Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

68900176 .. 68901696

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG510000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGTGGAAGGGATCCCCTTGGCGTATGCTTCAGGTTATATGGGATGAACCTGAAGTTCTGCAGAATGCTGAGAGGGTGAGCCCTTGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATGACTGGAGCAGCTAATTCAACAATGGGGCAATTCAATGTTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGTGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGACAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAATTGCAACTCGCCAAAGCTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATGTAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGTAAGGATTGATGTTCGAGTCTCAACTGTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

257

Amino Acids

28.54

Weight (kDa)

5.38

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	12 - 47	8.7e-12	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	3 cut(s)	45, 58, 720
AcsI	RAATTY	2 cut(s)	251, 400
AcuI	CTGAAG	2 cut(s)	53, 111
AfaI	GTAC	2 cut(s)	168, 680
AfiI	CCNNNNNNNGG	3 cut(s)	47, 269, 587
AgsI	TTSAA	9 cut(s)	285, 301, 316, 460, 481, 605, 626, 632, 767
AjnI	CCWGG	2 cut(s)	223, 350
AluBI	AGCT	4 cut(s)	212, 278, 586, 770
AluI	AGCT	4 cut(s)	212, 278, 586, 770
Alw21I	GWGCWC	2 cut(s)	214, 419
Alw26I	GTCTC	2 cut(s)	196, 760
Alw44I	GTGCAC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	45, 58, 720
ApaLI	GTGCAC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	229, 275
ApoI	RAATTY	2 cut(s)	251, 400
Asp700I	GAANNNNTTC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	127, 504
BaeGI	GKGCMC	2 cut(s)	20, 419
BamHI	GGATCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	122, 214
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	214, 419
BbvI	GCAGC	2 cut(s)	216, 287
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	225, 352
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	196, 760
BfmI	CTRYAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	382
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	2 cut(s)	230, 276
BlsI	GCNGC	2 cut(s)	231, 277
Bme1390I	CCNGG	2 cut(s)	225, 352
BmiI	GGNNCC	4 cut(s)	52, 349, 450, 563
BmrFI	CCNGG	2 cut(s)	225, 352
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	152, 631
BmuI	ACTGGG	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	6 cut(s)	41, 56, 122, 224, 407, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 269, 587
Bse1I	ACTGG	3 cut(s)	274, 661, 714
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	225, 352
BseDI	CCNNGG	6 cut(s)	41, 56, 122, 224, 407, 452
BseGI	GGATG	2 cut(s)	88, 417
BseLI	CCNNNNNNNGG	3 cut(s)	47, 269, 587
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	4 cut(s)	99, 220, 224, 465
BseNI	ACTGG	3 cut(s)	274, 661, 714
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	2 cut(s)	20, 419
BseXI	GCAGC	2 cut(s)	216, 287
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	214, 419
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	47, 269, 587
BsmAI	GTCTC	2 cut(s)	196, 760
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	109
Bsp1286I	GDGCHC	4 cut(s)	20, 122, 214, 419
Bsp143I	GATC	4 cut(s)	50, 358, 502, 712
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	4 cut(s)	100, 219, 225, 466
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	52, 349, 450, 563
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	3 cut(s)	45, 58, 720
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	676
BsrI	ACTGG	3 cut(s)	274, 661, 714
BssECI	CCNNGG	6 cut(s)	41, 56, 122, 224, 407, 452
BssMI	GATC	4 cut(s)	50, 358, 502, 712
BssT1I	CCWWGG	3 cut(s)	56, 122, 452
Bst2UI	CCWGG	2 cut(s)	225, 352
Bst4CI	ACNGT	5 cut(s)	166, 184, 498, 665, 763
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	337, 341
BstDEI	CTNAG	4 cut(s)	108, 206, 233, 474
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	88, 417
BstKTI	GATC	4 cut(s)	53, 361, 505, 715
BstMAI	GTCTC	2 cut(s)	196, 760
BstMBI	GATC	4 cut(s)	50, 358, 502, 712
BstNI	CCWGG	2 cut(s)	225, 352
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	223, 350
