Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

68865815 .. 68877897

Gene Structure 12083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG509700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGATGAGCAGCTTGGTGGTCTCAACTCCTATCTCACCAGCTCTCCTTACTCCAAACTTGCCATTGTTCTTGTCTCTGACATTTTTGGTCCTCACCCACACTTCAAAACATAATATTTTTTCATTTGGGTATGATGCTCCAAACTTGAGGTATGAAGAAAATGTGAAAGTTGATGTTGTTGTCATTGAGTCAGATAATGTGGCAAATGCAATAGCAGCTGAGTTTCTAAGAGGAGAGTGTCTCACTGGAAGTTCTAGCACCCCAAGCATAGATCTCTTGGATCTCTTTCGAGGAATCGAGCTGCATGTCATAGAGGAAAGCGAGCACCCCATAAAACCCCTGCTTGGAGGCTTTGCTTCTTTGTCAATGCAAGTACGGACAAAATATTACGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGAGGTTCCGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGCGACTTCCGCCACATCTACCGCGGAACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCTTCGCCGGCGACTCCGTGGTGTTTATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGACCGTGAGGGCGAGCGCCGGCGGCGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAAGTGACGAGTTTAAGACTAAGCTTTCGGCGGCGGCTGTGGCGGAGGCTGCGGAGATGGCGGCGCAGGACATGGCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCGGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACGTGGGATGAACCTGAAGTTCTGCAAAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCACTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCAGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGAGGGTGTCTACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCGCATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCGACAAAGGTTGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGCTCTCAAGTCTGGCACAAGCTGATTAGGATTATTGACCATTGCAGTAGTGTTATGAGAATCCGACCCCAGATGAACATCATTGTTACTTTGTTAGTCATGAATCAGTTTGAGGGACGGTCTCAAACGGACTCTATGACGTTCTCTGTGCCTTATCGTGTGTTGAGTAGCATTATAACAGTTAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

600

Amino Acids

66.46

Weight (kDa)

6.74

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	131 - 225	6.6e-16	B3 DNA binding domain
BRWD_AD	PF25313	258 - 372	2.2e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	290 - 373	9.8e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1787
AarI	CACCTGC	1 cut(s)	696
Acc36I	ACCTGC	2 cut(s)	510, 696
AccB1I	GGYRCC	1 cut(s)	1426
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	1448
AccII	CGCG	1 cut(s)	540
AccIII	TCCGGA	1 cut(s)	1006
AclWI	GGATC	3 cut(s)	288, 1023, 1036
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	2 cut(s)	1229, 1378
AcuI	CTGAAG	3 cut(s)	749, 1031, 1089
AfaI	GTAC	3 cut(s)	375, 656, 1146
AfiI	CCNNNNNNNGG	7 cut(s)	344, 573, 645, 854, 1013, 1025, 1247
AjnI	CCWGG	4 cut(s)	462, 962, 1201, 1328
Alw21I	GWGCWC	5 cut(s)	327, 638, 716, 1192, 1397
Alw26I	GTCTC	6 cut(s)	25, 78, 245, 941, 1174, 1737
Alw44I	GTGCAC	1 cut(s)	1393
AlwI	GGATC	3 cut(s)	288, 1023, 1036
Ama87I	CYCGRG	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	4 cut(s)	861, 939, 996, 1016
ApaLI	GTGCAC	1 cut(s)	1393
ApeKI	GCWGC	6 cut(s)	9, 215, 301, 800, 1207, 1253
ApoI	RAATTY	2 cut(s)	1229, 1378
ArsI	GACNNNNNNTTYG	4 cut(s)	760, 792, 812, 844
Asp700I	GAANNNNTTC	1 cut(s)	1573
AspLEI	GCGC	2 cut(s)	689, 817
AspS9I	GGNCC	5 cut(s)	88, 478, 672, 861, 1016
