Rmu_sc0001921.1_g000034

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
Physical Location & Seq
Reverse (-)
184147 .. 186244
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001921.1_g000034.1.cds

Sequence Viewer

Length: 1002 bp
atgcacaatgcacaatgcacaaagtttgaaggttctggaagtgacgggtttaagactaggctttccgcggaggctgtggcagaggctgtggagatggcggcgcaggacatgccgtttgaggtggtgtattatccgaaagctgggtgggctgactttgtggtgaaggcaaaggtgatggagaaggcattgaaggtgttttggacggctgggatgagagtcaagatggccatggagactgatgacttggtttcagggcactctgtcttccgcctttgttccggagaatgggccttggaagggatctccatggcgtatgcttcagatccagttggatgtagttttctgtacatatcaatgattgatttggagatagactttcaacgattaatttcatatttgaacgaatcagttacatgggatgaacctgaagttctgcagaatgctaagagggtgagcccatggcaagttgactttgttgcatcaacaccttctcttcatactgtaccttcgcttcatactgtatatccccccacaaagaggctcagagctccactgaatcctgggctgctgagaaatggagaggaagaattcatgatacctatgaccggagcagctaattcaacaatgggagccaggcaagatctattctgtgtatccaatgtatctcatttgttaaatgaaaattctcctctgatgtgcacctataattcctttggcaacaacaacatggtgccaagattgatgagggtttctactgagtttaacattggtagtccacagtctgatcaattatcacctgatagccagagtagtccacattcctttggcatggaatttgatggtaaccgaaacggtattgatgctgttggttgcactggggacggtggcaatatagggtacaatgaaactgaacttctgaacaaccaactggatctttcttataccaaactgcctgaaaggattgatgttcaagtctcagccgttgaagcttgtactttgtaa

Protein Analysis

333

Amino Acids

36.67

Weight (kDa)

