Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

68148246 .. 68160393

Gene Structure 12148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGACGAAACAGGATTGGGATTGTAACAGGTTGTGTAGGTATGATGCTCCAAACTTGAGGTATGAAGAAAATACAAAATATTACGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGAGGTTCCGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGCGACTTCCGCCACATCTACCGCGGAACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCTTCGCCGGCGACTCCGTGGTGTTTATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGACCGTGAGGGCGAGCGCCGGCGGCGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAAGTGACGAGTTTAAGACTAAGCTTTCGGCGGCGGCTGTGGCGGAGGCTGCGGAGATGGCGGCGCAGGACATGGCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCGGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACGTGGGATGAACCTGAAGTTCTGCAAAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCACTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCAGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGAGGGTGTCTACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCGCATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCGACAAAGGTTGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGTGCGGTATTATCAGTTAAACTATAGTGAACTTGGGATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

449

Amino Acids

50.2

Weight (kDa)

7.11

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 123	4.7e-16	B3 DNA binding domain
BRWD_AD	PF25313	155 - 270	1.2e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	188 - 271	6.3e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	390
Acc36I	ACCTGC	2 cut(s)	204, 390
AccB1I	GGYRCC	1 cut(s)	1120
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	1142
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	700
AclWI	GGATC	2 cut(s)	717, 730
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	923, 1072
AcuI	CTGAAG	3 cut(s)	443, 725, 783
AfaI	GTAC	2 cut(s)	350, 840
AfiI	CCNNNNNNNGG	6 cut(s)	267, 339, 548, 707, 719, 941
AgsI	TTSAA	9 cut(s)	598, 957, 973, 988, 1132, 1153, 1277, 1298, 1304
AjnI	CCWGG	4 cut(s)	156, 656, 895, 1022
AluBI	AGCT	6 cut(s)	330, 408, 469, 548, 884, 950
AluI	AGCT	6 cut(s)	330, 408, 469, 548, 884, 950
Alw21I	GWGCWC	4 cut(s)	332, 410, 886, 1091
Alw26I	GTCTC	2 cut(s)	635, 868
Alw44I	GTGCAC	1 cut(s)	1087
AlwI	GGATC	2 cut(s)	717, 730
Ama87I	CYCGRG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	4 cut(s)	555, 633, 690, 710
ApaLI	GTGCAC	1 cut(s)	1087
ApeKI	GCWGC	3 cut(s)	494, 901, 947
ApoI	RAATTY	2 cut(s)	923, 1072
ArsI	GACNNNNNNTTYG	4 cut(s)	454, 486, 506, 538
Asp700I	GAANNNNTTC	1 cut(s)	1267
AspLEI	GCGC	2 cut(s)	383, 511
AspS9I	GGNCC	4 cut(s)	172, 366, 555, 710
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	5 cut(s)	181, 250, 580, 799, 1176
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	172, 366
BaeGI	GKGCMC	2 cut(s)	680, 1091
BalI	TGGCCA	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	1120
BanII	GRGCYC	4 cut(s)	332, 410, 794, 886
BarI	GAAGNNNNNNTAC	2 cut(s)	831, 863
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	4 cut(s)	332, 410, 886, 1091
BbvI	GCAGC	3 cut(s)	481, 888, 959
BccI	CCATC	3 cut(s)	496, 625, 1223
BceAI	ACGGC	2 cut(s)	217, 627
BciT130I	CCWGG	4 cut(s)	158, 658, 897, 1024
BciVI	GTATCC	1 cut(s)	1054
BclI	TGATCA	1 cut(s)	1174
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	635, 868
BfmI	CTRYAG	1 cut(s)	1327
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	2 cut(s)	204, 390
