Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 730 |
| AccII | CGCG | 1 cut(s) | 68 |
| AccIII | TCCGGA | 1 cut(s) | 278 |
| AciI | CCGC | 4 cut(s) | 66, 68, 98, 268 |
| AclWI | GGATC | 3 cut(s) | 308, 317, 939 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcsI | RAATTY | 3 cut(s) | 587, 682, 833 |
| AcuI | CTGAAG | 2 cut(s) | 303, 447 |
| AfaI | GTAC | 4 cut(s) | 347, 504, 899, 994 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 140, 285, 297, 537, 605 |
| AgsI | TTSAA | 7 cut(s) | 29, 190, 380, 400, 621, 971, 986 |
| AjnI | CCWGG | 2 cut(s) | 559, 632 |
| AluBI | AGCT | 4 cut(s) | 140, 548, 614, 989 |
| AluI | AGCT | 4 cut(s) | 140, 548, 614, 989 |
| Alw21I | GWGCWC | 2 cut(s) | 550, 701 |
| Alw26I | GTCTC | 2 cut(s) | 227, 979 |
| Alw44I | GTGCAC | 1 cut(s) | 697 |
| AlwI | GGATC | 3 cut(s) | 308, 317, 939 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 86 |
| Aor13HI | TCCGGA | 1 cut(s) | 278 |
| AoxI | GGCC | 2 cut(s) | 225, 288 |
| ApaLI | GTGCAC | 1 cut(s) | 697 |
| ApeKI | GCWGC | 2 cut(s) | 565, 611 |
| ApoI | RAATTY | 3 cut(s) | 587, 682, 833 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 98, 130 |
| AseI | ATTAAT | 1 cut(s) | 386 |
| AspLEI | GCGC | 1 cut(s) | 103 |
| AspS9I | GGNCC | 1 cut(s) | 288 |
| AsuHPI | GGTGA | 4 cut(s) | 172, 184, 463, 786 |
| BaeGI | GKGCMC | 2 cut(s) | 258, 701 |
| BalI | TGGCCA | 1 cut(s) | 227 |
| BanI | GGYRCC | 1 cut(s) | 730 |
| BanII | GRGCYC | 2 cut(s) | 458, 550 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 495, 527 |
| BbsI | GAAGAC | 1 cut(s) | 256 |
| Bbv12I | GWGCWC | 2 cut(s) | 550, 701 |
| BbvI | GCAGC | 2 cut(s) | 552, 623 |
| BccI | CCATC | 4 cut(s) | 88, 169, 217, 833 |
| BceAI | ACGGC | 3 cut(s) | 97, 219, 965 |
| BciT130I | CCWGG | 2 cut(s) | 561, 634 |
| BciVI | GTATCC | 1 cut(s) | 664 |
| BclI | TGATCA | 1 cut(s) | 784 |
| BcoDI | GTCTC | 2 cut(s) | 227, 979 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfmI | CTRYAG | 1 cut(s) | 434 |
| BfuI | GTATCC | 1 cut(s) | 664 |
| BglII | AGATCT | 1 cut(s) | 640 |
| BisI | GCNGC | 3 cut(s) | 99, 566, 612 |
| BlsI | GCNGC | 3 cut(s) | 100, 567, 613 |
| Bme1390I | CCNGG | 2 cut(s) | 561, 634 |
| BmgT120I | GGNCC | 1 cut(s) | 288 |
| BmiI | GGNNCC | 2 cut(s) | 631, 732 |
| BmrFI | CCNGG | 2 cut(s) | 561, 634 |
| BmrI | ACTGGG | 1 cut(s) | 885 |
| BmsI | GCATC | 2 cut(s) | 488, 850 |
| BmuI | ACTGGG | 1 cut(s) | 885 |
| BpiI | GAAGAC | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 6 cut(s) | 66, 228, 291, 306, 458, 560 |
