Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

67979047 .. 67980854

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG475700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGTGTCAAGATGGCATGGAGTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGCTCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCGGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATCCCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATTCTTCCTTGTCGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATAAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGTCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGGTAGTCCACAGTCTGATCAATTATCACCAGGTAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACGGCAACTCGACATTTGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTCAAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATGCCAAACTGCTTGAAAGGATTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

258

Amino Acids

28.36

Weight (kDa)

6.9

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	5 - 55	6.5e-14	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	4 cut(s)	69, 82, 277, 744
AcsI	RAATTY	2 cut(s)	275, 424
AcuI	CTGAAG	3 cut(s)	24, 77, 135
AfaI	GTAC	2 cut(s)	192, 704
AfiI	CCNNNNNNNGG	2 cut(s)	59, 293
AgsI	TTSAA	7 cut(s)	266, 309, 325, 505, 629, 650, 761
AjnI	CCWGG	3 cut(s)	247, 374, 538
AluBI	AGCT	2 cut(s)	236, 302
AluI	AGCT	2 cut(s)	236, 302
Alw21I	GWGCWC	2 cut(s)	238, 443
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	439
AlwI	GGATC	4 cut(s)	69, 82, 277, 744
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	2 cut(s)	275, 424
Asp700I	GAANNNNTTC	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	151, 528
BaeGI	GKGCMC	2 cut(s)	32, 443
BamHI	GGATCC	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	146, 238
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	238, 443
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	2 cut(s)	7, 575
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	3 cut(s)	249, 376, 540
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	406
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	3 cut(s)	249, 376, 540
BmiI	GGNNCC	3 cut(s)	76, 373, 587
BmrFI	CCNGG	3 cut(s)	249, 376, 540
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	176, 655
BmuI	ACTGGG	1 cut(s)	690
BoxI	GACNNNNGTC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	80, 146, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 293
Bse1I	ACTGG	3 cut(s)	298, 685, 738
BseBI	CCWGG	3 cut(s)	249, 376, 540
BseDI	CCNNGG	3 cut(s)	80, 146, 431
BseGI	GGATG	2 cut(s)	112, 441
BseLI	CCNNNNNNNGG	2 cut(s)	59, 293
BseMII	CTCAG	4 cut(s)	45, 244, 248, 489
BseNI	ACTGG	3 cut(s)	298, 685, 738
BseRI	GAGGAG	1 cut(s)	420
BseSI	GKGCMC	2 cut(s)	32, 443
BseXI	GCAGC	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	238, 443
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	2 cut(s)	59, 293
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	133
Bsp1286I	GDGCHC	4 cut(s)	32, 146, 238, 443
Bsp143I	GATC	5 cut(s)	74, 282, 382, 526, 736
Bsp19I	CCATGG	2 cut(s)	80, 146
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	4 cut(s)	46, 243, 249, 490
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	76, 373, 587
BspPI	GGATC	4 cut(s)	69, 82, 277, 744
BsrI	ACTGG	3 cut(s)	298, 685, 738
BssECI	CCNNGG	3 cut(s)	80, 146, 431
BssMI	GATC	5 cut(s)	74, 282, 382, 526, 736
BssT1I	CCWWGG	2 cut(s)	80, 146
Bst2UI	CCWGG	3 cut(s)	249, 376, 540
Bst4CI	ACNGT	4 cut(s)	190, 208, 522, 689
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	361, 365
BstDEI	CTNAG	5 cut(s)	54, 132, 230, 257, 498
BstDSI	CCRYGG	2 cut(s)	80, 146
BstF5I	GGATG	2 cut(s)	112, 441
BstKTI	GATC	5 cut(s)	77, 285, 385, 529, 739
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	5 cut(s)	74, 282, 382, 526, 736
BstNI	CCWGG	3 cut(s)	249, 376, 540
BstNSI	RCATGY	1 cut(s)	367
BstPAI	GACNNNNGTC	1 cut(s)	608
BstSCI	CCNGG	3 cut(s)	247, 374, 538
BstSLI	GKGCMC	2 cut(s)	32, 443
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	3 cut(s)	74, 382, 736
BstYI	RGATCY	3 cut(s)	74, 382, 736
BsuI	GTATCC	1 cut(s)	406
