Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

66739178 .. 66743168

Gene Structure 3991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGCCTCCCAATTCTCACCGTCACACTCGCTCTCGCTCTCACTCTCACTCTCACTCTCACTCTCACGCGCCTCCGCCGCCGCAGCTCGTCTCCATCGACCCCAAAATCTGGCGGGCCTGCGCCGGCAACTCCGTCACCATCCCCACTCTCCATTCTAGGGTTTACTACTTCCCCCAAGGCCACCTCGAACACTCCACCTCCTCCTCCTCCGCTCCGGTTCTTCTCTCTCCTCTCGTCCTCTCCCAGCCCCTTATTCTCTGCCGCATCGCCGCCGTCCAGTTCCTCGCTGATCCCACCACCGACGAGGTCCTCGCCAAGCTCCTCCTCCATCCTGTTCACTCCGGACTCTCCCCTCACCACCGCGAACTGAGCGCCGCCGCCGCGGCGGAGGAGGGAGAGGAGGAGGACGACGGCGGCGATAGGGTGGTGTCGTTCGCTAAGATCTTGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGAGGTTCTGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACCCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGCGGGACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCGTCGCCGGCGACTCTGTGGTGTTCATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTGAGGCGGGCCGTGAGGGCGAGCGCCGGCGGCGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAACGTTCTGGAGGTGACGGGTTTAAGACGAGGCTTTCGGCGGAGGCTGTGGCGGAGGCTGCCGAGATGGCGGCGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCAGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCACTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTGTCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAATCGAAACTGCAACTCGACAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGCACTGGGGGCGGTGGCAATATAGGGTATAATGAAACTGAACTTTTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

608

Amino Acids

66.55

Weight (kDa)

6.45

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	145 - 247	9.2e-23	B3 DNA binding domain
BRWD_AD	PF25313	293 - 394	9.8e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	312 - 395	1e-27	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	762
Acc36I	ACCTGC	2 cut(s)	576, 762
AccB1I	GGYRCC	1 cut(s)	1492
AccB7I	CCANNNNNTGG	2 cut(s)	108, 639
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	4 cut(s)	68, 363, 383, 606
AccIII	TCCGGA	2 cut(s)	341, 1072
AclI	AACGTT	1 cut(s)	811
AclWI	GGATC	4 cut(s)	284, 1089, 1102, 1764
AcoI	YGGCCR	1 cut(s)	1005
AcsI	RAATTY	2 cut(s)	1295, 1444
AcuI	CTGAAG	4 cut(s)	815, 1044, 1097, 1155
AfaI	GTAC	3 cut(s)	722, 1212, 1819
AfiI	CCNNNNNNNGG	8 cut(s)	108, 157, 639, 711, 920, 1079, 1091, 1313
AjnI	CCWGG	4 cut(s)	528, 1028, 1267, 1394
AluBI	AGCT	9 cut(s)	85, 319, 702, 780, 920, 1256, 1322, 1805, 1814
AluI	AGCT	9 cut(s)	85, 319, 702, 780, 920, 1256, 1322, 1805, 1814
Alw21I	GWGCWC	4 cut(s)	704, 782, 1258, 1463
Alw26I	GTCTC	5 cut(s)	94, 1007, 1240, 1431, 1804