| BsaWI | WCCGGW | 2 cut(s) | 278, 605 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 140, 285, 297, 537, 605 |
| Bse1I | ACTGG | 3 cut(s) | 326, 880, 933 |
| BseAI | TCCGGA | 1 cut(s) | 278 |
| BseBI | CCWGG | 2 cut(s) | 561, 634 |
| BseDI | CCNNGG | 6 cut(s) | 66, 228, 291, 306, 458, 560 |
| BseGI | GGATG | 3 cut(s) | 216, 338, 424 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 140, 285, 297, 537, 605 |
| BseMII | CTCAG | 4 cut(s) | 556, 560, 747, 990 |
| BseNI | ACTGG | 3 cut(s) | 326, 880, 933 |
| BseRI | GAGGAG | 1 cut(s) | 678 |
| BseSI | GKGCMC | 2 cut(s) | 258, 701 |
| BseXI | GCAGC | 2 cut(s) | 552, 623 |
| BseYI | CCCAGC | 2 cut(s) | 140, 206 |
| Bsh1236I | CGCG | 1 cut(s) | 68 |
| BshFI | GGCC | 2 cut(s) | 227, 290 |
| BshNI | GGYRCC | 1 cut(s) | 730 |
| BsiHKAI | GWGCWC | 2 cut(s) | 550, 701 |
| BsiSI | CCGG | 2 cut(s) | 279, 606 |
| BslFI | GGGAC | 1 cut(s) | 893 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 140, 285, 297, 537, 605 |
| BsmAI | GTCTC | 2 cut(s) | 227, 979 |
| BsmFI | GGGAC | 1 cut(s) | 893 |
| BsmI | GAATGC | 1 cut(s) | 445 |
| BsnI | GGCC | 2 cut(s) | 227, 290 |
| Bsp1286I | GDGCHC | 4 cut(s) | 258, 458, 550, 701 |
| Bsp13I | TCCGGA | 1 cut(s) | 278 |
| Bsp1407I | TGTACA | 1 cut(s) | 345 |
| Bsp143I | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| Bsp19I | CCATGG | 3 cut(s) | 228, 306, 458 |
| BspACI | CCGC | 4 cut(s) | 66, 68, 98, 268 |
| BspANI | GGCC | 2 cut(s) | 227, 290 |
| BspCNI | CTCAG | 4 cut(s) | 555, 561, 748, 989 |
| BspEI | TCCGGA | 1 cut(s) | 278 |
| BspFNI | CGCG | 1 cut(s) | 68 |
| BspHI | TCATGA | 1 cut(s) | 591 |
| BspLI | GGNNCC | 2 cut(s) | 631, 732 |
| BspMAI | CTGCAG | 1 cut(s) | 438 |
| BspPI | GGATC | 3 cut(s) | 308, 317, 939 |
| BspT107I | GGYRCC | 1 cut(s) | 730 |
| BsrGI | TGTACA | 1 cut(s) | 345 |
| BsrI | ACTGG | 3 cut(s) | 326, 880, 933 |
| BssECI | CCNNGG | 6 cut(s) | 66, 228, 291, 306, 458, 560 |
| BssMI | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| BssT1I | CCWWGG | 4 cut(s) | 228, 291, 306, 458 |
| Bst2UI | CCWGG | 2 cut(s) | 561, 634 |
| Bst4CI | ACNGT | 5 cut(s) | 502, 520, 780, 854, 884 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 109 |
| BstAUI | TGTACA | 1 cut(s) | 345 |
| BstDEI | CTNAG | 5 cut(s) | 444, 542, 569, 756, 976 |
| BstDSI | CCRYGG | 4 cut(s) | 66, 228, 306, 458 |
| BstEII | GGTNACC | 1 cut(s) | 842 |
| BstF5I | GGATG | 3 cut(s) | 216, 338, 424 |
| BstFNI | CGCG | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 103 |
| BstKTI | GATC | 5 cut(s) | 303, 325, 643, 787, 934 |
| BstMAI | GTCTC | 2 cut(s) | 227, 979 |