BfuI	GTATCC	1 cut(s)	1054
BglII	AGATCT	1 cut(s)	1030
BlpI	GCTNAGC	1 cut(s)	162
Bme1390I	CCNGG	5 cut(s)	158, 244, 658, 897, 1024
Bme18I	GGWCC	2 cut(s)	172, 366
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	172, 366, 555, 710
BmiI	GGNNCC	5 cut(s)	122, 724, 1021, 1122, 1235
BmrFI	CCNGG	5 cut(s)	158, 244, 658, 897, 1024
BmsI	GCATC	4 cut(s)	34, 76, 282, 824
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	3 cut(s)	289, 316, 640
Bpu1102I	GCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	750
BsaWI	WCCGGW	2 cut(s)	700, 941
Bsc4I	CCNNNNNNNGG	6 cut(s)	267, 339, 548, 707, 719, 941
Bse118I	RCCGGY	4 cut(s)	169, 263, 302, 383
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	4 cut(s)	158, 658, 897, 1024
BseGI	GGATG	4 cut(s)	624, 666, 760, 1347
BseLI	CCNNNNNNNGG	6 cut(s)	267, 339, 548, 707, 719, 941
BseMII	CTCAG	4 cut(s)	153, 896, 1094, 1137
BseRI	GAGGAG	4 cut(s)	340, 446, 643, 1068
BseSI	GKGCMC	2 cut(s)	680, 1091
BseXI	GCAGC	3 cut(s)	481, 888, 959
BseYI	CCCAGC	2 cut(s)	548, 614
BsgI	GTGCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	557, 635, 692, 712
BshNI	GGYRCC	1 cut(s)	1120
BsiHKAI	GWGCWC	4 cut(s)	332, 410, 886, 1091
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	7 cut(s)	170, 244, 264, 303, 384, 701, 942
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	6 cut(s)	267, 339, 548, 707, 719, 941
BsmAI	GTCTC	2 cut(s)	635, 868
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	1207
BsnI	GGCC	4 cut(s)	557, 635, 692, 712
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	6 cut(s)	332, 410, 680, 794, 886, 1091
Bsp13I	TCCGGA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	722, 1030, 1174
Bsp1720I	GCTNAGC	1 cut(s)	162
Bsp19I	CCATGG	3 cut(s)	636, 728, 794
BspANI	GGCC	4 cut(s)	557, 635, 692, 712
BspCNI	CTCAG	4 cut(s)	154, 897, 1093, 1138
BspEI	TCCGGA	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	5 cut(s)	122, 724, 1021, 1122, 1235
BspMI	ACCTGC	2 cut(s)	204, 390
BspPI	GGATC	2 cut(s)	717, 730
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	1120
BsrFI	RCCGGY	4 cut(s)	169, 263, 302, 383
BssAI	RCCGGY	4 cut(s)	169, 263, 302, 383
BssMI	GATC	3 cut(s)	722, 1030, 1174
BssT1I	CCWWGG	5 cut(s)	636, 713, 728, 794, 1124
Bst2UI	CCWGG	4 cut(s)	158, 658, 897, 1024
Bst4CI	ACNGT	4 cut(s)	370, 838, 856, 1170
Bst6I	CTCTTC	3 cut(s)	302, 834, 1127
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	5 cut(s)	304, 379, 385, 1009, 1013
BstDEI	CTNAG	6 cut(s)	162, 465, 780, 905, 1080, 1146
BstDSI	CCRYGG	5 cut(s)	232, 312, 636, 728, 794
BstF5I	GGATG	4 cut(s)	624, 666, 760, 1347
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 511
BstKTI	GATC	3 cut(s)	725, 1033, 1177
BstMAI	GTCTC	2 cut(s)	635, 868
BstMBI	GATC	3 cut(s)	722, 1030, 1174
BstNI	CCWGG	4 cut(s)	158, 658, 897, 1024
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	5 cut(s)	156, 242, 656, 895, 1022
BstSFI	CTRYAG	1 cut(s)	1327
BstSLI	GKGCMC	2 cut(s)	680, 1091
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	481, 888, 959
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	2 cut(s)	722, 1030
BstYI	RGATCY	2 cut(s)	722, 1030
BsuI	GTATCC	1 cut(s)	1054
BsuRI	GGCC	4 cut(s)	557, 635, 692, 712
BtgI	CCRYGG	5 cut(s)	232, 312, 636, 728, 794
BtsCI	GGATG	4 cut(s)	624, 666, 760, 1347
BtsIMutI	CAGTG	1 cut(s)	887
BveI	ACCTGC	2 cut(s)	204, 390
Cac8I	GCNNGC	5 cut(s)	304, 379, 385, 1009, 1013
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	2 cut(s)	383, 511
