Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

68810749 .. 68812584

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG509100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATGACTTGGTTTCAGGGCAATCTGTCTTCCGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCTCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCCGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACCGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTTGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGTCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGCATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAGCAACAACATGGTGCCAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCGACAAAGATCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTATAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

265

Amino Acids

29.29

Weight (kDa)

5.4

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	4 - 52	2.2e-13	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	73, 735
AcsI	RAATTY	2 cut(s)	266, 415
AcuI	CTGAAG	2 cut(s)	68, 126
AfaI	GTAC	2 cut(s)	183, 790
AfiI	CCNNNNNNNGG	3 cut(s)	50, 62, 284
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	4 cut(s)	227, 293, 776, 785
AluI	AGCT	4 cut(s)	227, 293, 776, 785
Alw21I	GWGCWC	2 cut(s)	229, 434
Alw26I	GTCTC	2 cut(s)	211, 775
Alw44I	GTGCAC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	73, 735
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	244, 290, 450
ApoI	RAATTY	2 cut(s)	266, 415
Asp700I	GAANNNNTTC	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	142, 519
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	137, 229
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	229, 434
BbvI	GCAGC	3 cut(s)	231, 302, 462
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	211, 775
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	245, 291, 451
BlsI	GCNGC	3 cut(s)	246, 292, 452
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	3 cut(s)	364, 465, 578
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	3 cut(s)	167, 395, 646
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	1 cut(s)	21
BsaJI	CCNNGG	6 cut(s)	56, 71, 137, 239, 422, 467
BsaWI	WCCGGW	2 cut(s)	43, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 62, 284
Bse1I	ACTGG	2 cut(s)	676, 729
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	6 cut(s)	56, 71, 137, 239, 422, 467
BseGI	GGATG	3 cut(s)	103, 386, 432
BseLI	CCNNNNNNNGG	3 cut(s)	50, 62, 284
BseMII	CTCAG	3 cut(s)	239, 480, 786
BseNI	ACTGG	2 cut(s)	676, 729
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	231, 302, 462
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	229, 434
BsiSI	CCGG	2 cut(s)	44, 285
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	3 cut(s)	50, 62, 284
BsmAI	GTCTC	2 cut(s)	211, 775
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	137, 229, 434
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	65, 373, 517, 600, 727
Bsp19I	CCATGG	2 cut(s)	71, 137
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	240, 481, 785
BspEI	TCCGGA	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	364, 465, 578
BspPI	GGATC	2 cut(s)	73, 735
BspT107I	GGYRCC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	676, 729
BssECI	CCNNGG	6 cut(s)	56, 71, 137, 239, 422, 467
BssMI	GATC	5 cut(s)	65, 373, 517, 600, 727
BssT1I	CCWWGG	5 cut(s)	56, 71, 137, 239, 467
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	181, 199, 513, 680
Bst6I	CTCTTC	2 cut(s)	177, 470
BstC8I	GCNNGC	2 cut(s)	352, 356
BstDEI	CTNAG	4 cut(s)	123, 248, 489, 772
BstDSI	CCRYGG	2 cut(s)	71, 137
BstF5I	GGATG	3 cut(s)	103, 386, 432
BstKTI	GATC	5 cut(s)	68, 376, 520, 603, 730
BstMAI	GTCTC	2 cut(s)	211, 775
BstMBI	GATC	5 cut(s)	65, 373, 517, 600, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	231, 302, 462
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	3 cut(s)	65, 373, 727
BstYI	RGATCY	3 cut(s)	65, 373, 727
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	2 cut(s)	71, 137
BtsCI	GGATG	3 cut(s)	103, 386, 432
BtsIMutI	CAGTG	2 cut(s)	230, 669
Cac8I	GCNNGC	2 cut(s)	352, 356
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	182, 789