Alw44I	GTGCAC	1 cut(s)	1459
AlwI	GGATC	4 cut(s)	284, 1089, 1102, 1764
Ama87I	CYCGRG	1 cut(s)	487
Aor13HI	TCCGGA	2 cut(s)	341, 1072
AoxI	GGCC	6 cut(s)	114, 178, 738, 927, 1005, 1082
ApaLI	GTGCAC	1 cut(s)	1459
ApeKI	GCWGC	4 cut(s)	82, 866, 1273, 1319
ApoI	RAATTY	2 cut(s)	1295, 1444
ArsI	GACNNNNNNTTYG	4 cut(s)	826, 858, 878, 910
Asp700I	GAANNNNTTC	1 cut(s)	1639
AspLEI	GCGC	5 cut(s)	70, 122, 374, 755, 883
AspS9I	GGNCC	6 cut(s)	114, 307, 544, 738, 927, 1082
AsuC2I	CCSGG	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	307, 544
BaeGI	GKGCMC	2 cut(s)	1052, 1463
BalI	TGGCCA	1 cut(s)	1007
BamHI	GGATCC	1 cut(s)	1094
BanI	GGYRCC	1 cut(s)	1492
BanII	GRGCYC	4 cut(s)	704, 782, 1166, 1258
BarI	GAAGNNNNNNTAC	2 cut(s)	1203, 1235
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	4 cut(s)	704, 782, 1258, 1463
BbvI	GCAGC	4 cut(s)	94, 853, 1260, 1331
BccI	CCATC	6 cut(s)	101, 146, 336, 868, 997, 1595
BceAI	ACGGC	6 cut(s)	257, 427, 589, 725, 877, 999
BciT130I	CCWGG	4 cut(s)	530, 1030, 1269, 1396
BciVI	GTATCC	1 cut(s)	1426
BclI	TGATCA	1 cut(s)	1546
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	5 cut(s)	94, 1007, 1240, 1431, 1804
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	1142
BfoI	RGCGCY	2 cut(s)	375, 756
BfuAI	ACCTGC	2 cut(s)	576, 762
BfuI	GTATCC	1 cut(s)	1426
BglI	GCCNNNNNGGC	3 cut(s)	383, 746, 875
BglII	AGATCT	2 cut(s)	441, 1402
BlpI	GCTNAGC	1 cut(s)	534
Bme1390I	CCNGG	5 cut(s)	530, 616, 1030, 1269, 1396
Bme18I	GGWCC	2 cut(s)	307, 544
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	6 cut(s)	114, 307, 544, 738, 927, 1082
BmiI	GGNNCC	3 cut(s)	1096, 1393, 1494
BmrFI	CCNGG	5 cut(s)	530, 616, 1030, 1269, 1396
BmrI	ACTGGG	1 cut(s)	1710
BmsI	GCATC	5 cut(s)	273, 448, 654, 1196, 1675
BmuI	ACTGGG	1 cut(s)	1710
BoxI	GACNNNNGTC	1 cut(s)	1628
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	4 cut(s)	661, 688, 837, 1012
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	1605
BsaWI	WCCGGW	4 cut(s)	214, 341, 1072, 1313
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	8 cut(s)	108, 157, 639, 711, 920, 1079, 1091, 1313
Bse118I	RCCGGY	5 cut(s)	122, 541, 635, 674, 755
Bse1I	ACTGG	3 cut(s)	277, 1705, 1758
Bse8I	GATNNNNATC	1 cut(s)	1605
BseAI	TCCGGA	2 cut(s)	341, 1072
BseBI	CCWGG	4 cut(s)	530, 1030, 1269, 1396
BseGI	GGATG	6 cut(s)	138, 328, 996, 1038, 1132, 1461
BseJI	GATNNNNATC	1 cut(s)	1605
BseLI	CCNNNNNNNGG	8 cut(s)	108, 157, 639, 711, 920, 1079, 1091, 1313
BseMII	CTCAG	5 cut(s)	359, 525, 1268, 1509, 1815
BseNI	ACTGG	3 cut(s)	277, 1705, 1758
BseSI	GKGCMC	2 cut(s)	1052, 1463