Cfr10I	RCCGGY	4 cut(s)	169, 263, 302, 383
Cfr13I	GGNCC	4 cut(s)	172, 366, 555, 710
Cfr42I	CCGCGG	1 cut(s)	235
CpoI	CGGWCCG	1 cut(s)	366
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	349, 839
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CspI	CGGWCCG	1 cut(s)	366
CviAII	CATG	9 cut(s)	517, 637, 729, 795, 928, 1012, 1117, 1219, 1347
CviQI	GTAC	2 cut(s)	349, 839
DdeI	CTNAG	6 cut(s)	162, 465, 780, 905, 1080, 1146
DpnI	GATC	3 cut(s)	724, 1032, 1176
DpnII	GATC	3 cut(s)	722, 1030, 1174
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	302, 834, 1127
EarI	CTCTTC	3 cut(s)	302, 834, 1127
EciI	GGCGGA	3 cut(s)	209, 379, 503
Ecl136II	GAGCTC	3 cut(s)	330, 408, 884
Eco130I	CCWWGG	5 cut(s)	636, 713, 728, 794, 1124
Eco24I	GRGCYC	4 cut(s)	332, 410, 794, 886
Eco47I	GGWCC	2 cut(s)	172, 366
Eco53kI	GAGCTC	3 cut(s)	330, 408, 884
Eco57I	CTGAAG	3 cut(s)	443, 725, 783
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	3 cut(s)	330, 408, 884
EcoRI	GAATTC	1 cut(s)	923
EcoRII	CCWGG	4 cut(s)	156, 656, 895, 1022
EcoT14I	CCWWGG	5 cut(s)	636, 713, 728, 794, 1124
EcoT38I	GRGCYC	4 cut(s)	332, 410, 794, 886
ErhI	CCWWGG	5 cut(s)	636, 713, 728, 794, 1124
FaeI	CATG	9 cut(s)	520, 640, 732, 798, 931, 1015, 1120, 1222, 1350
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 1255, 1287
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	9 cut(s)	516, 636, 728, 794, 927, 1011, 1116, 1218, 1346
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	1174
FblI	GTMKAC	1 cut(s)	1142
FokI	GGATG	3 cut(s)	631, 673, 767
FriOI	GRGCYC	4 cut(s)	332, 410, 794, 886
GlaI	GCGC	2 cut(s)	382, 510
GsaI	CCCAGC	2 cut(s)	552, 618
GsuI	CTGGAG	3 cut(s)	289, 316, 640
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	557, 635, 692, 712
HapII	CCGG	7 cut(s)	170, 244, 264, 303, 384, 701, 942
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	383, 511
Hin1II	CATG	9 cut(s)	520, 640, 732, 798, 931, 1015, 1120, 1222, 1350
Hin6I	GCGC	2 cut(s)	381, 509
HinP1I	GCGC	2 cut(s)	381, 509
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	6 cut(s)	131, 308, 624, 650, 876, 892
HpaII	CCGG	7 cut(s)	170, 244, 264, 303, 384, 701, 942
HphI	GGTGA	5 cut(s)	181, 250, 580, 799, 1176
Hpy166II	GTNNAC	5 cut(s)	805, 1089, 1143, 1166, 1334
Hpy188I	TCNGA	6 cut(s)	430, 543, 881, 1083, 1174, 1290
Hpy188III	TCNNGA	7 cut(s)	115, 175, 333, 444, 628, 701, 928
Hpy8I	GTNNAC	5 cut(s)	805, 1089, 1143, 1166, 1334
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	7 cut(s)	431, 565, 583, 592, 712, 834, 852
HpyCH4III	ACNGT	4 cut(s)	370, 838, 856, 1170
HpyCH4IV	ACGT	2 cut(s)	351, 749
HpyCH4V	TGCA	6 cut(s)	199, 772, 815, 1015, 1089, 1245
HpyF3I	CTNAG	6 cut(s)	162, 465, 780, 905, 1080, 1146
HpySE526I	ACGT	2 cut(s)	351, 749
Hsp92II	CATG	9 cut(s)	520, 640, 732, 798, 931, 1015, 1120, 1222, 1350
HspAI	GCGC	2 cut(s)	381, 509
Kpn2I	TCCGGA	1 cut(s)	700
KroI	GCCGGC	2 cut(s)	302, 383
KroNI	GCCGGC	2 cut(s)	304, 385
Ksp22I	TGATCA	1 cut(s)	1174
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	722, 1030, 1174
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	8 cut(s)	52, 270, 327, 335, 405, 889, 944, 1019
Lsp1109I	GCAGC	3 cut(s)	481, 888, 959
LweI	GCATC	4 cut(s)	34, 76, 282, 824
MaeII	ACGT	2 cut(s)	351, 749
MaeIII	GTNAC	4 cut(s)	23, 187, 449, 745
MalI	GATC	3 cut(s)	724, 1032, 1176
MboI	GATC	3 cut(s)	722, 1030, 1174
MboII	GAAGA	7 cut(s)	77, 289, 678, 821, 932, 1144, 1275
