Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

65245860 .. 65248694

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGCCTCCCAATTCTCACCGTCACACTCGCTCTCGTTCTCATTCTCACTCTCACGCGCCTCCGCCGCCGCAGCTCGTCTCCATCGACCCCAAAATCTGGCGAGCCTGCGCCGGCAACTCCGTCACCATCCCCACTCTCCATTCTAGGGTTTACTACTTCCCCCAAGGCCACCTCGAACACTCCACCTCCTCCTCCTCCGCTCCGGTTCTTCTCTCTCCTCTCGTCCTCTCCCAGCCCCTCATTCTCTGCCGCATCGCCGCCGTCCAGTTCCTCGCTGATCCCACCACCGACGAGGTCCTCGCCAAGCTCCTCCTCCATCCTGTTCACTCCGGACTCTCCCCTCACCACCGCGAACTGAGCGCCGCCGCCGCGGCGGAGGAGGGAGAGGAGGACGACGATGGCGGCGATAGGGTGGTGTCGTTCGCTAAGATCTTGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGAGGTTTTGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCATATCTACCGCGGGACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCGTCGCCGGCGACTCCGTGGTGTTTATGAGGTGGGGAGATGTACGTCGGGGTGCGTCGGAGGAGGAACGTTCTGGAGGTGACGGGTTTAAGACGAGGCTTGCGGCGGAGGCTGTGGCGGAGGCTGCCGAGATGGCGGCGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACATTGTTGCATCAACACCTTCTCTTCATACTATACCTTCGCTTCATACTGTATTTCCCCCCACAAAGAGATTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATCGAGAGGAAGAATTCATGATACTTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACCTTTTTCCTGCTGGCATGCAGGGAGCCAGGCCAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAAGTCCTTTGGCAACAATAACATGGTGCTAAGGTTGAAGAGGGTGTCAACTGAGTTGAACATTGGAAGTCCACATAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCGACAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGTACTGGGGACGGTGGCAATATAGGGTATAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGTTCGAGTCTCAGCTGTTGAAGCTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

569

Amino Acids

62.68

Weight (kDa)

6.4

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	141 - 231	1.9e-20	B3 DNA binding domain
BRWD_AD	PF25313	266 - 366	9.8e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	283 - 366	6.8e-28	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
Acc36I	ACCTGC	1 cut(s)	564
AccB7I	CCANNNNNTGG	2 cut(s)	96, 627
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	4 cut(s)	56, 351, 371, 594
AccIII	TCCGGA	2 cut(s)	329, 985
AclI	AACGTT	1 cut(s)	724
AclWI	GGATC	4 cut(s)	272, 1002, 1015, 1647
AcoI	YGGCCR	1 cut(s)	918
AcsI	RAATTY	2 cut(s)	1208, 1357
AcuI	CTGAAG	2 cut(s)	1010, 1068
AfaI	GTAC	3 cut(s)	699, 1582, 1702
AfiI	CCNNNNNNNGG	6 cut(s)	96, 145, 627, 833, 992, 1004
AjnI	CCWGG	4 cut(s)	516, 941, 1180, 1307
AluBI	AGCT	7 cut(s)	73, 307, 833, 1169, 1235, 1688, 1697
AluI	AGCT	7 cut(s)	73, 307, 833, 1169, 1235, 1688, 1697
Alw21I	GWGCWC	2 cut(s)	1171, 1376
Alw26I	GTCTC	3 cut(s)	82, 920, 1687
Alw44I	GTGCAC	1 cut(s)	1372
AlwI	GGATC	4 cut(s)	272, 1002, 1015, 1647
Ama87I	CYCGRG	1 cut(s)	475
Aor13HI	TCCGGA	2 cut(s)	329, 985
AoxI	GGCC	5 cut(s)	166, 840, 918, 995, 1310
ApaLI	GTGCAC	1 cut(s)	1372
ApeKI	GCWGC	4 cut(s)	70, 779, 1186, 1232
