Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00606

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

20750 .. 23595

Gene Structure 2846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGCCTCCCAATTCTCACCGTCACACTCGCTCTCGTTCTCATTCTCACTCTCACGCGCCTCCGCCGCCGCAGCTCGTCTCCATCGACCCCAAAATCTGGGTTTACTACTTCCCCCAAGGCCACCTCGAACACTCCACCTCCTCCTCCTCCGCTCCGGTTCTTCTCTCCCCTCTCGTCCTCTCCCAGCCCCTCATTCTCTGCCGCATCGCCGCCGTCCAGTTCCTCGCTGATCCCACCACCGACGAGGTCCTCGCCAAGCTCCTCCTCCATCCTGTTCACTCCGGACTCTCCCCTCACCACCGCGAACTCAGCGCCGCCGCCGCGGAGGAGGAGCAGGAGGAGGACGACGACGGCGGCGATAGGGTGGTGTCGTTCGCTAAGATCTTGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGAGGTTTTGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGTGGAACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGATGCTCGTCGCCGGCGACTCCGTGGTGTTTATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGACCGTGAGGGCGAGCGCCGGCGGTGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAACGTTCTGGAGGTGACGGGTTTAAGACGAGGCTTACGGCGGAGGCTGTGGCGGAGGCTGCCGAGATGGCGGCGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGGAGAATGGGCCCTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGGAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAACTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCGCATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCGACAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGTACTGGGGACGGTGGCAATATAGGGTATAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

588

Amino Acids

64.66

Weight (kDa)

6.06

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	125 - 227	1e-22	B3 DNA binding domain
BRWD_AD	PF25313	272 - 374	7.1e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	292 - 375	9.5e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	702
Acc36I	ACCTGC	2 cut(s)	516, 702
AccB1I	GGYRCC	1 cut(s)	1432
AccB7I	CCANNNNNTGG	2 cut(s)	96, 579
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	3 cut(s)	56, 303, 323
AccIII	TCCGGA	2 cut(s)	281, 1012
AclI	AACGTT	1 cut(s)	751
AclWI	GGATC	4 cut(s)	224, 1029, 1042, 1704
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	1 cut(s)	1235
AcuI	CTGAAG	3 cut(s)	755, 1037, 1095
AfaI	GTAC	4 cut(s)	662, 1152, 1639, 1759
AfiI	CCNNNNNNNGG	7 cut(s)	96, 579, 651, 860, 1019, 1031, 1253
AjnI	CCWGG	5 cut(s)	468, 968, 1025, 1207, 1334
AluBI	AGCT	9 cut(s)	73, 259, 642, 720, 860, 1196, 1262, 1745, 1754
AluI	AGCT	9 cut(s)	73, 259, 642, 720, 860, 1196, 1262, 1745, 1754
Alw21I	GWGCWC	4 cut(s)	644, 722, 1198, 1403
Alw26I	GTCTC	4 cut(s)	82, 947, 1180, 1744
Alw44I	GTGCAC	1 cut(s)	1399
AlwI	GGATC	4 cut(s)	224, 1029, 1042, 1704
Ama87I	CYCGRG	1 cut(s)	427
Aor13HI	TCCGGA	2 cut(s)	281, 1012
AoxI	GGCC	4 cut(s)	118, 867, 945, 1022
