Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

64234177 .. 64235895

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACATTGTTGCATCAACACCTTCTCTTCATACTATACCTTCGCTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCGAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACGTGGTGCCAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCAAAACTGCAACTTGACAAAGGTTGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGGAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

239

Amino Acids

26.11

Weight (kDa)

5.19

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	1 - 26	5.1e-06	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	3 cut(s)	188, 217, 337
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	617, 712
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	9 cut(s)	222, 238, 253, 397, 418, 542, 563, 674, 704
AjnI	CCWGG	2 cut(s)	160, 287
AluBI	AGCT	3 cut(s)	149, 698, 707
AluI	AGCT	3 cut(s)	149, 698, 707
Alw21I	GWGCWC	2 cut(s)	151, 356
Alw26I	GTCTC	2 cut(s)	133, 697
Alw44I	GTGCAC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	657
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	166, 212
ApoI	RAATTY	3 cut(s)	188, 217, 337
Asp700I	GAANNNNTTC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	64, 441
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	59, 151
Bbv12I	GWGCWC	2 cut(s)	151, 356
BbvI	GCAGC	2 cut(s)	153, 224
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	162, 289
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	133, 697
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	167, 213
BlsI	GCNGC	2 cut(s)	168, 214
Bme1390I	CCNGG	2 cut(s)	162, 289
BmiI	GGNNCC	3 cut(s)	286, 387, 500
BmrFI	CCNGG	2 cut(s)	162, 289
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	2 cut(s)	89, 568
BmuI	ACTGGG	1 cut(s)	603
BsaJI	CCNNGG	4 cut(s)	59, 161, 344, 389
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	598, 651
BseBI	CCWGG	2 cut(s)	162, 289
BseDI	CCNNGG	4 cut(s)	59, 161, 344, 389
BseGI	GGATG	2 cut(s)	25, 354
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	161, 402, 708
BseNI	ACTGG	2 cut(s)	598, 651
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	153, 224
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	151, 356
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	133, 697
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	46
Bsp1286I	GDGCHC	3 cut(s)	59, 151, 356
Bsp143I	GATC	3 cut(s)	295, 439, 649
Bsp19I	CCATGG	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	162, 403, 707
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	286, 387, 500
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	598, 651
BssECI	CCNNGG	4 cut(s)	59, 161, 344, 389
BssMI	GATC	3 cut(s)	295, 439, 649
BssT1I	CCWWGG	2 cut(s)	59, 389
Bst2UI	CCWGG	2 cut(s)	162, 289
Bst4CI	ACNGT	3 cut(s)	121, 435, 602
Bst6I	CTCTTC	2 cut(s)	99, 392
BstC8I	GCNNGC	2 cut(s)	274, 278
BstDEI	CTNAG	4 cut(s)	45, 170, 411, 694
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	25, 354
BstKTI	GATC	3 cut(s)	298, 442, 652
BstMAI	GTCTC	2 cut(s)	133, 697
BstMBI	GATC	3 cut(s)	295, 439, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	2 cut(s)	162, 289
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	160, 287
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	153, 224
BstX2I	RGATCY	2 cut(s)	295, 649
BstYI	RGATCY	2 cut(s)	295, 649
BsuI	GTATCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	25, 354
BtsIMutI	CAGTG	2 cut(s)	152, 591
Cac8I	GCNNGC	2 cut(s)	274, 278
CciI	TCATGA	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	616, 711
CviAII	CATG	5 cut(s)	15, 60, 193, 277, 484
CviJI	RGCY	7 cut(s)	57, 149, 166, 287, 459, 698, 707
CviKI_1	RGCY	7 cut(s)	57, 149, 166, 287, 459, 698, 707
CviQI	GTAC	2 cut(s)	616, 711
