Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

2080966 .. 2085753

Gene Structure 4788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGCAGCTTGGTGGTCTCGACTCCTATCTCACCGGCTCTCCTTACTCCAAGCTTGCCATTGTTGTGTACTAATGATGCTCTTGTGCTTCCTCGGGTAGGGAATCTGATTCCTATTTCAGAAGTACAAGATGTAGTAGCTGCATATAGAAAGGACATGGAGTGGCAGACAAGTGAGCTACTTCTTCCACACAAGAAAATGTGTGATCTTAAGAAGGTGCAAGTTGATGTTGTAGTCATTGAGTCAGATAATATGGCAAATGCAATAGCAGAGGAGTTTCTAAGCAGAGGTGGTGGAGAAAGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAATCAAGATGGCATGGAGACTGATGACTCGTCCAGGATGACTTGGATTCAGGGCACTCTGTCTTCAGCCTTTGTTCCTGAGAATGGGTCTTATCCCCATGGCGTATGCTTCAGGGAGTTGAGGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACAGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAACTCCACTGAATCCCGGTCTGCTGAGAATTGAAGGGGAAGAATTCATGATACCTATGACTGGAGCAGCTAATTTAACAATGGGGCAATTCAATTCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTCTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTCTGGCAACAACAACATGGTGTCAAGATTGATGAGGGTGTCTACTGAGTTGAACATTGGTAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACGGCAACTCGACATTTGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCACTCAACTCGAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGGTCTTTCTTATGCCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAATTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

388

Amino Acids

42.5

Weight (kDa)