ApoI	RAATTY	2 cut(s)	1208, 1357
ArsI	GACNNNNNNTTYG	2 cut(s)	791, 823
Asp700I	GAANNNNTTC	1 cut(s)	1522
AspLEI	GCGC	4 cut(s)	58, 110, 362, 796
AspS9I	GGNCC	4 cut(s)	295, 532, 840, 995
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	8 cut(s)	8, 115, 335, 541, 610, 746, 865, 1084
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	295, 532
BaeGI	GKGCMC	2 cut(s)	965, 1376
BalI	TGGCCA	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	1007
BanII	GRGCYC	2 cut(s)	1079, 1171
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	1171, 1376
BbvI	GCAGC	4 cut(s)	82, 766, 1173, 1244
BccI	CCATC	7 cut(s)	89, 134, 324, 392, 781, 910, 1478
BceAI	ACGGC	4 cut(s)	245, 577, 790, 912
BciT130I	CCWGG	4 cut(s)	518, 943, 1182, 1309
BciVI	GTATCC	1 cut(s)	1339
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	82, 920, 1687
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	1055
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	1339
BglI	GCCNNNNNGGC	2 cut(s)	371, 788
BglII	AGATCT	2 cut(s)	429, 1315
BlpI	GCTNAGC	1 cut(s)	522
Bme1390I	CCNGG	5 cut(s)	518, 604, 943, 1182, 1309
Bme18I	GGWCC	2 cut(s)	295, 532
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	4 cut(s)	295, 532, 840, 995
BmiI	GGNNCC	3 cut(s)	1009, 1306, 1490
BmrFI	CCNGG	5 cut(s)	518, 604, 943, 1182, 1309
BmrI	ACTGGG	1 cut(s)	1593
BmsI	GCATC	5 cut(s)	261, 436, 642, 1109, 1558
BmuI	ACTGGG	1 cut(s)	1593
BoxI	GACNNNNGTC	1 cut(s)	1511
BpiI	GAAGAC	1 cut(s)	963
BpmI	CTGGAG	3 cut(s)	649, 750, 925
Bpu10I	CCTNAGC	1 cut(s)	1409
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	604
BsaWI	WCCGGW	4 cut(s)	202, 329, 985, 1226
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 145, 627, 833, 992, 1004
Bse118I	RCCGGY	4 cut(s)	110, 529, 623, 662
Bse1I	ACTGG	3 cut(s)	265, 1588, 1641
BseAI	TCCGGA	2 cut(s)	329, 985
BseBI	CCWGG	4 cut(s)	518, 943, 1182, 1309
BseGI	GGATG	6 cut(s)	126, 316, 909, 951, 1045, 1374
BseLI	CCNNNNNNNGG	6 cut(s)	96, 145, 627, 833, 992, 1004
BseMII	CTCAG	5 cut(s)	347, 513, 1181, 1422, 1698
BseNI	ACTGG	3 cut(s)	265, 1588, 1641
BseSI	GKGCMC	2 cut(s)	965, 1376
BseXI	GCAGC	4 cut(s)	82, 766, 1173, 1244
BseYI	CCCAGC	3 cut(s)	231, 833, 899
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	4 cut(s)	56, 351, 371, 594
BshFI	GGCC	5 cut(s)	168, 842, 920, 997, 1312
BsiHKAI	GWGCWC	2 cut(s)	1171, 1376
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	9 cut(s)	111, 203, 330, 530, 604, 624, 663, 986, 1227
BslFI	GGGAC	4 cut(s)	458, 587, 610, 1601
BslI	CCNNNNNNNGG	6 cut(s)	96, 145, 627, 833, 992, 1004
BsmAI	GTCTC	3 cut(s)	82, 920, 1687
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	4 cut(s)	458, 587, 610, 1601
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	5 cut(s)	168, 842, 920, 997, 1312
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	4 cut(s)	965, 1079, 1171, 1376