BtgI	CCRYGG	2 cut(s)	80, 146
BtsCI	GGATG	2 cut(s)	112, 441
BtsIMutI	CAGTG	2 cut(s)	239, 678
Cac8I	GCNNGC	2 cut(s)	361, 365
CciI	TCATGA	1 cut(s)	279
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	191, 703
CviAII	CATG	8 cut(s)	18, 81, 102, 147, 280, 364, 469, 571
CviJI	RGCY	7 cut(s)	44, 63, 144, 236, 302, 374, 546
CviKI_1	RGCY	7 cut(s)	44, 63, 144, 236, 302, 374, 546
CviQI	GTAC	2 cut(s)	191, 703
DdeI	CTNAG	5 cut(s)	54, 132, 230, 257, 498
DpnI	GATC	5 cut(s)	76, 284, 384, 528, 738
DpnII	GATC	5 cut(s)	74, 282, 382, 526, 736
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	80, 146
Eco24I	GRGCYC	2 cut(s)	146, 238
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	3 cut(s)	24, 77, 135
EcoICRI	GAGCTC	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	247, 374, 538
EcoT14I	CCWWGG	2 cut(s)	80, 146
EcoT38I	GRGCYC	2 cut(s)	146, 238
ErhI	CCWWGG	2 cut(s)	80, 146
FaeI	CATG	8 cut(s)	21, 84, 105, 150, 283, 367, 472, 574
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	8 cut(s)	17, 80, 101, 146, 279, 363, 468, 570
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	119, 448
FriOI	GRGCYC	2 cut(s)	146, 238
Fsp4HI	GCNGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	315
Hin1II	CATG	8 cut(s)	21, 84, 105, 150, 283, 367, 472, 574
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	22, 228, 244
HphI	GGTGA	2 cut(s)	151, 528
Hpy166II	GTNNAC	5 cut(s)	157, 441, 495, 518, 557
Hpy188I	TCNGA	6 cut(s)	233, 435, 526, 614, 642, 723
Hpy188III	TCNNGA	4 cut(s)	10, 53, 280, 477
Hpy8I	GTNNAC	5 cut(s)	157, 441, 495, 518, 557
HpyAV	CCTTC	4 cut(s)	64, 186, 204, 260
HpyCH4III	ACNGT	4 cut(s)	190, 208, 522, 689
HpyCH4V	TGCA	4 cut(s)	167, 367, 441, 678
HpyF3I	CTNAG	5 cut(s)	54, 132, 230, 257, 498
Hsp92II	CATG	8 cut(s)	21, 84, 105, 150, 283, 367, 472, 574
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	5 cut(s)	74, 282, 382, 526, 736
LmnI	GCTCC	3 cut(s)	241, 296, 371
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	176, 655
MabI	ACCWGGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	5 cut(s)	76, 284, 384, 528, 738
MboI	GATC	5 cut(s)	74, 282, 382, 526, 736
MboII	GAAGA	5 cut(s)	30, 173, 284, 321, 627
MflI	RGATCY	3 cut(s)	74, 382, 736
MhlI	GDGCHC	4 cut(s)	32, 146, 238, 443
MluCI	AATT	8 cut(s)	261, 275, 304, 320, 325, 424, 448, 530
MlyI	GAGTC	2 cut(s)	31, 222
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	3 cut(s)	129, 441, 480
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	1 cut(s)	416
MspR9I	CCNGG	3 cut(s)	249, 376, 540
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	249, 376, 540
NcoI	CCATGG	2 cut(s)	80, 146
NdeII	GATC	5 cut(s)	74, 282, 382, 526, 736
NlaIII	CATG	8 cut(s)	21, 84, 105, 150, 283, 367, 472, 574
NlaIV	GGNNCC	3 cut(s)	76, 373, 587
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	2 cut(s)	30, 222
PpsI	GAGTC	2 cut(s)	30, 222
PshAI	GACNNNNGTC	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	247, 374, 538
PspGI	CCWGG	3 cut(s)	247, 374, 538
PspN4I	GGNNCC	3 cut(s)	76, 373, 587
PsuI	RGATCY	3 cut(s)	74, 382, 736
RsaI	GTAC	2 cut(s)	192, 704
RsaNI	GTAC	2 cut(s)	191, 703
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	74, 282, 382, 526, 736
SchI	GAGTC	2 cut(s)	31, 222
ScrFI	CCNGG	3 cut(s)	249, 376, 540
SduI	GDGCHC	4 cut(s)	32, 146, 238, 443
SetI	ASST	9 cut(s)	99, 115, 178, 196, 238, 304, 446, 544, 661
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	2 cut(s)	176, 655
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	8 cut(s)	261, 275, 304, 320, 325, 424, 448, 530
SsiI	CCGC	1 cut(s)	124
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	247, 374, 538
StyI	CCWWGG	2 cut(s)	80, 146
TaaI	ACNGT	4 cut(s)	190, 208, 522, 689
TaqI	TCGA	2 cut(s)	338, 602
TasI	AATT	8 cut(s)	261, 275, 304, 320, 325, 424, 448, 530
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	246, 685
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	5 cut(s)	123, 173, 191, 268, 723
TspRI	CASTG	2 cut(s)	246, 685
VneI	GTGCAC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	275, 424
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.