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	7 cut(s)	27, 85, 487, 556, 886, 1105, 1482
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	3 cut(s)	88, 478, 672
BaeGI	GKGCMC	2 cut(s)	986, 1397
BalI	TGGCCA	1 cut(s)	941
BamHI	GGATCC	1 cut(s)	1028
BanI	GGYRCC	1 cut(s)	1426
BanII	GRGCYC	4 cut(s)	638, 716, 1100, 1192
BarI	GAAGNNNNNNTAC	2 cut(s)	1137, 1169
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	5 cut(s)	327, 638, 716, 1192, 1397
BbvI	GCAGC	6 cut(s)	21, 227, 288, 787, 1194, 1265
BccI	CCATC	3 cut(s)	802, 931, 1529
BceAI	ACGGC	2 cut(s)	523, 933
BciT130I	CCWGG	4 cut(s)	464, 964, 1203, 1330
BciVI	GTATCC	1 cut(s)	1360
BclI	TGATCA	1 cut(s)	1480
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	6 cut(s)	25, 78, 245, 941, 1174, 1737
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	1799
BfoI	RGCGCY	1 cut(s)	690
BfuAI	ACCTGC	2 cut(s)	510, 696
BfuI	GTATCC	1 cut(s)	1360
BglII	AGATCT	2 cut(s)	271, 1336
BlpI	GCTNAGC	1 cut(s)	468
Bme1390I	CCNGG	5 cut(s)	464, 550, 964, 1203, 1330
Bme18I	GGWCC	3 cut(s)	88, 478, 672
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	5 cut(s)	88, 478, 672, 861, 1016
BmiI	GGNNCC	5 cut(s)	428, 1030, 1327, 1428, 1541
BmrFI	CCNGG	5 cut(s)	464, 550, 964, 1203, 1330
BmsI	GCATC	4 cut(s)	124, 382, 588, 1130
BpiI	GAAGAC	1 cut(s)	984
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpmI	CTGGAG	3 cut(s)	595, 622, 946
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	166, 1602
BpuMI	CCSGG	1 cut(s)	550
BsaAI	YACGTR	1 cut(s)	1056
BsaBI	GATNNNNATC	1 cut(s)	1688
BsaI	GGTCTC	2 cut(s)	25, 1737
BsaWI	WCCGGW	2 cut(s)	1006, 1247
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	7 cut(s)	344, 573, 645, 854, 1013, 1025, 1247
Bse118I	RCCGGY	4 cut(s)	475, 569, 608, 689
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	1651
Bse8I	GATNNNNATC	1 cut(s)	1688
BseAI	TCCGGA	1 cut(s)	1006
BseBI	CCWGG	4 cut(s)	464, 964, 1203, 1330
BseGI	GGATG	3 cut(s)	930, 972, 1066
BseJI	GATNNNNATC	1 cut(s)	1688
BseLI	CCNNNNNNNGG	7 cut(s)	344, 573, 645, 854, 1013, 1025, 1247
BseMI	GCAATG	1 cut(s)	1651
BseMII	CTCAG	5 cut(s)	210, 459, 1202, 1400, 1443
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	5 cut(s)	246, 646, 752, 949, 1374
BseSI	GKGCMC	2 cut(s)	986, 1397
BseXI	GCAGC	6 cut(s)	21, 227, 288, 787, 1194, 1265
BseYI	CCCAGC	2 cut(s)	854, 920
BsgI	GTGCAG	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	4 cut(s)	863, 941, 998, 1018
BshNI	GGYRCC	1 cut(s)	1426
BsiHKAI	GWGCWC	5 cut(s)	327, 638, 716, 1192, 1397
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	7 cut(s)	476, 550, 570, 609, 690, 1007, 1248
BslFI	GGGAC	2 cut(s)	404, 1740
BslI	CCNNNNNNNGG	7 cut(s)	344, 573, 645, 854, 1013, 1025, 1247
BsmAI	GTCTC	6 cut(s)	25, 78, 245, 941, 1174, 1737
BsmFI	GGGAC	2 cut(s)	404, 1740
BsmI	GAATGC	1 cut(s)	1513
BsnI	GGCC	4 cut(s)	863, 941, 998, 1018
Bso31I	GGTCTC	2 cut(s)	25, 1737
BsoBI	CYCGRG	1 cut(s)	421
Bsp1286I	GDGCHC	7 cut(s)	327, 638, 716, 986, 1100, 1192, 1397
Bsp13I	TCCGGA	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
Bsp1720I	GCTNAGC	1 cut(s)	468