ApaI	GGGCCC	1 cut(s)	1026
ApaLI	GTGCAC	1 cut(s)	1399
ApeKI	GCWGC	4 cut(s)	70, 806, 1213, 1259
ApoI	RAATTY	1 cut(s)	1235
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
Asp700I	GAANNNNTTC	1 cut(s)	1579
AspLEI	GCGC	4 cut(s)	58, 314, 695, 823
AspS9I	GGNCC	6 cut(s)	247, 484, 678, 867, 1022, 1023
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	9 cut(s)	8, 287, 493, 562, 713, 773, 892, 1111, 1488
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	247, 484, 678
BaeGI	GKGCMC	3 cut(s)	992, 1026, 1403
BalI	TGGCCA	1 cut(s)	947
BamHI	GGATCC	1 cut(s)	1034
BanI	GGYRCC	1 cut(s)	1432
BanII	GRGCYC	5 cut(s)	644, 722, 1026, 1106, 1198
BarI	GAAGNNNNNNTAC	2 cut(s)	1143, 1175
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	4 cut(s)	644, 722, 1198, 1403
BbvCI	CCTCAGC	1 cut(s)	1217
BbvI	GCAGC	4 cut(s)	82, 793, 1200, 1271
BccI	CCATC	5 cut(s)	89, 276, 808, 937, 1535
BceAI	ACGGC	6 cut(s)	197, 367, 529, 801, 817, 939
BciT130I	CCWGG	5 cut(s)	470, 970, 1027, 1209, 1336
BciVI	GTATCC	1 cut(s)	1366
BclI	TGATCA	1 cut(s)	1486
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	4 cut(s)	82, 947, 1180, 1744
BfmI	CTRYAG	1 cut(s)	1082
BfoI	RGCGCY	2 cut(s)	315, 696
BfuAI	ACCTGC	2 cut(s)	516, 702
BfuI	GTATCC	1 cut(s)	1366
BglI	GCCNNNNNGGC	1 cut(s)	815
BglII	AGATCT	2 cut(s)	381, 1342
BlpI	GCTNAGC	1 cut(s)	474
Bme1390I	CCNGG	6 cut(s)	470, 556, 970, 1027, 1209, 1336
Bme18I	GGWCC	3 cut(s)	247, 484, 678
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	6 cut(s)	247, 484, 678, 867, 1022, 1023
BmiI	GGNNCC	5 cut(s)	1024, 1036, 1333, 1434, 1547
BmrFI	CCNGG	6 cut(s)	470, 556, 970, 1027, 1209, 1336
BmrI	ACTGGG	1 cut(s)	1650
BmsI	GCATC	5 cut(s)	213, 388, 594, 1136, 1615
BmuI	ACTGGG	1 cut(s)	1650
BoxI	GACNNNNGTC	1 cut(s)	1568
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	4 cut(s)	601, 628, 777, 952
Bpu10I	CCTNAGC	1 cut(s)	1217
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	556
BsaWI	WCCGGW	4 cut(s)	154, 281, 1012, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	7 cut(s)	96, 579, 651, 860, 1019, 1031, 1253
Bse118I	RCCGGY	4 cut(s)	481, 575, 614, 695
Bse1I	ACTGG	3 cut(s)	217, 1645, 1698
BseAI	TCCGGA	2 cut(s)	281, 1012
BseBI	CCWGG	5 cut(s)	470, 970, 1027, 1209, 1336
BseGI	GGATG	5 cut(s)	268, 936, 978, 1072, 1401
BseLI	CCNNNNNNNGG	7 cut(s)	96, 579, 651, 860, 1019, 1031, 1253
BseMII	CTCAG	5 cut(s)	322, 465, 1208, 1449, 1755
BseNI	ACTGG	3 cut(s)	217, 1645, 1698
BseSI	GKGCMC	3 cut(s)	992, 1026, 1403
BseXI	GCAGC	4 cut(s)	82, 793, 1200, 1271
BseYI	CCCAGC	3 cut(s)	183, 860, 926
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	3 cut(s)	56, 303, 323
BshFI	GGCC	4 cut(s)	120, 869, 947, 1024
BshNI	GGYRCC	1 cut(s)	1432