BseXI	GCAGC	4 cut(s)	94, 853, 1260, 1331
BseYI	CCCAGC	3 cut(s)	243, 920, 986
BsgI	GTGCAG	1 cut(s)	554
Bsh1236I	CGCG	4 cut(s)	68, 363, 383, 606
BshFI	GGCC	6 cut(s)	116, 180, 740, 929, 1007, 1084
BshNI	GGYRCC	1 cut(s)	1492
BsiHKAI	GWGCWC	4 cut(s)	704, 782, 1258, 1463
BsiHKCI	CYCGRG	1 cut(s)	487
BslFI	GGGAC	3 cut(s)	470, 599, 622
BslI	CCNNNNNNNGG	8 cut(s)	108, 157, 639, 711, 920, 1079, 1091, 1313
BsmAI	GTCTC	5 cut(s)	94, 1007, 1240, 1431, 1804
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	470, 599, 622
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	6 cut(s)	116, 180, 740, 929, 1007, 1084
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	6 cut(s)	704, 782, 1052, 1166, 1258, 1463
Bsp13I	TCCGGA	2 cut(s)	341, 1072
Bsp143I	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
Bsp1720I	GCTNAGC	1 cut(s)	534
Bsp19I	CCATGG	3 cut(s)	1008, 1100, 1166
BspANI	GGCC	6 cut(s)	116, 180, 740, 929, 1007, 1084
BspCNI	CTCAG	5 cut(s)	360, 526, 1269, 1510, 1814
BspEI	TCCGGA	2 cut(s)	341, 1072
BspFNI	CGCG	4 cut(s)	68, 363, 383, 606
BspHI	TCATGA	2 cut(s)	693, 1299
BspLI	GGNNCC	3 cut(s)	1096, 1393, 1494
BspMAI	CTGCAG	1 cut(s)	1146
BspMI	ACCTGC	2 cut(s)	576, 762
BspPI	GGATC	4 cut(s)	284, 1089, 1102, 1764
BspT107I	GGYRCC	1 cut(s)	1492
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	5 cut(s)	122, 541, 635, 674, 755
BsrI	ACTGG	3 cut(s)	277, 1705, 1758
BssAI	RCCGGY	5 cut(s)	122, 541, 635, 674, 755
BssMI	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
BssT1I	CCWWGG	6 cut(s)	175, 1008, 1085, 1100, 1166, 1496
Bst2UI	CCWGG	4 cut(s)	530, 1030, 1269, 1396
Bst4CI	ACNGT	4 cut(s)	20, 1210, 1228, 1542
Bst6I	CTCTTC	2 cut(s)	1206, 1499
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	9 cut(s)	114, 118, 124, 676, 738, 751, 757, 1381, 1385
BstDEI	CTNAG	7 cut(s)	368, 438, 534, 1152, 1277, 1518, 1801
BstDSI	CCRYGG	5 cut(s)	381, 604, 1008, 1100, 1166
BstF5I	GGATG	6 cut(s)	138, 328, 996, 1038, 1132, 1461
BstFNI	CGCG	4 cut(s)	68, 363, 383, 606
BstH2I	RGCGCY	2 cut(s)	375, 756
BstHHI	GCGC	5 cut(s)	70, 122, 374, 755, 883
BstKTI	GATC	6 cut(s)	292, 444, 1097, 1405, 1549, 1759
BstMAI	GTCTC	5 cut(s)	94, 1007, 1240, 1431, 1804
BstMBI	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
BstNI	CCWGG	4 cut(s)	530, 1030, 1269, 1396
BstNSI	RCATGY	2 cut(s)	892, 1387
BstPAI	GACNNNNGTC	1 cut(s)	1628
BstSCI	CCNGG	5 cut(s)	528, 614, 1028, 1267, 1394
BstSFI	CTRYAG	1 cut(s)	1142
BstSLI	GKGCMC	2 cut(s)	1052, 1463
BstUI	CGCG	4 cut(s)	68, 363, 383, 606
BstV1I	GCAGC	4 cut(s)	94, 853, 1260, 1331