Bsp19I	CCATGG	3 cut(s)	942, 1034, 1100
BspANI	GGCC	4 cut(s)	863, 941, 998, 1018
BspCNI	CTCAG	5 cut(s)	211, 460, 1203, 1399, 1444
BspEI	TCCGGA	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	540
BspHI	TCATGA	2 cut(s)	1233, 1710
BspLI	GGNNCC	5 cut(s)	428, 1030, 1327, 1428, 1541
BspMI	ACCTGC	2 cut(s)	510, 696
BspPI	GGATC	3 cut(s)	288, 1023, 1036
BspQI	GCTCTTC	1 cut(s)	608
BspT107I	GGYRCC	1 cut(s)	1426
BspTNI	GGTCTC	2 cut(s)	25, 1737
BsrDI	GCAATG	1 cut(s)	1651
BsrFI	RCCGGY	4 cut(s)	475, 569, 608, 689
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	4 cut(s)	475, 569, 608, 689
BssMI	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
BssT1I	CCWWGG	5 cut(s)	942, 1019, 1034, 1100, 1430
Bst2UI	CCWGG	4 cut(s)	464, 964, 1203, 1330
Bst4CI	ACNGT	6 cut(s)	676, 1144, 1162, 1476, 1731, 1792
Bst6I	CTCTTC	3 cut(s)	608, 1140, 1433
BstBAI	YACGTR	1 cut(s)	1056
BstC8I	GCNNGC	6 cut(s)	323, 610, 685, 691, 1315, 1319
BstDEI	CTNAG	8 cut(s)	219, 227, 468, 771, 1086, 1211, 1386, 1452
BstDSI	CCRYGG	5 cut(s)	538, 618, 942, 1034, 1100
BstF5I	GGATG	3 cut(s)	930, 972, 1066
BstFNI	CGCG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	689, 817
BstKTI	GATC	5 cut(s)	274, 283, 1031, 1339, 1483
BstMAI	GTCTC	6 cut(s)	25, 78, 245, 941, 1174, 1737
BstMBI	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
BstNI	CCWGG	4 cut(s)	464, 964, 1203, 1330
BstNSI	RCATGY	2 cut(s)	308, 1321
BstSCI	CCNGG	5 cut(s)	462, 548, 962, 1201, 1328
BstSFI	CTRYAG	1 cut(s)	1799
BstSLI	GKGCMC	2 cut(s)	986, 1397
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	6 cut(s)	21, 227, 288, 787, 1194, 1265
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	4 cut(s)	271, 280, 1028, 1336
BstYI	RGATCY	4 cut(s)	271, 280, 1028, 1336
BsuI	GTATCC	1 cut(s)	1360
BsuRI	GGCC	4 cut(s)	863, 941, 998, 1018
BtgI	CCRYGG	5 cut(s)	538, 618, 942, 1034, 1100
BtsCI	GGATG	3 cut(s)	930, 972, 1066
BtsIMutI	CAGTG	2 cut(s)	243, 1193
BveI	ACCTGC	2 cut(s)	510, 696
Cac8I	GCNNGC	6 cut(s)	323, 610, 685, 691, 1315, 1319
CciI	TCATGA	2 cut(s)	1233, 1710
CfoI	GCGC	2 cut(s)	689, 817
Cfr10I	RCCGGY	4 cut(s)	475, 569, 608, 689
Cfr13I	GGNCC	5 cut(s)	88, 478, 672, 861, 1016
Cfr42I	CCGCGG	1 cut(s)	541
CpoI	CGGWCCG	1 cut(s)	672
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	3 cut(s)	374, 655, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CspI	CGGWCCG	1 cut(s)	672
CviQI	GTAC	3 cut(s)	374, 655, 1145
DdeI	CTNAG	8 cut(s)	219, 227, 468, 771, 1086, 1211, 1386, 1452
DpnI	GATC	5 cut(s)	273, 282, 1030, 1338, 1482
DpnII	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	3 cut(s)	608, 1140, 1433
EarI	CTCTTC	3 cut(s)	608, 1140, 1433
EciI	GGCGGA	3 cut(s)	515, 685, 809
Ecl136II	GAGCTC	3 cut(s)	636, 714, 1190
Eco130I	CCWWGG	5 cut(s)	942, 1019, 1034, 1100, 1430
Eco24I	GRGCYC	4 cut(s)	638, 716, 1100, 1192
Eco31I	GGTCTC	2 cut(s)	25, 1737
Eco47I	GGWCC	3 cut(s)	88, 478, 672
Eco53kI	GAGCTC	3 cut(s)	636, 714, 1190
Eco57I	CTGAAG	3 cut(s)	749, 1031, 1089
Eco88I	CYCGRG	1 cut(s)	421
EcoICRI	GAGCTC	3 cut(s)	636, 714, 1190
EcoRI	GAATTC	1 cut(s)	1229
EcoRII	CCWGG	4 cut(s)	462, 962, 1201, 1328
