Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011947.1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

3910 .. 6288

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgaaggaggaggtgaatgtctcactggaagttttagcacccaggcacagatcccttggatttcttccaagaaagcaagttgcttgtcatagaggaaaagcgagcactccatgcagaggtgctggagaaagcattgaaggtgttttggacggctgggatgagagtcaagatggcatggagactgatgactcgtccaggatgacttggattcagggcactctgtcttcagcctttgttccggagaatgggtcttggaagggatccccatggcgtatgcttcaggttacatgggatgaacctgaagttctgcagaatgctaagagggtgagcccatggcaagttgactttgttgcatcaacaccttctcttcatacagtaccttcgcttcatactgtatatccccccacaaagagactcagaactccactgaatcccggtctgctgagaattgaaggggaagaattcatgatacctatgactggagtagctaattcaacaatggggcaattcaattcttcattgttgaactataacatttttcctgctggcatgcagggagccaggcaagatctgttctgtgtatccaatgtatctcatttgttaaatgaaaattctcctcggatgtgcacctataattcctttggcaacaacaacatggtgtcaagattgatgagggtgtctactgagttgaacattgctagtccacagtctgatcaattatcaccaggtagccagagtagtccacattcctttggcatggaacttgatgggaaccgaaacggcaactcgacatttgtcggaagaagttcttttcaactctttggtcagaccattcaacttgaaggtattgatgctgttggttgcactggggacggtggcaatatagggtacaacgaaactgaacttctgaacaaccaactggatctttctcataccaaactgcttgaaaggattgatgttcgagtctcaactgttgaagcttgtactttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

330

Amino Acids

36.28

Weight (kDa)