Bsp13I	TCCGGA	2 cut(s)	329, 985
Bsp143I	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	3 cut(s)	921, 1013, 1079
BspANI	GGCC	5 cut(s)	168, 842, 920, 997, 1312
BspCNI	CTCAG	5 cut(s)	348, 514, 1182, 1423, 1697
BspEI	TCCGGA	2 cut(s)	329, 985
BspFNI	CGCG	4 cut(s)	56, 351, 371, 594
BspHI	TCATGA	1 cut(s)	1212
BspLI	GGNNCC	3 cut(s)	1009, 1306, 1490
BspMAI	CTGCAG	1 cut(s)	1059
BspMI	ACCTGC	1 cut(s)	564
BspPI	GGATC	4 cut(s)	272, 1002, 1015, 1647
BsrBI	CCGCTC	1 cut(s)	200
BsrFI	RCCGGY	4 cut(s)	110, 529, 623, 662
BsrI	ACTGG	3 cut(s)	265, 1588, 1641
BssAI	RCCGGY	4 cut(s)	110, 529, 623, 662
BssMI	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
BssT1I	CCWWGG	5 cut(s)	163, 921, 998, 1013, 1079
Bst2UI	CCWGG	4 cut(s)	518, 943, 1182, 1309
Bst4CI	ACNGT	3 cut(s)	20, 1141, 1592
Bst6I	CTCTTC	2 cut(s)	1119, 1412
BstAPI	GCANNNNNTGC	1 cut(s)	802
BstC8I	GCNNGC	7 cut(s)	102, 106, 112, 664, 756, 1294, 1298
BstDEI	CTNAG	8 cut(s)	356, 426, 522, 1065, 1190, 1409, 1431, 1684
BstDSI	CCRYGG	6 cut(s)	369, 592, 672, 921, 1013, 1079
BstF5I	GGATG	6 cut(s)	126, 316, 909, 951, 1045, 1374
BstFNI	CGCG	4 cut(s)	56, 351, 371, 594
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	4 cut(s)	58, 110, 362, 796
BstKTI	GATC	5 cut(s)	280, 432, 1010, 1318, 1642
BstMAI	GTCTC	3 cut(s)	82, 920, 1687
BstMBI	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
BstNI	CCWGG	4 cut(s)	518, 943, 1182, 1309
BstNSI	RCATGY	2 cut(s)	805, 1300
BstPAI	GACNNNNGTC	1 cut(s)	1511
BstSCI	CCNGG	5 cut(s)	516, 602, 941, 1180, 1307
BstSFI	CTRYAG	1 cut(s)	1055
BstSLI	GKGCMC	2 cut(s)	965, 1376
BstUI	CGCG	4 cut(s)	56, 351, 371, 594
BstV1I	GCAGC	4 cut(s)	82, 766, 1173, 1244
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	4 cut(s)	429, 1007, 1315, 1639
BstYI	RGATCY	4 cut(s)	429, 1007, 1315, 1639
BsuI	GTATCC	1 cut(s)	1339
BsuRI	GGCC	5 cut(s)	168, 842, 920, 997, 1312
BtgI	CCRYGG	6 cut(s)	369, 592, 672, 921, 1013, 1079
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	6 cut(s)	126, 316, 909, 951, 1045, 1374
BtsIMutI	CAGTG	1 cut(s)	1172
BveI	ACCTGC	1 cut(s)	564
Cac8I	GCNNGC	7 cut(s)	102, 106, 112, 664, 756, 1294, 1298
CciI	TCATGA	1 cut(s)	1212
CfoI	GCGC	4 cut(s)	58, 110, 362, 796
Cfr10I	RCCGGY	4 cut(s)	110, 529, 623, 662
Cfr13I	GGNCC	4 cut(s)	295, 532, 840, 995
Cfr42I	CCGCGG	2 cut(s)	372, 595
CseI	GACGC	2 cut(s)	547, 699
Csp6I	GTAC	3 cut(s)	698, 1581, 1701
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	9 cut(s)	802, 922, 1014, 1035, 1080, 1213, 1297, 1402, 1474
CviQI	GTAC	3 cut(s)	698, 1581, 1701
DdeI	CTNAG	8 cut(s)	356, 426, 522, 1065, 1190, 1409, 1431, 1684
DpnI	GATC	5 cut(s)	279, 431, 1009, 1317, 1641
DpnII	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
EaeI	YGGCCR	1 cut(s)	918
Eam1104I	CTCTTC	2 cut(s)	1119, 1412
EarI	CTCTTC	2 cut(s)	1119, 1412