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	4 cut(s)	441, 1094, 1402, 1756
BstYI	RGATCY	4 cut(s)	441, 1094, 1402, 1756
BsuI	GTATCC	1 cut(s)	1426
BsuRI	GGCC	6 cut(s)	116, 180, 740, 929, 1007, 1084
BtgI	CCRYGG	5 cut(s)	381, 604, 1008, 1100, 1166
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	6 cut(s)	138, 328, 996, 1038, 1132, 1461
BtsIMutI	CAGTG	2 cut(s)	1259, 1698
BveI	ACCTGC	2 cut(s)	576, 762
Cac8I	GCNNGC	9 cut(s)	114, 118, 124, 676, 738, 751, 757, 1381, 1385
CciI	TCATGA	2 cut(s)	693, 1299
CfoI	GCGC	5 cut(s)	70, 122, 374, 755, 883
Cfr10I	RCCGGY	5 cut(s)	122, 541, 635, 674, 755
Cfr13I	GGNCC	6 cut(s)	114, 307, 544, 738, 927, 1082
Cfr42I	CCGCGG	2 cut(s)	384, 607
Csp6I	GTAC	3 cut(s)	721, 1211, 1818
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviQI	GTAC	3 cut(s)	721, 1211, 1818
DdeI	CTNAG	7 cut(s)	368, 438, 534, 1152, 1277, 1518, 1801
DpnI	GATC	6 cut(s)	291, 443, 1096, 1404, 1548, 1758
DpnII	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
EaeI	YGGCCR	1 cut(s)	1005
Eam1104I	CTCTTC	2 cut(s)	1206, 1499
EarI	CTCTTC	2 cut(s)	1206, 1499
EciI	GGCGGA	5 cut(s)	63, 401, 581, 863, 875
Ecl136II	GAGCTC	3 cut(s)	702, 780, 1256
Eco130I	CCWWGG	6 cut(s)	175, 1008, 1085, 1100, 1166, 1496
Eco24I	GRGCYC	4 cut(s)	704, 782, 1166, 1258
Eco47I	GGWCC	2 cut(s)	307, 544
Eco53kI	GAGCTC	3 cut(s)	702, 780, 1256
Eco57I	CTGAAG	4 cut(s)	815, 1044, 1097, 1155
Eco88I	CYCGRG	1 cut(s)	487
EcoICRI	GAGCTC	3 cut(s)	702, 780, 1256
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	1295
EcoRII	CCWGG	4 cut(s)	528, 1028, 1267, 1394
EcoT14I	CCWWGG	6 cut(s)	175, 1008, 1085, 1100, 1166, 1496
EcoT38I	GRGCYC	4 cut(s)	704, 782, 1166, 1258
ErhI	CCWWGG	6 cut(s)	175, 1008, 1085, 1100, 1166, 1496
Esp3I	CGTCTC	1 cut(s)	94
FalI	AAGNNNNNCTT	2 cut(s)	1627, 1659
FaqI	GGGAC	3 cut(s)	470, 599, 622
FauI	CCCGC	4 cut(s)	105, 522, 599, 729
FbaI	TGATCA	1 cut(s)	1546
FokI	GGATG	6 cut(s)	125, 315, 1003, 1045, 1139, 1468
FriOI	GRGCYC	4 cut(s)	704, 782, 1166, 1258
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	5 cut(s)	69, 121, 373, 754, 882
GsaI	CCCAGC	3 cut(s)	247, 924, 990
GsuI	CTGGAG	4 cut(s)	661, 688, 837, 1012
HaeII	RGCGCY	2 cut(s)	375, 756
HaeIII	GGCC	6 cut(s)	116, 180, 740, 929, 1007, 1084
HhaI	GCGC	5 cut(s)	70, 122, 374, 755, 883
Hin6I	GCGC	5 cut(s)	68, 120, 372, 753, 881
HinP1I	GCGC	5 cut(s)	68, 120, 372, 753, 881
HincII	GTYRAC	2 cut(s)	1177, 1515
HindII	GTYRAC	2 cut(s)	1177, 1515
HindIII	AAGCTT	1 cut(s)	1812
Hpy166II	GTNNAC	7 cut(s)	163, 337, 1177, 1461, 1515, 1538, 1577
Hpy188I	TCNGA	8 cut(s)	457, 802, 915, 1253, 1455, 1546, 1634, 1662