EcoT14I	CCWWGG	5 cut(s)	942, 1019, 1034, 1100, 1430
EcoT38I	GRGCYC	4 cut(s)	638, 716, 1100, 1192
ErhI	CCWWGG	5 cut(s)	942, 1019, 1034, 1100, 1430
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 1561, 1593
FaqI	GGGAC	2 cut(s)	404, 1740
FauI	CCCGC	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	1480
FblI	GTMKAC	1 cut(s)	1448
FokI	GGATG	3 cut(s)	937, 979, 1073
FriOI	GRGCYC	4 cut(s)	638, 716, 1100, 1192
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	2 cut(s)	688, 816
GsaI	CCCAGC	2 cut(s)	858, 924
GsuI	CTGGAG	3 cut(s)	595, 622, 946
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	863, 941, 998, 1018
HapII	CCGG	7 cut(s)	476, 550, 570, 609, 690, 1007, 1248
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	689, 817
Hin6I	GCGC	2 cut(s)	687, 815
HinP1I	GCGC	2 cut(s)	687, 815
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HindIII	AAGCTT	1 cut(s)	773
HpaII	CCGG	7 cut(s)	476, 550, 570, 609, 690, 1007, 1248
HphI	GGTGA	7 cut(s)	27, 85, 487, 556, 886, 1105, 1482
Hpy166II	GTNNAC	4 cut(s)	1111, 1395, 1449, 1472
Hpy188I	TCNGA	9 cut(s)	78, 193, 736, 849, 1187, 1389, 1480, 1596, 1676
Hpy188III	TCNNGA	8 cut(s)	421, 481, 639, 750, 934, 1007, 1234, 1711
Hpy8I	GTNNAC	4 cut(s)	1111, 1395, 1449, 1472
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	8 cut(s)	737, 871, 889, 898, 1018, 1140, 1158, 1604
HpyCH4III	ACNGT	6 cut(s)	676, 1144, 1162, 1476, 1731, 1792
HpyCH4IV	ACGT	3 cut(s)	657, 1055, 1751
HpyF3I	CTNAG	8 cut(s)	219, 227, 468, 771, 1086, 1211, 1386, 1452
HpySE526I	ACGT	3 cut(s)	657, 1055, 1751
HspAI	GCGC	2 cut(s)	687, 815
Kpn2I	TCCGGA	1 cut(s)	1006
KroI	GCCGGC	2 cut(s)	608, 689
KroNI	GCCGGC	2 cut(s)	610, 691
Ksp22I	TGATCA	1 cut(s)	1480
KspI	CCGCGG	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	8 cut(s)	142, 576, 633, 641, 711, 1195, 1250, 1325
Lsp1109I	GCAGC	6 cut(s)	21, 227, 288, 787, 1194, 1265
LweI	GCATC	4 cut(s)	124, 382, 588, 1130
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	3 cut(s)	657, 1055, 1751
MaeIII	GTNAC	4 cut(s)	493, 755, 1051, 1696
MalI	GATC	5 cut(s)	273, 282, 1030, 1338, 1482
MboI	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
MboII	GAAGA	7 cut(s)	167, 595, 984, 1127, 1238, 1450, 1581
MflI	RGATCY	4 cut(s)	271, 280, 1028, 1336
MhlI	GDGCHC	7 cut(s)	327, 638, 716, 986, 1100, 1192, 1397
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	6 cut(s)	1229, 1258, 1274, 1378, 1402, 1484
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	7 cut(s)	197, 431, 608, 939, 950, 1176, 1736
MmeI	TCCRAC	3 cut(s)	714, 1546, 1699
Mox20I	TGGCCA	1 cut(s)	941
MreI	CGCCGGCG	2 cut(s)	608, 689
MroI	TCCGGA	1 cut(s)	1006
MroNI	GCCGGC	2 cut(s)	608, 689
MroXI	GAANNNNTTC	1 cut(s)	1573
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	4 cut(s)	456, 765, 1370, 1794
Msp20I	TGGCCA	1 cut(s)	941
MspA1I	CMGCKG	2 cut(s)	218, 540
MspI	CCGG	7 cut(s)	476, 550, 570, 609, 690, 1007, 1248
MspR9I	CCNGG	5 cut(s)	464, 550, 964, 1203, 1330
Mva1269I	GAATGC	1 cut(s)	1513
MvaI	CCWGG	4 cut(s)	464, 964, 1203, 1330
MvnI	CGCG	1 cut(s)	540
NaeI	GCCGGC	2 cut(s)	610, 691