EciI	GGCGGA	6 cut(s)	51, 389, 569, 776, 788, 964
Ecl136II	GAGCTC	1 cut(s)	1169
Eco130I	CCWWGG	5 cut(s)	163, 921, 998, 1013, 1079
Eco24I	GRGCYC	2 cut(s)	1079, 1171
Eco47I	GGWCC	2 cut(s)	295, 532
Eco53kI	GAGCTC	1 cut(s)	1169
Eco57I	CTGAAG	2 cut(s)	1010, 1068
Eco88I	CYCGRG	1 cut(s)	475
EcoICRI	GAGCTC	1 cut(s)	1169
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	1208
EcoRII	CCWGG	4 cut(s)	516, 941, 1180, 1307
EcoT14I	CCWWGG	5 cut(s)	163, 921, 998, 1013, 1079
EcoT38I	GRGCYC	2 cut(s)	1079, 1171
ErhI	CCWWGG	5 cut(s)	163, 921, 998, 1013, 1079
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	9 cut(s)	805, 925, 1017, 1038, 1083, 1216, 1300, 1405, 1477
FalI	AAGNNNNNCTT	2 cut(s)	1510, 1542
FaqI	GGGAC	4 cut(s)	458, 587, 610, 1601
FatI	CATG	9 cut(s)	801, 921, 1013, 1034, 1079, 1212, 1296, 1401, 1473
FauI	CCCGC	2 cut(s)	510, 587
FokI	GGATG	6 cut(s)	113, 303, 916, 958, 1052, 1381
FriOI	GRGCYC	2 cut(s)	1079, 1171
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	4 cut(s)	57, 109, 361, 795
GsaI	CCCAGC	3 cut(s)	235, 837, 903
GsuI	CTGGAG	3 cut(s)	649, 750, 925
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	168, 842, 920, 997, 1312
HapII	CCGG	9 cut(s)	111, 203, 330, 530, 604, 624, 663, 986, 1227
HgaI	GACGC	2 cut(s)	547, 699
HhaI	GCGC	4 cut(s)	58, 110, 362, 796
Hin1II	CATG	9 cut(s)	805, 925, 1017, 1038, 1083, 1216, 1300, 1405, 1477
Hin6I	GCGC	4 cut(s)	56, 108, 360, 794
HinP1I	GCGC	4 cut(s)	56, 108, 360, 794
HincII	GTYRAC	2 cut(s)	1090, 1428
HindII	GTYRAC	2 cut(s)	1090, 1428
HindIII	AAGCTT	1 cut(s)	1695
HpaII	CCGG	9 cut(s)	111, 203, 330, 530, 604, 624, 663, 986, 1227
HphI	GGTGA	8 cut(s)	8, 115, 335, 541, 610, 746, 865, 1084
Hpy166II	GTNNAC	7 cut(s)	151, 325, 1090, 1374, 1428, 1451, 1460
Hpy188I	TCNGA	8 cut(s)	445, 715, 828, 1166, 1368, 1517, 1545, 1626
Hpy188III	TCNNGA	9 cut(s)	330, 433, 475, 535, 729, 913, 986, 1199, 1213
Hpy8I	GTNNAC	7 cut(s)	151, 325, 1090, 1374, 1428, 1451, 1460
Hpy99I	CGWCG	5 cut(s)	293, 398, 662, 705, 715
HpyAV	CCTTC	8 cut(s)	450, 850, 868, 877, 997, 1119, 1137, 1553
HpyCH4III	ACNGT	3 cut(s)	20, 1141, 1592
HpyCH4IV	ACGT	2 cut(s)	700, 724
HpyCH4V	TGCA	6 cut(s)	559, 1057, 1100, 1300, 1374, 1500
HpyF3I	CTNAG	8 cut(s)	356, 426, 522, 1065, 1190, 1409, 1431, 1684
HpySE526I	ACGT	2 cut(s)	700, 724
Hsp92II	CATG	9 cut(s)	805, 925, 1017, 1038, 1083, 1216, 1300, 1405, 1477
HspAI	GCGC	4 cut(s)	56, 108, 360, 794
Kpn2I	TCCGGA	2 cut(s)	329, 985
KroI	GCCGGC	2 cut(s)	110, 662
KroNI	GCCGGC	2 cut(s)	112, 664
KspI	CCGCGG	2 cut(s)	372, 595
Kzo9I	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
LmnI	GCTCC	6 cut(s)	205, 312, 630, 1174, 1229, 1304
Lsp1109I	GCAGC	4 cut(s)	82, 766, 1173, 1244
LweI	GCATC	5 cut(s)	261, 436, 642, 1109, 1558
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	2 cut(s)	700, 724