| BstMBI | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 109, 146, 986 |
| BstNI | CCWGG | 2 cut(s) | 561, 634 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstPI | GGTNACC | 1 cut(s) | 842 |
| BstSCI | CCNGG | 2 cut(s) | 559, 632 |
| BstSFI | CTRYAG | 1 cut(s) | 434 |
| BstSLI | GKGCMC | 2 cut(s) | 258, 701 |
| BstUI | CGCG | 1 cut(s) | 68 |
| BstV1I | GCAGC | 2 cut(s) | 552, 623 |
| BstV2I | GAAGAC | 1 cut(s) | 256 |
| BstX2I | RGATCY | 4 cut(s) | 300, 322, 640, 931 |
| BstYI | RGATCY | 4 cut(s) | 300, 322, 640, 931 |
| BsuI | GTATCC | 1 cut(s) | 664 |
| BsuRI | GGCC | 2 cut(s) | 227, 290 |
| BtgI | CCRYGG | 4 cut(s) | 66, 228, 306, 458 |
| BtsCI | GGATG | 3 cut(s) | 216, 338, 424 |
| BtsIMutI | CAGTG | 2 cut(s) | 551, 873 |
| CaiI | CAGNNNCTG | 1 cut(s) | 86 |
| CciI | TCATGA | 1 cut(s) | 591 |
| CfoI | GCGC | 1 cut(s) | 103 |
| Cfr13I | GGNCC | 1 cut(s) | 288 |
| Cfr42I | CCGCGG | 1 cut(s) | 69 |
| Csp6I | GTAC | 4 cut(s) | 346, 503, 898, 993 |
| CviAII | CATG | 8 cut(s) | 109, 229, 307, 414, 459, 592, 727, 829 |
| CviQI | GTAC | 4 cut(s) | 346, 503, 898, 993 |
| DdeI | CTNAG | 5 cut(s) | 444, 542, 569, 756, 976 |
| DpnI | GATC | 5 cut(s) | 302, 324, 642, 786, 933 |
| DpnII | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Ecl136II | GAGCTC | 1 cut(s) | 548 |
| Eco130I | CCWWGG | 4 cut(s) | 228, 291, 306, 458 |
| Eco24I | GRGCYC | 2 cut(s) | 458, 550 |
| Eco53kI | GAGCTC | 1 cut(s) | 548 |
| Eco57I | CTGAAG | 2 cut(s) | 303, 447 |
| Eco91I | GGTNACC | 1 cut(s) | 842 |
| EcoICRI | GAGCTC | 1 cut(s) | 548 |
| EcoO65I | GGTNACC | 1 cut(s) | 842 |
| EcoRI | GAATTC | 1 cut(s) | 587 |
| EcoRII | CCWGG | 2 cut(s) | 559, 632 |
| EcoT14I | CCWWGG | 4 cut(s) | 228, 291, 306, 458 |
| EcoT38I | GRGCYC | 2 cut(s) | 458, 550 |
| ErhI | CCWWGG | 4 cut(s) | 228, 291, 306, 458 |
| FaeI | CATG | 8 cut(s) | 112, 232, 310, 417, 462, 595, 730, 832 |
| FaqI | GGGAC | 1 cut(s) | 893 |
| FatI | CATG | 8 cut(s) | 108, 228, 306, 413, 458, 591, 726, 828 |
| FbaI | TGATCA | 1 cut(s) | 784 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 566, 612 |
| FokI | GGATG | 3 cut(s) | 223, 345, 431 |
| FriOI | GRGCYC | 2 cut(s) | 458, 550 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 566, 612 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GlaI | GCGC | 1 cut(s) | 102 |
| GluI | GCNGC | 3 cut(s) | 99, 566, 612 |
| GsaI | CCCAGC | 2 cut(s) | 144, 210 |
| HaeIII | GGCC | 2 cut(s) | 227, 290 |
| HapII | CCGG | 2 cut(s) | 279, 606 |
| HhaI | GCGC | 1 cut(s) | 103 |
| Hin1II | CATG | 8 cut(s) | 112, 232, 310, 417, 462, 595, 730, 832 |