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	3 cut(s)	942, 1034, 1100
NdeII	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
NgoMIV	GCCGGC	2 cut(s)	608, 689
NlaIV	GGNNCC	5 cut(s)	428, 1030, 1327, 1428, 1541
NmuCI	GTSAC	2 cut(s)	493, 755
NspI	RCATGY	2 cut(s)	308, 1321
PaeI	GCATGC	1 cut(s)	1321
PagI	TCATGA	2 cut(s)	1233, 1710
PaqCI	CACCTGC	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	1513
PdiI	GCCGGC	2 cut(s)	610, 691
PdmI	GAANNNNTTC	1 cut(s)	1573
PfeI	GAWTC	4 cut(s)	294, 1198, 1671, 1714
PflMI	CCANNNNNTGG	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	962
PleI	GAGTC	7 cut(s)	196, 431, 608, 938, 950, 1176, 1736
PpsI	GAGTC	7 cut(s)	196, 431, 608, 938, 950, 1176, 1736
Ppu21I	YACGTR	1 cut(s)	1056
PsiI	TTATAA	1 cut(s)	1787
Psp124BI	GAGCTC	3 cut(s)	638, 716, 1192
Psp6I	CCWGG	4 cut(s)	462, 962, 1201, 1328
PspFI	CCCAGC	2 cut(s)	854, 920
PspGI	CCWGG	4 cut(s)	462, 962, 1201, 1328
PspN4I	GGNNCC	5 cut(s)	428, 1030, 1327, 1428, 1541
PspPI	GGNCC	5 cut(s)	88, 478, 672, 861, 1016
PsuI	RGATCY	4 cut(s)	271, 280, 1028, 1336
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	375, 656, 1146
RsaNI	GTAC	3 cut(s)	374, 655, 1145
Rsr2I	CGGWCCG	1 cut(s)	672
RsrII	CGGWCCG	1 cut(s)	672
SacI	GAGCTC	3 cut(s)	638, 716, 1192
SacII	CCGCGG	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	4 cut(s)	456, 765, 1370, 1794
Sau3AI	GATC	5 cut(s)	271, 280, 1028, 1336, 1480
Sau96I	GGNCC	5 cut(s)	88, 478, 672, 861, 1016
SchI	GAGTC	7 cut(s)	197, 431, 608, 939, 950, 1176, 1736
ScrFI	CCNGG	5 cut(s)	464, 550, 964, 1203, 1330
SduI	GDGCHC	7 cut(s)	327, 638, 716, 986, 1100, 1192, 1397
SfaNI	GCATC	4 cut(s)	124, 382, 588, 1130
SfcI	CTRYAG	1 cut(s)	1799
Sfr303I	CCGCGG	1 cut(s)	541
SgrAI	CRCCGGYG	2 cut(s)	608, 689
SgrBI	CCGCGG	1 cut(s)	541
SinI	GGWCC	3 cut(s)	88, 478, 672
SmlI	CTYRAG	2 cut(s)	145, 1617
SmoI	CTYRAG	2 cut(s)	145, 1617
SphI	GCATGC	1 cut(s)	1321
Sse9I	AATT	6 cut(s)	1229, 1258, 1274, 1378, 1402, 1484
SspI	AATATT	2 cut(s)	115, 386
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	3 cut(s)	638, 716, 1192
StyD4I	CCNGG	5 cut(s)	462, 548, 962, 1201, 1328
StyI	CCWWGG	5 cut(s)	942, 1019, 1034, 1100, 1430
TaaI	ACNGT	6 cut(s)	676, 1144, 1162, 1476, 1731, 1792
TaiI	ACGT	3 cut(s)	660, 1058, 1754
TaqI	TCGA	4 cut(s)	289, 297, 440, 1556
TasI	AATT	6 cut(s)	1229, 1258, 1274, 1378, 1402, 1484
TauI	GCSGC	8 cut(s)	454, 475, 513, 696, 705, 785, 788, 815
TfiI	GAWTC	4 cut(s)	294, 1198, 1671, 1714
Tru1I	TTAA	4 cut(s)	456, 765, 1370, 1794
Tru9I	TTAA	4 cut(s)	456, 765, 1370, 1794
TscAI	CASTG	2 cut(s)	250, 1200
TseFI	GTSAC	2 cut(s)	493, 755
TseI	GCWGC	6 cut(s)	9, 215, 301, 800, 1207, 1253
Tsp45I	GTSAC	2 cut(s)	493, 755
TspDTI	ATGAA	9 cut(s)	111, 168, 1077, 1127, 1145, 1222, 1389, 1700, 1727
TspGWI	ACGGA	5 cut(s)	391, 419, 481, 607, 1754
TspRI	CASTG	2 cut(s)	250, 1200
Van91I	CCANNNNNTGG	1 cut(s)	573
VneI	GTGCAC	1 cut(s)	1393
VpaK11BI	GGWCC	3 cut(s)	88, 478, 672
XapI	RAATTY	2 cut(s)	1229, 1378
XceI	RCATGY	2 cut(s)	308, 1321
XmiI	GTMKAC	1 cut(s)	1448
XmnI	GAANNNNTTC	1 cut(s)	1573
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.