BsiHKAI	GWGCWC	4 cut(s)	644, 722, 1198, 1403
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	9 cut(s)	155, 282, 482, 556, 576, 615, 696, 1013, 1254
BslFI	GGGAC	3 cut(s)	410, 539, 1658
BslI	CCNNNNNNNGG	7 cut(s)	96, 579, 651, 860, 1019, 1031, 1253
BsmAI	GTCTC	4 cut(s)	82, 947, 1180, 1744
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	3 cut(s)	410, 539, 1658
BsmI	GAATGC	2 cut(s)	1093, 1519
BsnI	GGCC	4 cut(s)	120, 869, 947, 1024
BsoBI	CYCGRG	1 cut(s)	427
Bsp120I	GGGCCC	1 cut(s)	1022
Bsp1286I	GDGCHC	7 cut(s)	644, 722, 992, 1026, 1106, 1198, 1403
Bsp13I	TCCGGA	2 cut(s)	281, 1012
Bsp143I	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	3 cut(s)	948, 1040, 1106
BspANI	GGCC	4 cut(s)	120, 869, 947, 1024
BspCNI	CTCAG	5 cut(s)	321, 466, 1209, 1450, 1754
BspEI	TCCGGA	2 cut(s)	281, 1012
BspFNI	CGCG	3 cut(s)	56, 303, 323
BspHI	TCATGA	1 cut(s)	1239
BspLI	GGNNCC	5 cut(s)	1024, 1036, 1333, 1434, 1547
BspMAI	CTGCAG	1 cut(s)	1086
BspMI	ACCTGC	2 cut(s)	516, 702
BspPI	GGATC	4 cut(s)	224, 1029, 1042, 1704
BspT107I	GGYRCC	1 cut(s)	1432
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	4 cut(s)	481, 575, 614, 695
BsrI	ACTGG	3 cut(s)	217, 1645, 1698
BssAI	RCCGGY	4 cut(s)	481, 575, 614, 695
BssMI	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
BssT1I	CCWWGG	5 cut(s)	115, 948, 1040, 1106, 1436
Bst2UI	CCWGG	5 cut(s)	470, 970, 1027, 1209, 1336
Bst4CI	ACNGT	7 cut(s)	20, 545, 682, 1150, 1168, 1482, 1649
Bst6I	CTCTTC	2 cut(s)	1146, 1439
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstC8I	GCNNGC	5 cut(s)	616, 691, 697, 1321, 1325
BstDEI	CTNAG	7 cut(s)	308, 378, 474, 1092, 1217, 1458, 1741
BstDSI	CCRYGG	6 cut(s)	321, 544, 624, 948, 1040, 1106
BstF5I	GGATG	5 cut(s)	268, 936, 978, 1072, 1401
BstFNI	CGCG	3 cut(s)	56, 303, 323
BstH2I	RGCGCY	2 cut(s)	315, 696
BstHHI	GCGC	4 cut(s)	58, 314, 695, 823
BstKTI	GATC	6 cut(s)	232, 384, 1037, 1345, 1489, 1699
BstMAI	GTCTC	4 cut(s)	82, 947, 1180, 1744
BstMBI	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
BstNI	CCWGG	5 cut(s)	470, 970, 1027, 1209, 1336
BstNSI	RCATGY	2 cut(s)	832, 1327
BstPAI	GACNNNNGTC	1 cut(s)	1568
BstSCI	CCNGG	6 cut(s)	468, 554, 968, 1025, 1207, 1334
BstSFI	CTRYAG	1 cut(s)	1082
BstSLI	GKGCMC	3 cut(s)	992, 1026, 1403
BstUI	CGCG	3 cut(s)	56, 303, 323
BstV1I	GCAGC	4 cut(s)	82, 793, 1200, 1271
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	4 cut(s)	381, 1034, 1342, 1696
BstYI	RGATCY	4 cut(s)	381, 1034, 1342, 1696
BsuI	GTATCC	1 cut(s)	1366
BsuRI	GGCC	4 cut(s)	120, 869, 947, 1024
BtgI	CCRYGG	6 cut(s)	321, 544, 624, 948, 1040, 1106
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	5 cut(s)	268, 936, 978, 1072, 1401
BtsIMutI	CAGTG	1 cut(s)	1199