| Hin6I | GCGC | 1 cut(s) | 101 |
| HinP1I | GCGC | 1 cut(s) | 101 |
| HincII | GTYRAC | 1 cut(s) | 469 |
| HindII | GTYRAC | 1 cut(s) | 469 |
| HindIII | AAGCTT | 1 cut(s) | 987 |
| HinfI | GANTC | 3 cut(s) | 216, 404, 556 |
| HpaII | CCGG | 2 cut(s) | 279, 606 |
| HphI | GGTGA | 4 cut(s) | 172, 184, 463, 786 |
| Hpy166II | GTNNAC | 4 cut(s) | 469, 699, 776, 815 |
| Hpy188I | TCNGA | 6 cut(s) | 135, 322, 545, 693, 784, 918 |
| Hpy188III | TCNNGA | 4 cut(s) | 36, 220, 279, 592 |
| Hpy8I | GTNNAC | 4 cut(s) | 469, 699, 776, 815 |
| HpyAV | CCTTC | 7 cut(s) | 23, 157, 175, 184, 290, 498, 516 |
| HpyCH4III | ACNGT | 5 cut(s) | 502, 520, 780, 854, 884 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 11, 18, 436, 479, 699, 873 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 109, 146, 986 |
| HpyF3I | CTNAG | 5 cut(s) | 444, 542, 569, 756, 976 |
| Hsp92II | CATG | 8 cut(s) | 112, 232, 310, 417, 462, 595, 730, 832 |
| HspAI | GCGC | 1 cut(s) | 101 |
| Kpn2I | TCCGGA | 1 cut(s) | 278 |
| Ksp22I | TGATCA | 1 cut(s) | 784 |
| KspI | CCGCGG | 1 cut(s) | 69 |
| Kzo9I | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| LmnI | GCTCC | 3 cut(s) | 553, 608, 629 |
| Lsp1109I | GCAGC | 2 cut(s) | 552, 623 |
| LweI | GCATC | 2 cut(s) | 488, 850 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeIII | GTNAC | 3 cut(s) | 41, 409, 842 |
| MalI | GATC | 5 cut(s) | 302, 324, 642, 786, 933 |
| MboI | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| MboII | GAAGA | 3 cut(s) | 256, 485, 596 |
| MflI | RGATCY | 4 cut(s) | 300, 322, 640, 931 |
| MhlI | GDGCHC | 4 cut(s) | 258, 458, 550, 701 |
| MlsI | TGGCCA | 1 cut(s) | 227 |
| MluCI | AATT | 7 cut(s) | 387, 587, 616, 682, 706, 788, 833 |
| MluNI | TGGCCA | 1 cut(s) | 227 |
| MlyI | GAGTC | 1 cut(s) | 225 |
| MmeI | TCCRAC | 1 cut(s) | 310 |
| MnlI | CCTC | 8 cut(s) | 64, 76, 112, 441, 531, 574, 699, 738 |
| Mox20I | TGGCCA | 1 cut(s) | 227 |
| MroI | TCCGGA | 1 cut(s) | 278 |
| MscI | TGGCCA | 1 cut(s) | 227 |
| MseI | TTAA | 4 cut(s) | 51, 386, 674, 762 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| Msp20I | TGGCCA | 1 cut(s) | 227 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 279, 606 |
| MspR9I | CCNGG | 2 cut(s) | 561, 634 |
| Mva1269I | GAATGC | 1 cut(s) | 445 |
| MvaI | CCWGG | 2 cut(s) | 561, 634 |
| MvnI | CGCG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 109, 146, 986 |
| NcoI | CCATGG | 3 cut(s) | 228, 306, 458 |
| NdeII | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| NlaIII | CATG | 8 cut(s) | 112, 232, 310, 417, 462, 595, 730, 832 |