CviAII	CATG	7 cut(s)	72, 93, 138, 271, 355, 460, 562
CviJI	RGCY	9 cut(s)	55, 135, 227, 244, 293, 365, 537, 776, 785
CviKI_1	RGCY	9 cut(s)	55, 135, 227, 244, 293, 365, 537, 776, 785
CviQI	GTAC	2 cut(s)	182, 789
DdeI	CTNAG	4 cut(s)	123, 248, 489, 772
DpnI	GATC	5 cut(s)	67, 375, 519, 602, 729
DpnII	GATC	5 cut(s)	65, 373, 517, 600, 727
Eam1104I	CTCTTC	2 cut(s)	177, 470
EarI	CTCTTC	2 cut(s)	177, 470
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	5 cut(s)	56, 71, 137, 239, 467
Eco24I	GRGCYC	2 cut(s)	137, 229
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	68, 126
EcoICRI	GAGCTC	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	5 cut(s)	56, 71, 137, 239, 467
EcoT38I	GRGCYC	2 cut(s)	137, 229
ErhI	CCWWGG	5 cut(s)	56, 71, 137, 239, 467
FaeI	CATG	7 cut(s)	75, 96, 141, 274, 358, 463, 565
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	7 cut(s)	71, 92, 137, 270, 354, 459, 561
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	245, 291, 451
FokI	GGATG	3 cut(s)	110, 373, 439
FriOI	GRGCYC	2 cut(s)	137, 229
Fsp4HI	GCNGC	3 cut(s)	245, 291, 451
GluI	GCNGC	3 cut(s)	245, 291, 451
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	44, 285
Hin1II	CATG	7 cut(s)	75, 96, 141, 274, 358, 463, 565
HincII	GTYRAC	2 cut(s)	148, 486
HindII	GTYRAC	2 cut(s)	148, 486
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	3 cut(s)	219, 235, 768
HpaII	CCGG	2 cut(s)	44, 285
HphI	GGTGA	2 cut(s)	142, 519
Hpy166II	GTNNAC	5 cut(s)	148, 432, 486, 509, 548
Hpy188I	TCNGA	6 cut(s)	224, 426, 517, 605, 633, 714
Hpy188III	TCNNGA	2 cut(s)	44, 271
Hpy8I	GTNNAC	5 cut(s)	148, 432, 486, 509, 548
HpyAV	CCTTC	4 cut(s)	55, 177, 195, 641
HpyCH4III	ACNGT	4 cut(s)	181, 199, 513, 680
HpyCH4V	TGCA	6 cut(s)	158, 358, 386, 432, 588, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	4 cut(s)	123, 248, 489, 772
Hsp92II	CATG	7 cut(s)	75, 96, 141, 274, 358, 463, 565
Kpn2I	TCCGGA	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	65, 373, 517, 600, 727
LmnI	GCTCC	3 cut(s)	232, 287, 362
Lsp1109I	GCAGC	3 cut(s)	231, 302, 462
LweI	GCATC	3 cut(s)	167, 395, 646
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	67, 375, 519, 602, 729
MboI	GATC	5 cut(s)	65, 373, 517, 600, 727
MboII	GAAGA	5 cut(s)	21, 164, 275, 487, 618
MflI	RGATCY	3 cut(s)	65, 373, 727
MhlI	GDGCHC	3 cut(s)	137, 229, 434
MluCI	AATT	6 cut(s)	266, 295, 311, 415, 439, 521
MlyI	GAGTC	2 cut(s)	213, 777
MnlI	CCTC	4 cut(s)	120, 253, 432, 471
MroI	TCCGGA	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	610
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	2 cut(s)	44, 285
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	782
NcoI	CCATGG	2 cut(s)	71, 137
NdeII	GATC	5 cut(s)	65, 373, 517, 600, 727
NlaIII	CATG	7 cut(s)	75, 96, 141, 274, 358, 463, 565
NlaIV	GGNNCC	3 cut(s)	364, 465, 578
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	246, 292, 452
PleI	GAGTC	2 cut(s)	213, 776
PpsI	GAGTC	2 cut(s)	213, 776
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	364, 465, 578
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	65, 373, 727
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	183, 790
RsaNI	GTAC	2 cut(s)	182, 789
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	3 cut(s)	245, 291, 451
Sau3AI	GATC	5 cut(s)	65, 373, 517, 600, 727
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	213, 777
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	3 cut(s)	137, 229, 434
SfaNI	GCATC	3 cut(s)	167, 395, 646
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	6 cut(s)	266, 295, 311, 415, 439, 521
SsiI	CCGC	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	5 cut(s)	56, 71, 137, 239, 467
TaaI	ACNGT	4 cut(s)	181, 199, 513, 680
TaqI	TCGA	2 cut(s)	593, 766
TasI	AATT	6 cut(s)	266, 295, 311, 415, 439, 521
TatI	WGTACW	1 cut(s)	788
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	237, 676
TseI	GCWGC	3 cut(s)	244, 290, 450
TspDTI	ATGAA	6 cut(s)	114, 164, 182, 259, 426, 714
TspRI	CASTG	2 cut(s)	237, 676
VneI	GTGCAC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	266, 415
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.