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	2 cut(s)	20, 419
BstV1I	GCAGC	2 cut(s)	216, 287
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	3 cut(s)	50, 358, 712
BstYI	RGATCY	3 cut(s)	50, 358, 712
BsuI	GTATCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	88, 417
BtsIMutI	CAGTG	2 cut(s)	215, 654
Cac8I	GCNNGC	2 cut(s)	337, 341
CciI	TCATGA	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	167, 679
CviAII	CATG	4 cut(s)	256, 340, 445, 547
CviJI	RGCY	7 cut(s)	120, 212, 229, 278, 350, 586, 770
CviKI_1	RGCY	7 cut(s)	120, 212, 229, 278, 350, 586, 770
CviQI	GTAC	2 cut(s)	167, 679
DdeI	CTNAG	4 cut(s)	108, 206, 233, 474
DpnI	GATC	4 cut(s)	52, 360, 504, 714
DpnII	GATC	4 cut(s)	50, 358, 502, 712
DrdI	GACNNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	3 cut(s)	56, 122, 452
Eco24I	GRGCYC	2 cut(s)	122, 214
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	53, 111
EcoICRI	GAGCTC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	223, 350
EcoT14I	CCWWGG	3 cut(s)	56, 122, 452
EcoT38I	GRGCYC	2 cut(s)	122, 214
ErhI	CCWWGG	3 cut(s)	56, 122, 452
FaeI	CATG	4 cut(s)	259, 343, 448, 550
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	4 cut(s)	255, 339, 444, 546
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	230, 276
FokI	GGATG	2 cut(s)	95, 424
FriOI	GRGCYC	2 cut(s)	122, 214
Fsp4HI	GCNGC	2 cut(s)	230, 276
GluI	GCNGC	2 cut(s)	230, 276
GsuI	CTGGAG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	259, 343, 448, 550
HincII	GTYRAC	2 cut(s)	133, 471
HindII	GTYRAC	2 cut(s)	133, 471
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	3 cut(s)	204, 220, 753
HphI	GGTGA	2 cut(s)	127, 504
Hpy166II	GTNNAC	5 cut(s)	133, 417, 471, 494, 533
Hpy188I	TCNGA	6 cut(s)	209, 411, 502, 590, 618, 699
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	5 cut(s)	133, 417, 471, 494, 533
HpyAV	CCTTC	4 cut(s)	40, 162, 180, 626
HpyCH4III	ACNGT	5 cut(s)	166, 184, 498, 665, 763
HpyCH4V	TGCA	6 cut(s)	100, 143, 343, 417, 573, 654
HpyF3I	CTNAG	4 cut(s)	108, 206, 233, 474
Hsp92II	CATG	4 cut(s)	259, 343, 448, 550
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	50, 358, 502, 712
LmnI	GCTCC	3 cut(s)	217, 272, 347
Lsp1109I	GCAGC	2 cut(s)	216, 287
LweI	GCATC	2 cut(s)	152, 631
MalI	GATC	4 cut(s)	52, 360, 504, 714
MboI	GATC	4 cut(s)	50, 358, 502, 712
MboII	GAAGA	4 cut(s)	18, 149, 260, 603
MflI	RGATCY	3 cut(s)	50, 358, 712
MhlI	GDGCHC	4 cut(s)	20, 122, 214, 419
MluCI	AATT	7 cut(s)	251, 280, 296, 400, 424, 506, 568
MlyI	GAGTC	2 cut(s)	198, 762
MnlI	CCTC	3 cut(s)	105, 238, 417
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	225, 352
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	2 cut(s)	225, 352
NdeII	GATC	4 cut(s)	50, 358, 502, 712
NlaIII	CATG	4 cut(s)	259, 343, 448, 550
NlaIV	GGNNCC	4 cut(s)	52, 349, 450, 563
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	231, 277
PleI	GAGTC	2 cut(s)	198, 761
PpsI	GAGTC	2 cut(s)	198, 761
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	223, 350
PspGI	CCWGG	2 cut(s)	223, 350
PspN4I	GGNNCC	4 cut(s)	52, 349, 450, 563
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	3 cut(s)	50, 358, 712
RsaI	GTAC	2 cut(s)	168, 680
RsaNI	GTAC	2 cut(s)	167, 679
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	2 cut(s)	230, 276
Sau3AI	GATC	4 cut(s)	50, 358, 502, 712
SchI	GAGTC	2 cut(s)	198, 762
ScrFI	CCNGG	2 cut(s)	225, 352
SduI	GDGCHC	4 cut(s)	20, 122, 214, 419
SfaNI	GCATC	2 cut(s)	152, 631
SfcI	CTRYAG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	7 cut(s)	251, 280, 296, 400, 424, 506, 568
SsiI	CCGC	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	223, 350
StyI	CCWWGG	3 cut(s)	56, 122, 452
TaaI	ACNGT	5 cut(s)	166, 184, 498, 665, 763
TaqI	TCGA	1 cut(s)	751
TasI	AATT	7 cut(s)	251, 280, 296, 400, 424, 506, 568
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	222, 661
TseI	GCWGC	2 cut(s)	229, 275
TspDTI	ATGAA	6 cut(s)	99, 149, 167, 244, 411, 699
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	222, 661
VneI	GTGCAC	1 cut(s)	415
XapI	RAATTY	2 cut(s)	251, 400
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.