4.72

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AccII CGCG 1 cut(s) 68
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 4 cut(s) 66, 68, 98, 268
AclWI GGATC 3 cut(s) 308, 317, 939
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 3 cut(s) 587, 682, 833
AcuI CTGAAG 2 cut(s) 303, 447
AfaI GTAC 4 cut(s) 347, 504, 899, 994
AfiI CCNNNNNNNGG 5 cut(s) 140, 285, 297, 537, 605
AgsI TTSAA 7 cut(s) 29, 190, 380, 400, 621, 971, 986
AjnI CCWGG 2 cut(s) 559, 632
AluBI AGCT 4 cut(s) 140, 548, 614, 989
AluI AGCT 4 cut(s) 140, 548, 614, 989
Alw21I GWGCWC 2 cut(s) 550, 701
Alw26I GTCTC 2 cut(s) 227, 979
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 3 cut(s) 308, 317, 939
AlwNI CAGNNNCTG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 225, 288
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 565, 611
ApoI RAATTY 3 cut(s) 587, 682, 833
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 386
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 4 cut(s) 172, 184, 463, 786
BaeGI GKGCMC 2 cut(s) 258, 701
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 2 cut(s) 458, 550
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 550, 701
BbvI GCAGC 2 cut(s) 552, 623
BccI CCATC 4 cut(s) 88, 169, 217, 833
BceAI ACGGC 3 cut(s) 97, 219, 965
BciT130I CCWGG 2 cut(s) 561, 634
BciVI GTATCC 1 cut(s) 664
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 227, 979
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 434
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 1 cut(s) 640
BisI GCNGC 3 cut(s) 99, 566, 612
BlsI GCNGC 3 cut(s) 100, 567, 613
Bme1390I CCNGG 2 cut(s) 561, 634
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 631, 732
BmrFI CCNGG 2 cut(s) 561, 634
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 2 cut(s) 488, 850
BmuI ACTGGG 1 cut(s) 885
BpiI GAAGAC 1 cut(s) 256
BsaJI CCNNGG 6 cut(s) 66, 228, 291, 306, 458, 560
BsaWI WCCGGW 2 cut(s) 278, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 285, 297, 537, 605
Bse1I ACTGG 3 cut(s) 326, 880, 933
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 2 cut(s) 561, 634
BseDI CCNNGG 6 cut(s) 66, 228, 291, 306, 458, 560
BseGI GGATG 3 cut(s) 216, 338, 424
BseLI CCNNNNNNNGG 5 cut(s) 140, 285, 297, 537, 605
BseMII CTCAG 4 cut(s) 556, 560, 747, 990
BseNI ACTGG 3 cut(s) 326, 880, 933
BseRI GAGGAG 1 cut(s) 678
BseSI GKGCMC 2 cut(s) 258, 701
BseXI GCAGC 2 cut(s) 552, 623
BseYI CCCAGC 2 cut(s) 140, 206
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 227, 290
BshNI GGYRCC 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 550, 701
BsiSI CCGG 2 cut(s) 279, 606
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 5 cut(s) 140, 285, 297, 537, 605
BsmAI GTCTC 2 cut(s) 227, 979
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 227, 290
Bsp1286I GDGCHC 4 cut(s) 258, 458, 550, 701
Bsp13I TCCGGA 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 5 cut(s) 300, 322, 640, 784, 931
Bsp19I CCATGG 3 cut(s) 228, 306, 458
BspACI CCGC 4 cut(s) 66, 68, 98, 268
BspANI GGCC 2 cut(s) 227, 290
BspCNI CTCAG 4 cut(s) 555, 561, 748, 989
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 631, 732
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 3 cut(s) 308, 317, 939
BspT107I GGYRCC 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 3 cut(s) 326, 880, 933
BssECI CCNNGG 6 cut(s) 66, 228, 291, 306, 458, 560
BssMI GATC 5 cut(s) 300, 322, 640, 784, 931
BssT1I CCWWGG 4 cut(s) 228, 291, 306, 458
Bst2UI CCWGG 2 cut(s) 561, 634
Bst4CI ACNGT 5 cut(s) 502, 520, 780, 854, 884
Bst6I CTCTTC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 345
BstDEI CTNAG 5 cut(s) 444, 542, 569, 756, 976
BstDSI CCRYGG 4 cut(s) 66, 228, 306, 458
BstEII GGTNACC 1 cut(s) 842
BstF5I GGATG 3 cut(s) 216, 338, 424
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 5 cut(s) 303, 325, 643, 787, 934
BstMAI GTCTC 2 cut(s) 227, 979
BstMBI GATC 5 cut(s) 300, 322, 640, 784, 931
BstMWI GCNNNNNNNGC 3 cut(s) 109, 146, 986
BstNI CCWGG 2 cut(s) 561, 634
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 842
BstSCI CCNGG 2 cut(s) 559, 632
BstSFI CTRYAG 1 cut(s) 434
BstSLI GKGCMC 2 cut(s) 258, 701
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 552, 623
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 4 cut(s) 300, 322, 640, 931
BstYI RGATCY 4 cut(s) 300, 322, 640, 931
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 2 cut(s) 227, 290
BtgI CCRYGG 4 cut(s) 66, 228, 306, 458
BtsCI GGATG 3 cut(s) 216, 338, 424
BtsIMutI CAGTG 2 cut(s) 551, 873
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 591
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 288
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 4 cut(s) 346, 503, 898, 993
CviAII CATG 8 cut(s) 109, 229, 307, 414, 459, 592, 727, 829
CviQI GTAC 4 cut(s) 346, 503, 898, 993