4.67

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	116 - 175	1.2e-09	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	854
AcsI	RAATTY	2 cut(s)	635, 784
AcuI	CTGAAG	3 cut(s)	381, 427, 495
AfaI	GTAC	5 cut(s)	70, 126, 552, 1064, 1159
AfiI	CCNNNNNNNGG	3 cut(s)	98, 416, 653
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	8 cut(s)	308, 626, 685, 700, 865, 989, 1121, 1151
AjnI	CCWGG	2 cut(s)	365, 734
AluBI	AGCT	6 cut(s)	9, 54, 140, 178, 662, 1154
AluI	AGCT	6 cut(s)	9, 54, 140, 178, 662, 1154
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	4 cut(s)	22, 344, 580, 1144
Alw44I	GTGCAC	1 cut(s)	799
Ama87I	CYCGRG	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	799
ApeKI	GCWGC	3 cut(s)	6, 140, 659
ApoI	RAATTY	2 cut(s)	635, 784
Asp700I	GAANNNNTTC	1 cut(s)	979
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	24, 511, 888
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	2 cut(s)	389, 803
BanII	GRGCYC	1 cut(s)	506
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	803
BbvI	GCAGC	3 cut(s)	18, 127, 671
BccI	CCATC	2 cut(s)	335, 935
BceAI	ACGGC	2 cut(s)	337, 970
BciT130I	CCWGG	2 cut(s)	367, 736
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	4 cut(s)	22, 344, 580, 1144
BfmI	CTRYAG	1 cut(s)	482
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	3 cut(s)	7, 141, 660
BlsI	GCNGC	3 cut(s)	8, 142, 661
Bme1390I	CCNGG	3 cut(s)	367, 609, 736
BmeT110I	CYCGRG	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	733, 947
BmrFI	CCNGG	3 cut(s)	367, 609, 736
BmrI	ACTGGG	2 cut(s)	1050, 1103
BmsI	GCATC	3 cut(s)	67, 536, 1015
BmuI	ACTGGG	2 cut(s)	1050, 1103
BoxI	GACNNNNGTC	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	92, 430, 506, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 416, 653
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	3 cut(s)	658, 1045, 1098
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	367, 736
BseDI	CCNNGG	4 cut(s)	92, 430, 506, 791
BseGI	GGATG	4 cut(s)	334, 375, 472, 801
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	98, 416, 653
BseMII	CTCAG	4 cut(s)	402, 604, 608, 849
BseNI	ACTGG	3 cut(s)	658, 1045, 1098
BseRI	GAGGAG	2 cut(s)	287, 780
BseSI	GKGCMC	2 cut(s)	389, 803
BseXI	GCAGC	3 cut(s)	18, 127, 671
BseYI	CCCAGC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	803
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	35, 609
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	3 cut(s)	98, 416, 653
BsmAI	GTCTC	4 cut(s)	22, 344, 580, 1144
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	1 cut(s)	493
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	389, 506, 803
Bsp143I	GATC	3 cut(s)	205, 742, 886
Bsp19I	CCATGG	2 cut(s)	430, 506
BspCNI	CTCAG	4 cut(s)	403, 603, 609, 850
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	733, 947
BspMAI	CTGCAG	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	658, 1045, 1098
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	92, 430, 506, 791
BssMI	GATC	3 cut(s)	205, 742, 886
BssT1I	CCWWGG	2 cut(s)	430, 506
Bst2UI	CCWGG	2 cut(s)	367, 736
Bst4CI	ACNGT	4 cut(s)	550, 568, 882, 1049
Bst6I	CTCTTC	1 cut(s)	546
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	56, 721, 725
BstDEI	CTNAG	6 cut(s)	281, 411, 492, 590, 617, 858
BstDSI	CCRYGG	2 cut(s)	430, 506
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstF5I	GGATG	4 cut(s)	334, 375, 472, 801
BstKTI	GATC	3 cut(s)	208, 745, 889
BstMAI	GTCTC	4 cut(s)	22, 344, 580, 1144
BstMBI	GATC	3 cut(s)	205, 742, 886
BstNI	CCWGG	2 cut(s)	367, 736
BstNSI	RCATGY	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	968
BstSCI	CCNGG	3 cut(s)	365, 607, 734
BstSFI	CTRYAG	1 cut(s)	482
BstSLI	GKGCMC	2 cut(s)	389, 803
BstV1I	GCAGC	3 cut(s)	18, 127, 671
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	766
BtgI	CCRYGG	2 cut(s)	430, 506
BtsCI	GGATG	4 cut(s)	334, 375, 472, 801
BtsIMutI	CAGTG	2 cut(s)	599, 1038
Cac8I	GCNNGC	3 cut(s)	56, 721, 725
CciI	TCATGA	1 cut(s)	639
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	5 cut(s)	69, 125, 551, 1063, 1158
CviAII	CATG	9 cut(s)	157, 346, 431, 462, 507, 640, 724, 829, 931
CviQI	GTAC	5 cut(s)	69, 125, 551, 1063, 1158
DdeI	CTNAG	6 cut(s)	281, 411, 492, 590, 617, 858
DpnI	GATC	3 cut(s)	207, 744, 888
DpnII	GATC	3 cut(s)	205, 742, 886
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	430, 506