MflI	RGATCY	2 cut(s)	722, 1030
MhlI	GDGCHC	6 cut(s)	332, 410, 680, 794, 886, 1091
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	6 cut(s)	923, 952, 968, 1072, 1096, 1178
MluNI	TGGCCA	1 cut(s)	635
MlyI	GAGTC	5 cut(s)	125, 302, 633, 644, 870
MmeI	TCCRAC	2 cut(s)	408, 1240
Mox20I	TGGCCA	1 cut(s)	635
MreI	CGCCGGCG	2 cut(s)	302, 383
MroI	TCCGGA	1 cut(s)	700
MroNI	GCCGGC	2 cut(s)	302, 383
MroXI	GAANNNNTTC	1 cut(s)	1267
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	4 cut(s)	150, 459, 1064, 1322
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	7 cut(s)	170, 244, 264, 303, 384, 701, 942
MspR9I	CCNGG	5 cut(s)	158, 244, 658, 897, 1024
Mva1269I	GAATGC	1 cut(s)	1207
MvaI	CCWGG	4 cut(s)	158, 658, 897, 1024
MvnI	CGCG	1 cut(s)	234
NaeI	GCCGGC	2 cut(s)	304, 385
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	3 cut(s)	636, 728, 794
NdeII	GATC	3 cut(s)	722, 1030, 1174
NgoMIV	GCCGGC	2 cut(s)	302, 383
NlaIII	CATG	9 cut(s)	520, 640, 732, 798, 931, 1015, 1120, 1222, 1350
NlaIV	GGNNCC	5 cut(s)	122, 724, 1021, 1122, 1235
NmuCI	GTSAC	2 cut(s)	187, 449
NspI	RCATGY	1 cut(s)	1015
PaeI	GCATGC	1 cut(s)	1015
PagI	TCATGA	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	1207
PdiI	GCCGGC	2 cut(s)	304, 385
PdmI	GAANNNNTTC	1 cut(s)	1267
PfeI	GAWTC	1 cut(s)	892
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	656
PleI	GAGTC	5 cut(s)	125, 302, 632, 644, 870
PpsI	GAGTC	5 cut(s)	125, 302, 632, 644, 870
Ppu21I	YACGTR	1 cut(s)	750
Psp124BI	GAGCTC	3 cut(s)	332, 410, 886
Psp6I	CCWGG	4 cut(s)	156, 656, 895, 1022
PspFI	CCCAGC	2 cut(s)	548, 614
PspGI	CCWGG	4 cut(s)	156, 656, 895, 1022
PspN4I	GGNNCC	5 cut(s)	122, 724, 1021, 1122, 1235
PspPI	GGNCC	4 cut(s)	172, 366, 555, 710
PsuI	RGATCY	2 cut(s)	722, 1030
RsaI	GTAC	2 cut(s)	350, 840
RsaNI	GTAC	2 cut(s)	349, 839
Rsr2I	CGGWCCG	1 cut(s)	366
RsrII	CGGWCCG	1 cut(s)	366
SacI	GAGCTC	3 cut(s)	332, 410, 886
SacII	CCGCGG	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	150, 459, 1064, 1322
Sau3AI	GATC	3 cut(s)	722, 1030, 1174
Sau96I	GGNCC	4 cut(s)	172, 366, 555, 710
SchI	GAGTC	5 cut(s)	125, 302, 633, 644, 870
ScrFI	CCNGG	5 cut(s)	158, 244, 658, 897, 1024
SduI	GDGCHC	6 cut(s)	332, 410, 680, 794, 886, 1091
SfaNI	GCATC	4 cut(s)	34, 76, 282, 824
SfcI	CTRYAG	1 cut(s)	1327
Sfr303I	CCGCGG	1 cut(s)	235
SgrAI	CRCCGGYG	2 cut(s)	302, 383
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	172, 366
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	6 cut(s)	923, 952, 968, 1072, 1096, 1178
SspI	AATATT	1 cut(s)	80
SstI	GAGCTC	3 cut(s)	332, 410, 886
StyD4I	CCNGG	5 cut(s)	156, 242, 656, 895, 1022
StyI	CCWWGG	5 cut(s)	636, 713, 728, 794, 1124
TaaI	ACNGT	4 cut(s)	370, 838, 856, 1170
TaiI	ACGT	2 cut(s)	354, 752
TaqI	TCGA	2 cut(s)	134, 1250
TasI	AATT	6 cut(s)	923, 952, 968, 1072, 1096, 1178
TauI	GCSGC	8 cut(s)	148, 169, 207, 390, 399, 479, 482, 509
TfiI	GAWTC	1 cut(s)	892
Tru1I	TTAA	4 cut(s)	150, 459, 1064, 1322
Tru9I	TTAA	4 cut(s)	150, 459, 1064, 1322
TscAI	CASTG	1 cut(s)	894
TseFI	GTSAC	2 cut(s)	187, 449
TseI	GCWGC	3 cut(s)	494, 901, 947
Tsp45I	GTSAC	2 cut(s)	187, 449
TspDTI	ATGAA	6 cut(s)	78, 771, 821, 839, 916, 1083
TspGWI	ACGGA	3 cut(s)	113, 175, 301
TspRI	CASTG	1 cut(s)	894
Van91I	CCANNNNNTGG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	1087
VpaK11BI	GGWCC	2 cut(s)	172, 366
XapI	RAATTY	2 cut(s)	923, 1072
XceI	RCATGY	1 cut(s)	1015
XmiI	GTMKAC	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.