Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

28567199 .. 28567690

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGGCAGTACAATGCTTCCTTGTTGAACTATATCATATTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGATTCCAATGCGTCTCATTTGTTTAATGAAAGTACTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGCGCCAAGTCTGAAAAGGGTGTCTACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACAATCCTTTGGCACAGAACTTGATGGGAACCGAAACTGCAACTTGAGAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGGCAGACCATTCCTATCAACGATATTGATGCTGTTGGTTGTACTGGTGATGGTGGCAACGTAGGGTACAATGAAACTGAACTTCTGAACAACCCGCTGGATTCTTATACCAAACTGCTCGAAAGGATTGATGTTCGAGTCCCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

164

Amino Acids

17.75

Weight (kDa)

4.62

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	5 cut(s)	11, 115, 367, 392, 484
AgsI	TTSAA	4 cut(s)	28, 193, 317, 476
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	470, 479
AluI	AGCT	2 cut(s)	470, 479
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	216, 383
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	131
BccI	CCATC	2 cut(s)	263, 368
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	61, 162, 275
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	70, 214
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	61, 162, 275
BspT107I	GGYRCC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	70, 214
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	49, 53
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	73, 217
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	70, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	49, 53
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	5 cut(s)	10, 114, 366, 391, 483
CviAII	CATG	2 cut(s)	52, 157
CviJI	RGCY	4 cut(s)	62, 234, 470, 479
CviKI_1	RGCY	4 cut(s)	62, 234, 470, 479
CviQI	GTAC	5 cut(s)	10, 114, 366, 391, 483
DdeI	CTNAG	1 cut(s)	186
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	2 cut(s)	72, 216
DpnII	GATC	2 cut(s)	70, 214
EcoRII	CCWGG	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	55, 160
FaiI	YATR	6 cut(s)	33, 38, 53, 135, 158, 432
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	51, 156
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	182
FokI	GGATG	1 cut(s)	136
GlaI	GCGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	164
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	55, 160
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	3 cut(s)	83, 425, 462
HphI	GGTGA	2 cut(s)	216, 383
Hpy166II	GTNNAC	4 cut(s)	129, 183, 206, 245
Hpy188I	TCNGA	5 cut(s)	123, 171, 214, 302, 411
Hpy8I	GTNNAC	4 cut(s)	129, 183, 206, 245
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	55, 129, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	55, 160
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	70, 214
LmnI	GCTCC	1 cut(s)	59
LweI	GCATC	1 cut(s)	343
MaeII	ACGT	1 cut(s)	384
MalI	GATC	2 cut(s)	72, 216
MboI	GATC	2 cut(s)	70, 214
MboII	GAAGA	1 cut(s)	315
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	136, 218
Mly113I	GGCGCC	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	421, 470
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	476
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	2 cut(s)	70, 214
NlaIII	CATG	2 cut(s)	55, 160
NlaIV	GGNNCC	3 cut(s)	61, 162, 275
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	83, 425
PleI	GAGTC	1 cut(s)	470
PluTI	GGCGCC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	61, 162, 275
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	5 cut(s)	11, 115, 367, 392, 484
RsaNI	GTAC	5 cut(s)	10, 114, 366, 391, 483
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	70, 214
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	134, 300, 387, 472, 481
SfaNI	GCATC	1 cut(s)	343
SfoI	GGCGCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	136, 218
SsiI	CCGC	1 cut(s)	419
SspDI	GGCGCC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	444, 460
TasI	AATT	2 cut(s)	136, 218
TatI	WGTACW	4 cut(s)	9, 113, 365, 482
TfiI	GAWTC	2 cut(s)	83, 425
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	123, 411
VneI	GTGCAC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	307
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.