Hpy8I	GTNNAC	7 cut(s)	163, 337, 1177, 1461, 1515, 1538, 1577
Hpy99I	CGWCG	4 cut(s)	305, 413, 674, 728
HpyAV	CCTTC	8 cut(s)	462, 937, 955, 964, 1084, 1206, 1224, 1670
HpyCH4III	ACNGT	4 cut(s)	20, 1210, 1228, 1542
HpyCH4IV	ACGT	2 cut(s)	723, 811
HpyCH4V	TGCA	7 cut(s)	571, 1144, 1187, 1387, 1461, 1617, 1698
HpyF3I	CTNAG	7 cut(s)	368, 438, 534, 1152, 1277, 1518, 1801
HpySE526I	ACGT	2 cut(s)	723, 811
HspAI	GCGC	5 cut(s)	68, 120, 372, 753, 881
Kpn2I	TCCGGA	2 cut(s)	341, 1072
KroI	GCCGGC	3 cut(s)	122, 674, 755
KroNI	GCCGGC	3 cut(s)	124, 676, 757
Ksp22I	TGATCA	1 cut(s)	1546
KspI	CCGCGG	2 cut(s)	384, 607
Kzo9I	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
LmnI	GCTCC	9 cut(s)	217, 324, 642, 699, 707, 777, 1261, 1316, 1391
Lsp1109I	GCAGC	4 cut(s)	94, 853, 1260, 1331
LweI	GCATC	5 cut(s)	273, 448, 654, 1196, 1675
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	723, 811
MaeIII	GTNAC	5 cut(s)	20, 133, 559, 821, 1117
MalI	GATC	6 cut(s)	291, 443, 1096, 1404, 1548, 1758
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
MboII	GAAGA	6 cut(s)	212, 1050, 1193, 1304, 1516, 1647
MflI	RGATCY	4 cut(s)	441, 1094, 1402, 1756
MhlI	GDGCHC	6 cut(s)	704, 782, 1052, 1166, 1258, 1463
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	7 cut(s)	10, 1295, 1324, 1340, 1444, 1468, 1550
MluNI	TGGCCA	1 cut(s)	1007
MlyI	GAGTC	9 cut(s)	339, 442, 497, 604, 674, 1005, 1016, 1242, 1806
MmeI	TCCRAC	2 cut(s)	780, 1612
Mox20I	TGGCCA	1 cut(s)	1007
MreI	CGCCGGCG	2 cut(s)	674, 755
MroI	TCCGGA	2 cut(s)	341, 1072
MroNI	GCCGGC	3 cut(s)	122, 674, 755
MroXI	GAANNNNTTC	1 cut(s)	1639
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	3 cut(s)	522, 831, 1436
Msp20I	TGGCCA	1 cut(s)	1007
MspA1I	CMGCKG	3 cut(s)	383, 606, 1805
MspR9I	CCNGG	5 cut(s)	530, 616, 1030, 1269, 1396
Mva1269I	GAATGC	1 cut(s)	1153
MvaI	CCWGG	4 cut(s)	530, 1030, 1269, 1396
MvnI	CGCG	4 cut(s)	68, 363, 383, 606
NaeI	GCCGGC	3 cut(s)	124, 676, 757
NciI	CCSGG	1 cut(s)	616
NcoI	CCATGG	3 cut(s)	1008, 1100, 1166
NdeII	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
NgoMIV	GCCGGC	3 cut(s)	122, 674, 755
NlaIV	GGNNCC	3 cut(s)	1096, 1393, 1494
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	4 cut(s)	20, 133, 559, 821
NspI	RCATGY	2 cut(s)	892, 1387
PaeI	GCATGC	1 cut(s)	1387
PagI	TCATGA	2 cut(s)	693, 1299
PaqCI	CACCTGC	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 414, 675
PctI	GAATGC	1 cut(s)	1153
PdiI	GCCGGC	3 cut(s)	124, 676, 757
PdmI	GAANNNNTTC	1 cut(s)	1639
PfeI	GAWTC	2 cut(s)	1264, 1606
PflFI	GACNNNGTC	1 cut(s)	305