BveI	ACCTGC	2 cut(s)	516, 702
Cac8I	GCNNGC	5 cut(s)	616, 691, 697, 1321, 1325
CciI	TCATGA	1 cut(s)	1239
CfoI	GCGC	4 cut(s)	58, 314, 695, 823
Cfr10I	RCCGGY	4 cut(s)	481, 575, 614, 695
Cfr13I	GGNCC	6 cut(s)	247, 484, 678, 867, 1022, 1023
Cfr42I	CCGCGG	1 cut(s)	324
CpoI	CGGWCCG	1 cut(s)	678
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	4 cut(s)	661, 1151, 1638, 1758
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CspI	CGGWCCG	1 cut(s)	678
CviAII	CATG	9 cut(s)	829, 949, 1041, 1062, 1107, 1240, 1324, 1429, 1531
CviQI	GTAC	4 cut(s)	661, 1151, 1638, 1758
DdeI	CTNAG	7 cut(s)	308, 378, 474, 1092, 1217, 1458, 1741
DpnI	GATC	6 cut(s)	231, 383, 1036, 1344, 1488, 1698
DpnII	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	2 cut(s)	1146, 1439
EarI	CTCTTC	2 cut(s)	1146, 1439
EciI	GGCGGA	6 cut(s)	51, 521, 691, 803, 815, 991
Ecl136II	GAGCTC	3 cut(s)	642, 720, 1196
Eco130I	CCWWGG	5 cut(s)	115, 948, 1040, 1106, 1436
Eco24I	GRGCYC	5 cut(s)	644, 722, 1026, 1106, 1198
Eco47I	GGWCC	3 cut(s)	247, 484, 678
Eco53kI	GAGCTC	3 cut(s)	642, 720, 1196
Eco57I	CTGAAG	3 cut(s)	755, 1037, 1095
Eco88I	CYCGRG	1 cut(s)	427
EcoICRI	GAGCTC	3 cut(s)	642, 720, 1196
EcoO109I	RGGNCCY	2 cut(s)	247, 1023
EcoRI	GAATTC	1 cut(s)	1235
EcoRII	CCWGG	5 cut(s)	468, 968, 1025, 1207, 1334
EcoT14I	CCWWGG	5 cut(s)	115, 948, 1040, 1106, 1436
EcoT38I	GRGCYC	5 cut(s)	644, 722, 1026, 1106, 1198
ErhI	CCWWGG	5 cut(s)	115, 948, 1040, 1106, 1436
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	9 cut(s)	832, 952, 1044, 1065, 1110, 1243, 1327, 1432, 1534
FalI	AAGNNNNNCTT	2 cut(s)	1567, 1599
FaqI	GGGAC	3 cut(s)	410, 539, 1658
FatI	CATG	9 cut(s)	828, 948, 1040, 1061, 1106, 1239, 1323, 1428, 1530
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	1486
FokI	GGATG	5 cut(s)	255, 943, 985, 1079, 1408
FriOI	GRGCYC	5 cut(s)	644, 722, 1026, 1106, 1198
GlaI	GCGC	4 cut(s)	57, 313, 694, 822
GsaI	CCCAGC	3 cut(s)	187, 864, 930
GsuI	CTGGAG	4 cut(s)	601, 628, 777, 952
HaeII	RGCGCY	2 cut(s)	315, 696
HaeIII	GGCC	4 cut(s)	120, 869, 947, 1024
HapII	CCGG	9 cut(s)	155, 282, 482, 556, 576, 615, 696, 1013, 1254
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	4 cut(s)	58, 314, 695, 823
Hin1II	CATG	9 cut(s)	832, 952, 1044, 1065, 1110, 1243, 1327, 1432, 1534
Hin6I	GCGC	4 cut(s)	56, 312, 693, 821
HinP1I	GCGC	4 cut(s)	56, 312, 693, 821
HincII	GTYRAC	3 cut(s)	595, 1117, 1455
HindII	GTYRAC	3 cut(s)	595, 1117, 1455
HindIII	AAGCTT	1 cut(s)	1752
HinfI	GANTC	9 cut(s)	285, 388, 443, 620, 936, 962, 1188, 1204, 1737
HpaII	CCGG	9 cut(s)	155, 282, 482, 556, 576, 615, 696, 1013, 1254
HphI	GGTGA	9 cut(s)	8, 287, 493, 562, 713, 773, 892, 1111, 1488
Hpy166II	GTNNAC	7 cut(s)	103, 277, 595, 1117, 1401, 1455, 1478