5.31

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	238
AclWI	GGATC	4 cut(s)	45, 255, 268, 930
AcsI	RAATTY	2 cut(s)	461, 610
AcuI	CTGAAG	3 cut(s)	210, 263, 321
AfaI	GTAC	3 cut(s)	378, 890, 985
AfiI	CCNNNNNNNGG	3 cut(s)	116, 245, 479
AjnI	CCWGG	4 cut(s)	41, 194, 560, 724
AluBI	AGCT	2 cut(s)	488, 980
AluI	AGCT	2 cut(s)	488, 980
Alw21I	GWGCWC	2 cut(s)	107, 629
Alw26I	GTCTC	4 cut(s)	25, 173, 406, 970
Alw44I	GTGCAC	1 cut(s)	625
AlwI	GGATC	4 cut(s)	45, 255, 268, 930
Aor13HI	TCCGGA	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	625
ApoI	RAATTY	2 cut(s)	461, 610
Asp700I	GAANNNNTTC	1 cut(s)	805
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	25, 337, 714
BaeGI	GKGCMC	2 cut(s)	218, 629
BamHI	GGATCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	107, 629
BccI	CCATC	2 cut(s)	164, 761
BceAI	ACGGC	2 cut(s)	166, 796
BciT130I	CCWGG	4 cut(s)	43, 196, 562, 726
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	4 cut(s)	25, 173, 406, 970
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	568
Bme1390I	CCNGG	5 cut(s)	43, 196, 435, 562, 726
BmiI	GGNNCC	3 cut(s)	262, 559, 773
BmrFI	CCNGG	5 cut(s)	43, 196, 435, 562, 726
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	362, 841
BmuI	ACTGGG	1 cut(s)	876
BoxI	GACNNNNGTC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	2 cut(s)	144, 501
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	5 cut(s)	41, 55, 266, 332, 617
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 245, 479
Bse1I	ACTGG	4 cut(s)	30, 484, 871, 924
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	4 cut(s)	43, 196, 562, 726
BseDI	CCNNGG	5 cut(s)	41, 55, 266, 332, 617
BseGI	GGATG	4 cut(s)	163, 204, 298, 627
BseLI	CCNNNNNNNGG	3 cut(s)	116, 245, 479
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	3 cut(s)	430, 434, 675
BseNI	ACTGG	4 cut(s)	30, 484, 871, 924
BseRI	GAGGAG	2 cut(s)	23, 606
BseSI	GKGCMC	2 cut(s)	218, 629
BseYI	CCCAGC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	107, 629
BsiSI	CCGG	2 cut(s)	239, 435
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	3 cut(s)	116, 245, 479
BsmAI	GTCTC	4 cut(s)	25, 173, 406, 970
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	107, 218, 332, 629
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	50, 260, 568, 712, 922
Bsp19I	CCATGG	2 cut(s)	266, 332
BspCNI	CTCAG	3 cut(s)	429, 435, 676
BspEI	TCCGGA	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	262, 559, 773
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	4 cut(s)	45, 255, 268, 930
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	4 cut(s)	30, 484, 871, 924
BssECI	CCNNGG	5 cut(s)	41, 55, 266, 332, 617
BssMI	GATC	5 cut(s)	50, 260, 568, 712, 922
BssT1I	CCWWGG	3 cut(s)	55, 266, 332
Bst2UI	CCWGG	4 cut(s)	43, 196, 562, 726
Bst4CI	ACNGT	5 cut(s)	376, 394, 708, 875, 973
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	103, 547, 551
BstDEI	CTNAG	4 cut(s)	318, 416, 443, 684
BstDSI	CCRYGG	2 cut(s)	266, 332
BstF5I	GGATG	4 cut(s)	163, 204, 298, 627
BstKTI	GATC	5 cut(s)	53, 263, 571, 715, 925
BstMAI	GTCTC	4 cut(s)	25, 173, 406, 970
BstMBI	GATC	5 cut(s)	50, 260, 568, 712, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	4 cut(s)	43, 196, 562, 726
BstNSI	RCATGY	1 cut(s)	553
BstPAI	GACNNNNGTC	1 cut(s)	794
BstSCI	CCNGG	5 cut(s)	41, 194, 433, 560, 724
BstSFI	CTRYAG	1 cut(s)	308
BstSLI	GKGCMC	2 cut(s)	218, 629
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	4 cut(s)	50, 260, 568, 922
BstYI	RGATCY	4 cut(s)	50, 260, 568, 922
BsuI	GTATCC	1 cut(s)	592
BtgI	CCRYGG	2 cut(s)	266, 332
BtsCI	GGATG	4 cut(s)	163, 204, 298, 627
BtsIMutI	CAGTG	3 cut(s)	23, 425, 864
Cac8I	GCNNGC	3 cut(s)	103, 547, 551
CciI	TCATGA	1 cut(s)	465
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	3 cut(s)	377, 889, 984
CviAII	CATG	9 cut(s)	111, 175, 267, 288, 333, 466, 550, 655, 757
CviJI	RGCY	7 cut(s)	153, 230, 330, 488, 560, 732, 980
CviKI_1	RGCY	7 cut(s)	153, 230, 330, 488, 560, 732, 980
CviQI	GTAC	3 cut(s)	377, 889, 984
DdeI	CTNAG	4 cut(s)	318, 416, 443, 684
DpnI	GATC	5 cut(s)	52, 262, 570, 714, 924
DpnII	GATC	5 cut(s)	50, 260, 568, 712, 922
