1I | CCWWGG | 1 cut(s) | 197 |
| Bst2UI | CCWGG | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 1 cut(s) | 243 |
| Bst6I | CTCTTC | 1 cut(s) | 200 |
| BstDEI | CTNAG | 1 cut(s) | 219 |
| BstF5I | GGATG | 1 cut(s) | 162 |
| BstKTI | GATC | 2 cut(s) | 106, 250 |
| BstMBI | GATC | 2 cut(s) | 103, 247 |
| BstNI | CCWGG | 1 cut(s) | 97 |
| BstSCI | CCNGG | 1 cut(s) | 95 |
| BstSLI | GKGCMC | 1 cut(s) | 164 |
| BstV1I | GCAGC | 2 cut(s) | 32, 67 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BtsCI | GGATG | 1 cut(s) | 162 |
| CviAII | CATG | 2 cut(s) | 190, 292 |
| CviJI | RGCY | 4 cut(s) | 23, 95, 202, 267 |
| CviKI_1 | RGCY | 4 cut(s) | 23, 95, 202, 267 |
| DdeI | CTNAG | 1 cut(s) | 219 |
| DpnI | GATC | 2 cut(s) | 105, 249 |
| DpnII | GATC | 2 cut(s) | 103, 247 |
| Eam1104I | CTCTTC | 1 cut(s) | 200 |
| EarI | CTCTTC | 1 cut(s) | 200 |
| Eco130I | CCWWGG | 1 cut(s) | 197 |
| Eco57I | CTGAAG | 1 cut(s) | 224 |
| EcoRII | CCWGG | 1 cut(s) | 95 |
| EcoT14I | CCWWGG | 1 cut(s) | 197 |
| ErhI | CCWWGG | 1 cut(s) | 197 |
| FaeI | CATG | 2 cut(s) | 193, 295 |
| FaiI | YATR | 5 cut(s) | 11, 66, 168, 191, 293 |
| FatI | CATG | 2 cut(s) | 189, 291 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| FblI | GTMKAC | 1 cut(s) | 215 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 81 |
| FokI | GGATG | 1 cut(s) | 169 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 81 |
| GluI | GCNGC | 2 cut(s) | 21, 81 |
| Hin1II | CATG | 2 cut(s) | 193, 295 |
| HphI | GGTGA | 2 cut(s) | 21, 249 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 216, 239, 278 |
| Hpy188I | TCNGA | 2 cut(s) | 156, 247 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 216, 239, 278 |
| HpyCH4III | ACNGT | 1 cut(s) | 243 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 162 |
| HpyF3I | CTNAG | 1 cut(s) | 219 |
| Hsp92II | CATG | 2 cut(s) | 193, 295 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 2 cut(s) | 103, 247 |
| LpnPI | CCDG | 6 cut(s) | 28, 74, 82, 90, 109, 273 |
| Lsp1109I | GCAGC | 2 cut(s) | 32, 67 |
| MalI | GATC | 2 cut(s) | 105, 249 |
| MboI | GATC | 2 cut(s) | 103, 247 |
| MboII | GAAGA | 1 cut(s) | 217 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MhlI | GDGCHC | 1 cut(s) | 164 |
| MluCI | AATT | 5 cut(s) | 25, 41, 145, 169, 251 |
| MnlI | CCTC | 2 cut(s) | 162, 201 |
| MseI | TTAA | 1 cut(s) | 137 |
| MspR9I | CCNGG | 1 cut(s) | 97 |
| MvaI | CCWGG | 1 cut(s) | 97 |
| NdeII | GATC | 2 cut(s) | 103, 247 |
| NlaIII | CATG | 2 cut(s) | 193, 295 |
| NlaIV | GGNNCC | 1 cut(s) | 195 |
| PkrI | GCNGC | 2 cut(s) | 22, 82 |
| Psp6I | CCWGG | 1 cut(s) | 95 |
| PspGI | CCWGG | 1 cut(s) | 95 |
| PspN4I | GGNNCC | 1 cut(s) | 195 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| SatI | GCNGC | 2 cut(s) | 21, 81 |
| Sau3AI | GATC | 2 cut(s) | 103, 247 |
| ScrFI | CCNGG | 1 cut(s) | 97 |
| SduI | GDGCHC | 1 cut(s) | 164 |
| SetI | ASST | 3 cut(s) | 10, 25, 167 |
| Sse9I | AATT | 5 cut(s) | 25, 41, 145, 169, 251 |
| StyD4I | CCNGG | 1 cut(s) | 95 |
| StyI | CCWWGG | 1 cut(s) | 197 |
| TaaI | ACNGT | 1 cut(s) | 243 |
| TasI | AATT | 5 cut(s) | 25, 41, 145, 169, 251 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TseI | GCWGC | 2 cut(s) | 20, 80 |
| VneI | GTGCAC | 1 cut(s) | 160 |
| XapI | RAATTY | 1 cut(s) | 145 |
| XmiI | GTMKAC | 1 cut(s) | 215 |