Hpy188I	TCNGA	9 cut(s)	397, 742, 855, 1193, 1395, 1486, 1574, 1602, 1683
Hpy188III	TCNNGA	9 cut(s)	282, 385, 427, 487, 645, 756, 940, 1013, 1240
Hpy8I	GTNNAC	7 cut(s)	103, 277, 595, 1117, 1401, 1455, 1478
Hpy99I	CGWCG	5 cut(s)	245, 350, 353, 614, 668
HpyAV	CCTTC	8 cut(s)	402, 877, 895, 904, 1024, 1146, 1164, 1610
HpyCH4III	ACNGT	7 cut(s)	20, 545, 682, 1150, 1168, 1482, 1649
HpyCH4IV	ACGT	2 cut(s)	663, 751
HpyCH4V	TGCA	6 cut(s)	511, 1084, 1127, 1327, 1401, 1557
HpyF3I	CTNAG	7 cut(s)	308, 378, 474, 1092, 1217, 1458, 1741
HpySE526I	ACGT	2 cut(s)	663, 751
Hsp92II	CATG	9 cut(s)	832, 952, 1044, 1065, 1110, 1243, 1327, 1432, 1534
HspAI	GCGC	4 cut(s)	56, 312, 693, 821
Kpn2I	TCCGGA	2 cut(s)	281, 1012
KroI	GCCGGC	2 cut(s)	614, 695
KroNI	GCCGGC	2 cut(s)	616, 697
Ksp22I	TGATCA	1 cut(s)	1486
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
Lsp1109I	GCAGC	4 cut(s)	82, 793, 1200, 1271
LweI	GCATC	5 cut(s)	213, 388, 594, 1136, 1615
MaeII	ACGT	2 cut(s)	663, 751
MaeIII	GTNAC	4 cut(s)	20, 499, 761, 1057
MalI	GATC	6 cut(s)	231, 383, 1036, 1344, 1488, 1698
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
MboII	GAAGA	6 cut(s)	152, 990, 1133, 1244, 1456, 1587
MflI	RGATCY	4 cut(s)	381, 1034, 1342, 1696
MhlI	GDGCHC	7 cut(s)	644, 722, 992, 1026, 1106, 1198, 1403
MlsI	TGGCCA	1 cut(s)	947
MluCI	AATT	6 cut(s)	10, 1235, 1264, 1280, 1408, 1490
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	8 cut(s)	279, 382, 437, 614, 945, 956, 1182, 1746
MmeI	TCCRAC	2 cut(s)	720, 1552
Mox20I	TGGCCA	1 cut(s)	947
MreI	CGCCGGCG	2 cut(s)	614, 695
MroI	TCCGGA	2 cut(s)	281, 1012
MroNI	GCCGGC	2 cut(s)	614, 695
MroXI	GAANNNNTTC	1 cut(s)	1579
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	3 cut(s)	462, 771, 1376
Msp20I	TGGCCA	1 cut(s)	947
MspA1I	CMGCKG	2 cut(s)	323, 1745
MspI	CCGG	9 cut(s)	155, 282, 482, 556, 576, 615, 696, 1013, 1254
MspR9I	CCNGG	6 cut(s)	470, 556, 970, 1027, 1209, 1336
Mva1269I	GAATGC	2 cut(s)	1093, 1519
MvaI	CCWGG	5 cut(s)	470, 970, 1027, 1209, 1336
MvnI	CGCG	3 cut(s)	56, 303, 323
NaeI	GCCGGC	2 cut(s)	616, 697
NciI	CCSGG	1 cut(s)	556
NcoI	CCATGG	3 cut(s)	948, 1040, 1106
NdeII	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
NgoMIV	GCCGGC	2 cut(s)	614, 695
NlaIII	CATG	9 cut(s)	832, 952, 1044, 1065, 1110, 1243, 1327, 1432, 1534
NlaIV	GGNNCC	5 cut(s)	1024, 1036, 1333, 1434, 1547
NmeAIII	GCCGAG	1 cut(s)	835
NmuCI	GTSAC	3 cut(s)	20, 499, 761
NspI	RCATGY	2 cut(s)	832, 1327
PaeI	GCATGC	1 cut(s)	1327
PagI	TCATGA	1 cut(s)	1239
PaqCI	CACCTGC	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 354, 615
PctI	GAATGC	2 cut(s)	1093, 1519
PdiI	GCCGGC	2 cut(s)	616, 697
PdmI	GAANNNNTTC	1 cut(s)	1579