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	3 cut(s)	55, 266, 332
Eco24I	GRGCYC	1 cut(s)	332
Eco57I	CTGAAG	3 cut(s)	210, 263, 321
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	4 cut(s)	41, 194, 560, 724
EcoT14I	CCWWGG	3 cut(s)	55, 266, 332
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	3 cut(s)	55, 266, 332
FaeI	CATG	9 cut(s)	114, 178, 270, 291, 336, 469, 553, 658, 760
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	9 cut(s)	110, 174, 266, 287, 332, 465, 549, 654, 756
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	680
FokI	GGATG	4 cut(s)	170, 211, 305, 634
FriOI	GRGCYC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	699
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	144, 501
HapII	CCGG	2 cut(s)	239, 435
Hin1II	CATG	9 cut(s)	114, 178, 270, 291, 336, 469, 553, 658, 760
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	978
HinfI	GANTC	6 cut(s)	163, 188, 208, 414, 430, 963
HpaII	CCGG	2 cut(s)	239, 435
HphI	GGTGA	3 cut(s)	25, 337, 714
Hpy166II	GTNNAC	5 cut(s)	343, 627, 681, 704, 743
Hpy188I	TCNGA	6 cut(s)	419, 621, 712, 800, 828, 909
Hpy188III	TCNNGA	4 cut(s)	167, 239, 466, 663
Hpy8I	GTNNAC	5 cut(s)	343, 627, 681, 704, 743
HpyAV	CCTTC	6 cut(s)	131, 250, 372, 390, 446, 836
HpyCH4III	ACNGT	5 cut(s)	376, 394, 708, 875, 973
HpyCH4V	TGCA	6 cut(s)	114, 310, 353, 553, 627, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	4 cut(s)	318, 416, 443, 684
Hsp92II	CATG	9 cut(s)	114, 178, 270, 291, 336, 469, 553, 658, 760
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	50, 260, 568, 712, 922
LmnI	GCTCC	1 cut(s)	557
LweI	GCATC	2 cut(s)	362, 841
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	5 cut(s)	52, 262, 570, 714, 924
MboI	GATC	5 cut(s)	50, 260, 568, 712, 922
MboII	GAAGA	6 cut(s)	56, 216, 359, 470, 507, 813
MflI	RGATCY	4 cut(s)	50, 260, 568, 922
MhlI	GDGCHC	4 cut(s)	107, 218, 332, 629
MluCI	AATT	8 cut(s)	447, 461, 490, 506, 511, 610, 634, 716
MlyI	GAGTC	4 cut(s)	172, 182, 408, 972
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	6 cut(s)	4, 86, 110, 315, 627, 666
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	805
MseI	TTAA	1 cut(s)	602
MspI	CCGG	2 cut(s)	239, 435
MspR9I	CCNGG	5 cut(s)	43, 196, 435, 562, 726
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	4 cut(s)	43, 196, 562, 726
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	2 cut(s)	266, 332
NdeII	GATC	5 cut(s)	50, 260, 568, 712, 922
NlaIII	CATG	9 cut(s)	114, 178, 270, 291, 336, 469, 553, 658, 760
NlaIV	GGNNCC	3 cut(s)	262, 559, 773
NspI	RCATGY	1 cut(s)	553
PaeI	GCATGC	1 cut(s)	553
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	208, 430
PfoI	TCCNGGA	1 cut(s)	194
PleI	GAGTC	4 cut(s)	171, 182, 408, 971
PpsI	GAGTC	4 cut(s)	171, 182, 408, 971
PshAI	GACNNNNGTC	1 cut(s)	794
Psp6I	CCWGG	4 cut(s)	41, 194, 560, 724
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	4 cut(s)	41, 194, 560, 724
PspN4I	GGNNCC	3 cut(s)	262, 559, 773
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	4 cut(s)	50, 260, 568, 922
RsaI	GTAC	3 cut(s)	378, 890, 985
RsaNI	GTAC	3 cut(s)	377, 889, 984
SaqAI	TTAA	1 cut(s)	602
Sau3AI	GATC	5 cut(s)	50, 260, 568, 712, 922
SchI	GAGTC	4 cut(s)	172, 182, 408, 972
ScrFI	CCNGG	5 cut(s)	43, 196, 435, 562, 726
SduI	GDGCHC	4 cut(s)	107, 218, 332, 629
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	2 cut(s)	362, 841
SfcI	CTRYAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	8 cut(s)	447, 461, 490, 506, 511, 610, 634, 716
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	5 cut(s)	41, 194, 433, 560, 724
StyI	CCWWGG	3 cut(s)	55, 266, 332
TaaI	ACNGT	5 cut(s)	376, 394, 708, 875, 973
TaqI	TCGA	2 cut(s)	788, 961
TasI	AATT	8 cut(s)	447, 461, 490, 506, 511, 610, 634, 716
TatI	WGTACW	1 cut(s)	983
TfiI	GAWTC	2 cut(s)	208, 430
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	3 cut(s)	30, 432, 871
TspDTI	ATGAA	7 cut(s)	17, 309, 359, 377, 454, 507, 621
TspRI	CASTG	3 cut(s)	30, 432, 871
VneI	GTGCAC	1 cut(s)	625
XapI	RAATTY	2 cut(s)	461, 610
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	805
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.