Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 229 |
| AgsI | TTSAA | 5 cut(s) | 59, 80, 86, 191, 221 |
| AluBI | AGCT | 1 cut(s) | 224 |
| AluI | AGCT | 1 cut(s) | 224 |
| Alw26I | GTCTC | 1 cut(s) | 214 |
| AlwI | GGATC | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 49 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| AsuII | TTCGAA | 1 cut(s) | 151 |
| AvaII | GGWCC | 1 cut(s) | 68 |
| BccI | CCATC | 1 cut(s) | 5 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BcoDI | GTCTC | 1 cut(s) | 214 |
| BfaI | CTAG | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 1 cut(s) | 112 |
| Bme18I | GGWCC | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 1 cut(s) | 112 |
| Bpu14I | TTCGAA | 1 cut(s) | 151 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 2 cut(s) | 111, 297 |
| BsaWI | WCCGGW | 1 cut(s) | 162 |
| BseDI | CCNNGG | 2 cut(s) | 111, 297 |
| BsiSI | CCGG | 2 cut(s) | 111, 163 |
| BslFI | GGGAC | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 214 |
| BsmFI | GGGAC | 1 cut(s) | 128 |
| Bsp119I | TTCGAA | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 165 |
| BspHI | TCATGA | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 1 cut(s) | 173 |
| BspT104I | TTCGAA | 1 cut(s) | 151 |
| BssECI | CCNNGG | 2 cut(s) | 111, 297 |
| BssMI | GATC | 1 cut(s) | 165 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst4CI | ACNGT | 2 cut(s) | 119, 217 |
| BstBI | TTCGAA | 1 cut(s) | 151 |
| BstKTI | GATC | 1 cut(s) | 168 |
| BstMAI | GTCTC | 1 cut(s) | 214 |
| BstMBI | GATC | 1 cut(s) | 165 |
| BstSCI | CCNGG | 1 cut(s) | 110 |
| BstX2I | RGATCY | 1 cut(s) | 165 |
| BstYI | RGATCY | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| CciI | TCATGA | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| Csp6I | GTAC | 1 cut(s) | 228 |
| CviAII | CATG | 1 cut(s) | 235 |
| CviJI | RGCY | 1 cut(s) | 224 |
| CviKI_1 | RGCY | 1 cut(s) | 224 |
| CviQI | GTAC | 1 cut(s) | 228 |
| DpnI | GATC | 1 cut(s) | 167 |
| DpnII | GATC | 1 cut(s) | 165 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco47I | GGWCC | 1 cut(s) | 68 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FaeI | CATG | 1 cut(s) | 238 |
| FaiI | YATR | 7 cut(s) | 128, 135, 176, 236, 249, 285, 293 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 37, 69 |
| FaqI | GGGAC | 1 cut(s) | 128 |
| FatI | CATG | 1 cut(s) | 234 |
| FspBI | CTAG | 1 cut(s) | 319 |
| HapII | CCGG | 2 cut(s) | 111, 163 |
| Hin1II | CATG | 1 cut(s) | 238 |
| HindIII | AAGCTT | 1 cut(s) | 222 |
| HinfI | GANTC | 1 cut(s) | 207 |
| HpaII | CCGG | 2 cut(s) | 111, 163 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 1 cut(s) | 235 |
| HpyAV | CCTTC | 2 cut(s) | 80, 232 |
| HpyCH4III | ACNGT | 2 cut(s) | 119, 217 |
| HpyCH4V | TGCA | 2 cut(s) | 27, 108 |
| Hsp92II | CATG | 1 cut(s) | 238 |
| Kzo9I | GATC | 1 cut(s) | 165 |
| LmnI | GCTCC | 1 cut(s) | 280 |
| LpnPI | CCDG | 2 cut(s) | 124, 176 |
| MaeI | CTAG | 1 cut(s) | 319 |
| MalI | GATC | 1 cut(s) | 167 |
| MboI | GATC | 1 cut(s) | 165 |
| MboII | GAAGA | 1 cut(s) | 57 |
| MflI | RGATCY | 1 cut(s) | 165 |
| MlyI | GAGTC | 1 cut(s) | 216 |
| MmeI | TCCRAC | 2 cut(s) | 22, 95 |
| MroXI | GAANNNNTTC | 1 cut(s) | 49 |
| MseI | TTAA | 1 cut(s) | 269 |
| MspI | CCGG | 2 cut(s) | 111, 163 |
| MspR9I | CCNGG | 1 cut(s) | 112 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NdeII | GATC | 1 cut(s) | 165 |
| NlaIII | CATG | 1 cut(s) | 238 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NspV | TTCGAA | 1 cut(s) | 151 |
| PagI | TCATGA | 1 cut(s) | 234 |
| PdmI | GAANNNNTTC | 1 cut(s) | 49 |
| PleI | GAGTC | 1 cut(s) | 215 |
| PpsI | GAGTC | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| PsuI | RGATCY | 1 cut(s) | 165 |
| RsaI | GTAC | 1 cut(s) | 229 |
| RsaNI | GTAC | 1 cut(s) | 228 |
| SaqAI | TTAA | 1 cut(s) | 269 |
| Sau3AI | GATC | 1 cut(s) | 165 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| SchI | GAGTC | 1 cut(s) | 216 |
| ScrFI | CCNGG | 1 cut(s) | 112 |
| SetI | ASST | 4 cut(s) | 42, 91, 226, 320 |
| SfuI | TTCGAA | 1 cut(s) | 151 |
| SinI | GGWCC | 1 cut(s) | 68 |
| SspMI | CTAG | 1 cut(s) | 319 |
| StyD4I | CCNGG | 1 cut(s) | 110 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 2 cut(s) | 119, 217 |
| TaqI | TCGA | 2 cut(s) | 151, 205 |
| TatI | WGTACW | 1 cut(s) | 227 |
| Tru1I | TTAA | 1 cut(s) | 269 |
| Tru9I | TTAA | 1 cut(s) | 269 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TspDTI | ATGAA | 3 cut(s) | 153, 223, 251 |
| TspRI | CASTG | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 1 cut(s) | 68 |
| XmnI | GAANNNNTTC | 1 cut(s) | 49 |
| XspI | CTAG | 1 cut(s) | 319 |