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	22
Eco57I	CTGAAG	3 cut(s)	381, 427, 495
Eco88I	CYCGRG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	365, 734
EcoT14I	CCWWGG	2 cut(s)	430, 506
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	430, 506
FaeI	CATG	9 cut(s)	160, 349, 434, 465, 510, 643, 727, 832, 934
FalI	AAGNNNNNCTT	2 cut(s)	967, 999
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	9 cut(s)	156, 345, 430, 461, 506, 639, 723, 828, 930
FbaI	TGATCA	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	3 cut(s)	7, 141, 660
FokI	GGATG	4 cut(s)	341, 382, 479, 808
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	7, 141, 660
GluI	GCNGC	3 cut(s)	7, 141, 660
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	675
HapII	CCGG	2 cut(s)	35, 609
Hin1II	CATG	9 cut(s)	160, 349, 434, 465, 510, 643, 727, 832, 934
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	52, 1152
HpaII	CCGG	2 cut(s)	35, 609
HphI	GGTGA	3 cut(s)	24, 511, 888
Hpy166II	GTNNAC	6 cut(s)	69, 517, 801, 855, 878, 917
Hpy188I	TCNGA	9 cut(s)	108, 121, 247, 593, 795, 886, 974, 1002, 1083
Hpy188III	TCNNGA	5 cut(s)	19, 338, 410, 640, 837
Hpy8I	GTNNAC	6 cut(s)	69, 517, 801, 855, 878, 917
HpyAV	CCTTC	6 cut(s)	208, 302, 546, 564, 620, 1010
HpyCH4III	ACNGT	4 cut(s)	550, 568, 882, 1049
HpyCH4V	TGCA	8 cut(s)	143, 220, 263, 484, 527, 727, 801, 1038
HpyF3I	CTNAG	6 cut(s)	281, 411, 492, 590, 617, 858
Hsp92II	CATG	9 cut(s)	160, 349, 434, 465, 510, 643, 727, 832, 934
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	205, 742, 886
LmnI	GCTCC	2 cut(s)	656, 731
Lsp1109I	GCAGC	3 cut(s)	18, 127, 671
LweI	GCATC	3 cut(s)	67, 536, 1015
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	3 cut(s)	207, 744, 888
MboI	GATC	3 cut(s)	205, 742, 886
MboII	GAAGA	6 cut(s)	176, 387, 533, 644, 681, 987
MfeI	CAATTG	1 cut(s)	1143
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	3 cut(s)	389, 506, 803
MluCI	AATT	9 cut(s)	621, 635, 664, 680, 685, 784, 808, 890, 1143
MlyI	GAGTC	5 cut(s)	16, 251, 353, 582, 1146
MmeI	TCCRAC	1 cut(s)	952
MnlI	CCTC	8 cut(s)	102, 265, 281, 447, 489, 801, 823, 840
MroXI	GAANNNNTTC	1 cut(s)	979
MseI	TTAA	3 cut(s)	210, 668, 776
MslI	CAYNNNNRTG	1 cut(s)	64
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	35, 609
MspR9I	CCNGG	3 cut(s)	367, 609, 736
MunI	CAATTG	1 cut(s)	1143
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	367, 736
NciI	CCSGG	1 cut(s)	609
NcoI	CCATGG	2 cut(s)	430, 506
NdeII	GATC	3 cut(s)	205, 742, 886
NlaIII	CATG	9 cut(s)	160, 349, 434, 465, 510, 643, 727, 832, 934
NlaIV	GGNNCC	2 cut(s)	733, 947
NspI	RCATGY	1 cut(s)	727
PaeI	GCATGC	1 cut(s)	727
PagI	TCATGA	1 cut(s)	639
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	5 cut(s)	103, 109, 334, 379, 604
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	8, 142, 661
PleI	GAGTC	5 cut(s)	16, 250, 353, 582, 1145
PpsI	GAGTC	5 cut(s)	16, 250, 353, 582, 1145
PshAI	GACNNNNGTC	1 cut(s)	968
Psp6I	CCWGG	2 cut(s)	365, 734
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	2 cut(s)	365, 734
PspN4I	GGNNCC	2 cut(s)	733, 947
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	5 cut(s)	70, 126, 552, 1064, 1159
RsaNI	GTAC	5 cut(s)	69, 125, 551, 1063, 1158
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	210, 668, 776
SatI	GCNGC	3 cut(s)	7, 141, 660
Sau3AI	GATC	3 cut(s)	205, 742, 886
SchI	GAGTC	5 cut(s)	16, 251, 353, 582, 1146
ScrFI	CCNGG	3 cut(s)	367, 609, 736
SduI	GDGCHC	3 cut(s)	389, 506, 803
SfaNI	GCATC	3 cut(s)	67, 536, 1015
SfcI	CTRYAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	9 cut(s)	621, 635, 664, 680, 685, 784, 808, 890, 1143
StyD4I	CCNGG	3 cut(s)	365, 607, 734
StyI	CCWWGG	2 cut(s)	430, 506
TaaI	ACNGT	4 cut(s)	550, 568, 882, 1049
TaqI	TCGA	4 cut(s)	20, 962, 1014, 1135
TasI	AATT	9 cut(s)	621, 635, 664, 680, 685, 784, 808, 890, 1143
TatI	WGTACW	3 cut(s)	68, 124, 1157
TfiI	GAWTC	5 cut(s)	103, 109, 334, 379, 604
Tru1I	TTAA	3 cut(s)	210, 668, 776
Tru9I	TTAA	3 cut(s)	210, 668, 776
TscAI	CASTG	2 cut(s)	606, 1045
TseI	GCWGC	3 cut(s)	6, 140, 659
TspDTI	ATGAA	6 cut(s)	483, 533, 551, 628, 795, 1083
TspRI	CASTG	2 cut(s)	606, 1045
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	799
XagI	CCTNNNNNAGG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	635, 784
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.