PflMI	CCANNNNNTGG	2 cut(s)	108, 639
PfoI	TCCNGGA	1 cut(s)	1028
PleI	GAGTC	9 cut(s)	339, 442, 497, 604, 674, 1004, 1016, 1242, 1805
PpsI	GAGTC	9 cut(s)	339, 442, 497, 604, 674, 1004, 1016, 1242, 1805
PpuMI	RGGWCCY	1 cut(s)	307
PshAI	GACNNNNGTC	1 cut(s)	1628
Psp124BI	GAGCTC	3 cut(s)	704, 782, 1258
Psp1406I	AACGTT	1 cut(s)	811
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	4 cut(s)	528, 1028, 1267, 1394
PspFI	CCCAGC	3 cut(s)	243, 920, 986
PspGI	CCWGG	4 cut(s)	528, 1028, 1267, 1394
PspN4I	GGNNCC	3 cut(s)	1096, 1393, 1494
PspPI	GGNCC	6 cut(s)	114, 307, 544, 738, 927, 1082
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	1146
PsuI	RGATCY	4 cut(s)	441, 1094, 1402, 1756
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	1805
RsaI	GTAC	3 cut(s)	722, 1212, 1819
RsaNI	GTAC	3 cut(s)	721, 1211, 1818
SacI	GAGCTC	3 cut(s)	704, 782, 1258
SacII	CCGCGG	2 cut(s)	384, 607
SaqAI	TTAA	3 cut(s)	522, 831, 1436
Sau3AI	GATC	6 cut(s)	289, 441, 1094, 1402, 1546, 1756
Sau96I	GGNCC	6 cut(s)	114, 307, 544, 738, 927, 1082
SchI	GAGTC	9 cut(s)	339, 442, 497, 604, 674, 1005, 1016, 1242, 1806
ScrFI	CCNGG	5 cut(s)	530, 616, 1030, 1269, 1396
SduI	GDGCHC	6 cut(s)	704, 782, 1052, 1166, 1258, 1463
SfaNI	GCATC	5 cut(s)	273, 448, 654, 1196, 1675
SfcI	CTRYAG	1 cut(s)	1142
Sfr303I	CCGCGG	2 cut(s)	384, 607
SgrAI	CRCCGGYG	2 cut(s)	674, 755
SgrBI	CCGCGG	2 cut(s)	384, 607
SinI	GGWCC	2 cut(s)	307, 544
SphI	GCATGC	1 cut(s)	1387
Sse9I	AATT	7 cut(s)	10, 1295, 1324, 1340, 1444, 1468, 1550
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	3 cut(s)	704, 782, 1258
StyD4I	CCNGG	5 cut(s)	528, 614, 1028, 1267, 1394
StyI	CCWWGG	6 cut(s)	175, 1008, 1085, 1100, 1166, 1496
TaaI	ACNGT	4 cut(s)	20, 1210, 1228, 1542
TaiI	ACGT	2 cut(s)	726, 814
TaqI	TCGA	6 cut(s)	96, 186, 506, 1609, 1622, 1795
TasI	AATT	7 cut(s)	10, 1295, 1324, 1340, 1444, 1468, 1550
TatI	WGTACW	1 cut(s)	1817
TfiI	GAWTC	2 cut(s)	1264, 1606
Tru1I	TTAA	3 cut(s)	522, 831, 1436
Tru9I	TTAA	3 cut(s)	522, 831, 1436
TscAI	CASTG	2 cut(s)	1266, 1705
TseFI	GTSAC	4 cut(s)	20, 133, 559, 821
TseI	GCWGC	4 cut(s)	82, 866, 1273, 1319
Tsp45I	GTSAC	4 cut(s)	20, 133, 559, 821
TspDTI	ATGAA	7 cut(s)	682, 1143, 1193, 1211, 1288, 1455, 1743
TspGWI	ACGGA	2 cut(s)	121, 547
TspRI	CASTG	2 cut(s)	1266, 1705
Tth111I	GACNNNGTC	1 cut(s)	305
Van91I	CCANNNNNTGG	2 cut(s)	108, 639
VneI	GTGCAC	1 cut(s)	1459
VpaK11BI	GGWCC	2 cut(s)	307, 544
XapI	RAATTY	2 cut(s)	1295, 1444
XceI	RCATGY	2 cut(s)	892, 1387
XmnI	GAANNNNTTC	1 cut(s)	1639
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.