PfeI	GAWTC	1 cut(s)	1204
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	2 cut(s)	96, 579
PfoI	TCCNGGA	1 cut(s)	968
PleI	GAGTC	8 cut(s)	279, 382, 437, 614, 944, 956, 1182, 1745
PpsI	GAGTC	8 cut(s)	279, 382, 437, 614, 944, 956, 1182, 1745
PpuMI	RGGWCCY	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	1568
Psp124BI	GAGCTC	3 cut(s)	644, 722, 1198
Psp1406I	AACGTT	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	5 cut(s)	468, 968, 1025, 1207, 1334
PspFI	CCCAGC	3 cut(s)	183, 860, 926
PspGI	CCWGG	5 cut(s)	468, 968, 1025, 1207, 1334
PspN4I	GGNNCC	5 cut(s)	1024, 1036, 1333, 1434, 1547
PspOMI	GGGCCC	1 cut(s)	1022
PspPI	GGNCC	6 cut(s)	247, 484, 678, 867, 1022, 1023
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	1086
PsuI	RGATCY	4 cut(s)	381, 1034, 1342, 1696
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	1745
RsaI	GTAC	4 cut(s)	662, 1152, 1639, 1759
RsaNI	GTAC	4 cut(s)	661, 1151, 1638, 1758
Rsr2I	CGGWCCG	1 cut(s)	678
RsrII	CGGWCCG	1 cut(s)	678
SacI	GAGCTC	3 cut(s)	644, 722, 1198
SacII	CCGCGG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	462, 771, 1376
Sau3AI	GATC	6 cut(s)	229, 381, 1034, 1342, 1486, 1696
Sau96I	GGNCC	6 cut(s)	247, 484, 678, 867, 1022, 1023
SchI	GAGTC	8 cut(s)	279, 382, 437, 614, 945, 956, 1182, 1746
ScrFI	CCNGG	6 cut(s)	470, 556, 970, 1027, 1209, 1336
SduI	GDGCHC	7 cut(s)	644, 722, 992, 1026, 1106, 1198, 1403
SfaNI	GCATC	5 cut(s)	213, 388, 594, 1136, 1615
SfcI	CTRYAG	1 cut(s)	1082
Sfr303I	CCGCGG	1 cut(s)	324
SgrAI	CRCCGGYG	2 cut(s)	614, 695
SgrBI	CCGCGG	1 cut(s)	324
SinI	GGWCC	3 cut(s)	247, 484, 678
SphI	GCATGC	1 cut(s)	1327
Sse9I	AATT	6 cut(s)	10, 1235, 1264, 1280, 1408, 1490
SstI	GAGCTC	3 cut(s)	644, 722, 1198
StyD4I	CCNGG	6 cut(s)	468, 554, 968, 1025, 1207, 1334
StyI	CCWWGG	5 cut(s)	115, 948, 1040, 1106, 1436
TaaI	ACNGT	7 cut(s)	20, 545, 682, 1150, 1168, 1482, 1649
TaiI	ACGT	2 cut(s)	666, 754
TaqI	TCGA	5 cut(s)	84, 126, 446, 1562, 1735
TasI	AATT	6 cut(s)	10, 1235, 1264, 1280, 1408, 1490
TatI	WGTACW	2 cut(s)	1637, 1757
TfiI	GAWTC	1 cut(s)	1204
Tru1I	TTAA	3 cut(s)	462, 771, 1376
Tru9I	TTAA	3 cut(s)	462, 771, 1376
TscAI	CASTG	1 cut(s)	1206
TseFI	GTSAC	3 cut(s)	20, 499, 761
TseI	GCWGC	4 cut(s)	70, 806, 1213, 1259
Tsp45I	GTSAC	3 cut(s)	20, 499, 761
TspDTI	ATGAA	6 cut(s)	1083, 1133, 1151, 1228, 1395, 1683
TspGWI	ACGGA	2 cut(s)	487, 613
TspRI	CASTG	1 cut(s)	1206
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	2 cut(s)	96, 579
VneI	GTGCAC	1 cut(s)	1399
VpaK11BI	GGWCC	3 cut(s)	247, 484, 678
XapI	RAATTY	1 cut(s)	1235
XceI	RCATGY	2 cut(s)	832, 1327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	1579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.