DdeI	CTNAG	4 cut(s)	45, 170, 411, 694
DpnI	GATC	3 cut(s)	297, 441, 651
DpnII	GATC	3 cut(s)	295, 439, 649
Eam1104I	CTCTTC	2 cut(s)	99, 392
EarI	CTCTTC	2 cut(s)	99, 392
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	59, 389
Eco24I	GRGCYC	2 cut(s)	59, 151
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	188, 217
EcoRII	CCWGG	2 cut(s)	160, 287
EcoT14I	CCWWGG	2 cut(s)	59, 389
EcoT38I	GRGCYC	2 cut(s)	59, 151
ErhI	CCWWGG	2 cut(s)	59, 389
FaeI	CATG	5 cut(s)	18, 63, 196, 280, 487
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	5 cut(s)	14, 59, 192, 276, 483
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	167, 213
FokI	GGATG	2 cut(s)	32, 361
FriOI	GRGCYC	2 cut(s)	59, 151
Fsp4HI	GCNGC	2 cut(s)	167, 213
GluI	GCNGC	2 cut(s)	167, 213
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	5 cut(s)	18, 63, 196, 280, 487
HincII	GTYRAC	2 cut(s)	70, 408
HindII	GTYRAC	2 cut(s)	70, 408
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	141, 157, 690
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	64, 441
Hpy166II	GTNNAC	5 cut(s)	70, 354, 408, 431, 470
Hpy188I	TCNGA	5 cut(s)	146, 348, 439, 555, 636
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	5 cut(s)	70, 354, 408, 431, 470
HpyAV	CCTTC	2 cut(s)	99, 117
HpyCH4III	ACNGT	3 cut(s)	121, 435, 602
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	6 cut(s)	37, 80, 280, 354, 510, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	4 cut(s)	45, 170, 411, 694
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	18, 63, 196, 280, 487
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	295, 439, 649
LmnI	GCTCC	3 cut(s)	154, 209, 284
Lsp1109I	GCAGC	2 cut(s)	153, 224
LweI	GCATC	2 cut(s)	89, 568
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	297, 441, 651
MboI	GATC	3 cut(s)	295, 439, 649
MboII	GAAGA	4 cut(s)	86, 197, 409, 540
MflI	RGATCY	2 cut(s)	295, 649
MhlI	GDGCHC	3 cut(s)	59, 151, 356
MluCI	AATT	6 cut(s)	188, 217, 233, 337, 361, 443
MlyI	GAGTC	2 cut(s)	135, 699
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	5 cut(s)	42, 175, 354, 393, 563
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	162, 289
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	162, 289
MwoI	GCNNNNNNNGC	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	295, 439, 649
NlaIII	CATG	5 cut(s)	18, 63, 196, 280, 487
NlaIV	GGNNCC	3 cut(s)	286, 387, 500
NspI	RCATGY	1 cut(s)	280
PaeI	GCATGC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	192
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	168, 214
PleI	GAGTC	2 cut(s)	135, 698
PpsI	GAGTC	2 cut(s)	135, 698
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	160, 287
PspGI	CCWGG	2 cut(s)	160, 287
PspN4I	GGNNCC	3 cut(s)	286, 387, 500
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	295, 649
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	617, 712
RsaNI	GTAC	2 cut(s)	616, 711
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	167, 213
Sau3AI	GATC	3 cut(s)	295, 439, 649
SchI	GAGTC	2 cut(s)	135, 699
ScrFI	CCNGG	2 cut(s)	162, 289
SduI	GDGCHC	3 cut(s)	59, 151, 356
SfaNI	GCATC	2 cut(s)	89, 568
SfcI	CTRYAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	6 cut(s)	188, 217, 233, 337, 361, 443
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	160, 287
StyI	CCWWGG	2 cut(s)	59, 389
TaaI	ACNGT	3 cut(s)	121, 435, 602
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	688
TasI	AATT	6 cut(s)	188, 217, 233, 337, 361, 443
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	159, 598
TseI	GCWGC	2 cut(s)	166, 212
TspDTI	ATGAA	6 cut(s)	36, 86, 104, 181, 348, 636
TspRI	CASTG	2 cut(s)	159, 598
VneI	GTGCAC	1 cut(s)	352
XapI	RAATTY	3 cut(s)	188, 217, 337
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.