DdeI CTNAG 5 cut(s) 444, 542, 569, 756, 976
DpnI GATC 5 cut(s) 302, 324, 642, 786, 933
DpnII GATC 5 cut(s) 300, 322, 640, 784, 931
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 4 cut(s) 228, 291, 306, 458
Eco24I GRGCYC 2 cut(s) 458, 550
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 303, 447
Eco91I GGTNACC 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 842
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 559, 632
EcoT14I CCWWGG 4 cut(s) 228, 291, 306, 458
EcoT38I GRGCYC 2 cut(s) 458, 550
ErhI CCWWGG 4 cut(s) 228, 291, 306, 458
FaeI CATG 8 cut(s) 112, 232, 310, 417, 462, 595, 730, 832
FaqI GGGAC 1 cut(s) 893
FatI CATG 8 cut(s) 108, 228, 306, 413, 458, 591, 726, 828
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 3 cut(s) 99, 566, 612
FokI GGATG 3 cut(s) 223, 345, 431
FriOI GRGCYC 2 cut(s) 458, 550
Fsp4HI GCNGC 3 cut(s) 99, 566, 612
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 102
GluI GCNGC 3 cut(s) 99, 566, 612
GsaI CCCAGC 2 cut(s) 144, 210
HaeIII GGCC 2 cut(s) 227, 290
HapII CCGG 2 cut(s) 279, 606
HhaI GCGC 1 cut(s) 103
Hin1II CATG 8 cut(s) 112, 232, 310, 417, 462, 595, 730, 832
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 987
HinfI GANTC 3 cut(s) 216, 404, 556
HpaII CCGG 2 cut(s) 279, 606
HphI GGTGA 4 cut(s) 172, 184, 463, 786
Hpy166II GTNNAC 4 cut(s) 469, 699, 776, 815
Hpy188I TCNGA 6 cut(s) 135, 322, 545, 693, 784, 918
Hpy188III TCNNGA 4 cut(s) 36, 220, 279, 592
Hpy8I GTNNAC 4 cut(s) 469, 699, 776, 815
HpyAV CCTTC 7 cut(s) 23, 157, 175, 184, 290, 498, 516
HpyCH4III ACNGT 5 cut(s) 502, 520, 780, 854, 884
HpyCH4V TGCA 7 cut(s) 4, 11, 18, 436, 479, 699, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 146, 986
HpyF3I CTNAG 5 cut(s) 444, 542, 569, 756, 976
Hsp92II CATG 8 cut(s) 112, 232, 310, 417, 462, 595, 730, 832
HspAI GCGC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 784
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 5 cut(s) 300, 322, 640, 784, 931
LmnI GCTCC 3 cut(s) 553, 608, 629
Lsp1109I GCAGC 2 cut(s) 552, 623
LweI GCATC 2 cut(s) 488, 850
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 41, 409, 842
MalI GATC 5 cut(s) 302, 324, 642, 786, 933
MboI GATC 5 cut(s) 300, 322, 640, 784, 931
MboII GAAGA 3 cut(s) 256, 485, 596
MflI RGATCY 4 cut(s) 300, 322, 640, 931
MhlI GDGCHC 4 cut(s) 258, 458, 550, 701
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 7 cut(s) 387, 587, 616, 682, 706, 788, 833
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 8 cut(s) 64, 76, 112, 441, 531, 574, 699, 738
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 227
MseI TTAA 4 cut(s) 51, 386, 674, 762
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 279, 606
MspR9I CCNGG 2 cut(s) 561, 634
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 561, 634
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 109, 146, 986
NcoI CCATGG 3 cut(s) 228, 306, 458
NdeII GATC 5 cut(s) 300, 322, 640, 784, 931
NlaIII CATG 8 cut(s) 112, 232, 310, 417, 462, 595, 730, 832
NlaIV GGNNCC 2 cut(s) 631, 732
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 112
PagI TCATGA 1 cut(s) 591
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 404, 556
PkrI GCNGC 3 cut(s) 100, 567, 613
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 559, 632
PspEI GGTNACC 1 cut(s) 842
PspFI CCCAGC 2 cut(s) 140, 206
PspGI CCWGG 2 cut(s) 559, 632
PspN4I GGNNCC 2 cut(s) 631, 732
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 4 cut(s) 300, 322, 640, 931
RsaI GTAC 4 cut(s) 347, 504, 899, 994
RsaNI GTAC 4 cut(s) 346, 503, 898, 993
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 550
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 51, 386, 674, 762
SatI GCNGC 3 cut(s) 99, 566, 612
Sau3AI GATC 5 cut(s) 300, 322, 640, 784, 931
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 561, 634
SduI GDGCHC 4 cut(s) 258, 458, 550, 701
SfaNI GCATC 2 cut(s) 488, 850
SfcI CTRYAG 1 cut(s) 434
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 7 cut(s) 387, 587, 616, 682, 706, 788, 833
SsiI CCGC 4 cut(s) 66, 68, 98, 268
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 559, 632
StyI CCWWGG 4 cut(s) 228, 291, 306, 458
TaaI ACNGT 5 cut(s) 502, 520, 780, 854, 884
TasI AATT 7 cut(s) 387, 587, 616, 682, 706, 788, 833
TatI WGTACW 2 cut(s) 345, 992
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 404, 556
Tru1I TTAA 4 cut(s) 51, 386, 674, 762
Tru9I TTAA 4 cut(s) 51, 386, 674, 762
TscAI CASTG 2 cut(s) 558, 880
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 565, 611
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 7 cut(s) 381, 435, 485, 503, 580, 693, 918
TspRI CASTG 2 cut(s) 558, 880
VneI GTGCAC 1 cut(s) 697
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 3 cut(s) 587, 682, 833
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.