| NlaIV | GGNNCC | 2 cut(s) | 631, 732 |
| NmuCI | GTSAC | 1 cut(s) | 41 |
| NspI | RCATGY | 1 cut(s) | 112 |
| PagI | TCATGA | 1 cut(s) | 591 |
| PctI | GAATGC | 1 cut(s) | 445 |
| PfeI | GAWTC | 2 cut(s) | 404, 556 |
| PkrI | GCNGC | 3 cut(s) | 100, 567, 613 |
| PleI | GAGTC | 1 cut(s) | 224 |
| PpsI | GAGTC | 1 cut(s) | 224 |
| PshBI | ATTAAT | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 550 |
| Psp6I | CCWGG | 2 cut(s) | 559, 632 |
| PspEI | GGTNACC | 1 cut(s) | 842 |
| PspFI | CCCAGC | 2 cut(s) | 140, 206 |
| PspGI | CCWGG | 2 cut(s) | 559, 632 |
| PspN4I | GGNNCC | 2 cut(s) | 631, 732 |
| PspPI | GGNCC | 1 cut(s) | 288 |
| PstI | CTGCAG | 1 cut(s) | 438 |
| PstNI | CAGNNNCTG | 1 cut(s) | 86 |
| PsuI | RGATCY | 4 cut(s) | 300, 322, 640, 931 |
| RsaI | GTAC | 4 cut(s) | 347, 504, 899, 994 |
| RsaNI | GTAC | 4 cut(s) | 346, 503, 898, 993 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SacI | GAGCTC | 1 cut(s) | 550 |
| SacII | CCGCGG | 1 cut(s) | 69 |
| SaqAI | TTAA | 4 cut(s) | 51, 386, 674, 762 |
| SatI | GCNGC | 3 cut(s) | 99, 566, 612 |
| Sau3AI | GATC | 5 cut(s) | 300, 322, 640, 784, 931 |
| Sau96I | GGNCC | 1 cut(s) | 288 |
| SchI | GAGTC | 1 cut(s) | 225 |
| ScrFI | CCNGG | 2 cut(s) | 561, 634 |
| SduI | GDGCHC | 4 cut(s) | 258, 458, 550, 701 |
| SfaNI | GCATC | 2 cut(s) | 488, 850 |
| SfcI | CTRYAG | 1 cut(s) | 434 |
| Sfr303I | CCGCGG | 1 cut(s) | 69 |
| SgrBI | CCGCGG | 1 cut(s) | 69 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| Sse9I | AATT | 7 cut(s) | 387, 587, 616, 682, 706, 788, 833 |
| SsiI | CCGC | 4 cut(s) | 66, 68, 98, 268 |
| SspMI | CTAG | 1 cut(s) | 57 |
| SstI | GAGCTC | 1 cut(s) | 550 |
| StyD4I | CCNGG | 2 cut(s) | 559, 632 |
| StyI | CCWWGG | 4 cut(s) | 228, 291, 306, 458 |
| TaaI | ACNGT | 5 cut(s) | 502, 520, 780, 854, 884 |
| TasI | AATT | 7 cut(s) | 387, 587, 616, 682, 706, 788, 833 |
| TatI | WGTACW | 2 cut(s) | 345, 992 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 2 cut(s) | 404, 556 |
| Tru1I | TTAA | 4 cut(s) | 51, 386, 674, 762 |
| Tru9I | TTAA | 4 cut(s) | 51, 386, 674, 762 |
| TscAI | CASTG | 2 cut(s) | 558, 880 |
| TseFI | GTSAC | 1 cut(s) | 41 |
| TseI | GCWGC | 2 cut(s) | 565, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 41 |
| TspDTI | ATGAA | 7 cut(s) | 381, 435, 485, 503, 580, 693, 918 |
| TspRI | CASTG | 2 cut(s) | 558, 880 |
| VneI | GTGCAC | 1 cut(s) | 697 |
| VspI | ATTAAT | 1 cut(s) | 386 |
| XapI | RAATTY | 3 cut(s) | 587, 682, 833 |
| XceI | RCATGY | 1 cut(s) | 112 |
| XspI | CTAG | 1 cut(s) | 57 |