MaeIII	GTNAC	5 cut(s)	20, 121, 547, 734, 1030
MalI	GATC	5 cut(s)	279, 431, 1009, 1317, 1641
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
MboII	GAAGA	6 cut(s)	200, 963, 1106, 1217, 1429, 1530
MflI	RGATCY	4 cut(s)	429, 1007, 1315, 1639
MhlI	GDGCHC	4 cut(s)	965, 1079, 1171, 1376
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	5 cut(s)	10, 1208, 1237, 1253, 1357
MluNI	TGGCCA	1 cut(s)	920
MlyI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 918, 929, 1689
MmeI	TCCRAC	2 cut(s)	693, 1495
Mox20I	TGGCCA	1 cut(s)	920
MreI	CGCCGGCG	1 cut(s)	662
MroI	TCCGGA	2 cut(s)	329, 985
MroNI	GCCGGC	2 cut(s)	110, 662
MroXI	GAANNNNTTC	1 cut(s)	1522
MscI	TGGCCA	1 cut(s)	920
MseI	TTAA	3 cut(s)	510, 744, 1349
Msp20I	TGGCCA	1 cut(s)	920
MspA1I	CMGCKG	3 cut(s)	371, 594, 1688
MspI	CCGG	9 cut(s)	111, 203, 330, 530, 604, 624, 663, 986, 1227
MspR9I	CCNGG	5 cut(s)	518, 604, 943, 1182, 1309
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	4 cut(s)	518, 943, 1182, 1309
MvnI	CGCG	4 cut(s)	56, 351, 371, 594
NaeI	GCCGGC	2 cut(s)	112, 664
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	3 cut(s)	921, 1013, 1079
NdeII	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
NgoMIV	GCCGGC	2 cut(s)	110, 662
NlaIII	CATG	9 cut(s)	805, 925, 1017, 1038, 1083, 1216, 1300, 1405, 1477
NlaIV	GGNNCC	3 cut(s)	1009, 1306, 1490
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	4 cut(s)	20, 121, 547, 734
NspI	RCATGY	2 cut(s)	805, 1300
PaeI	GCATGC	1 cut(s)	1300
PagI	TCATGA	1 cut(s)	1212
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 402, 663
PctI	GAATGC	1 cut(s)	1066
PdiI	GCCGGC	2 cut(s)	112, 664
PdmI	GAANNNNTTC	1 cut(s)	1522
PfeI	GAWTC	2 cut(s)	1161, 1177
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	96, 627
PfoI	TCCNGGA	1 cut(s)	941
PleI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 917, 929, 1688
PpsI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 917, 929, 1688
PpuMI	RGGWCCY	1 cut(s)	295
PshAI	GACNNNNGTC	1 cut(s)	1511
PsiI	TTATAA	1 cut(s)	1223
Psp124BI	GAGCTC	1 cut(s)	1171
Psp1406I	AACGTT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	4 cut(s)	516, 941, 1180, 1307
PspFI	CCCAGC	3 cut(s)	231, 833, 899
PspGI	CCWGG	4 cut(s)	516, 941, 1180, 1307
PspN4I	GGNNCC	3 cut(s)	1009, 1306, 1490
PspPI	GGNCC	4 cut(s)	295, 532, 840, 995
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	1059
PsuI	RGATCY	4 cut(s)	429, 1007, 1315, 1639
PsyI	GACNNNGTC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	1688
RsaI	GTAC	3 cut(s)	699, 1582, 1702
RsaNI	GTAC	3 cut(s)	698, 1581, 1701
SacI	GAGCTC	1 cut(s)	1171
SacII	CCGCGG	2 cut(s)	372, 595
SaqAI	TTAA	3 cut(s)	510, 744, 1349
Sau3AI	GATC	5 cut(s)	277, 429, 1007, 1315, 1639
Sau96I	GGNCC	4 cut(s)	295, 532, 840, 995
SchI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 918, 929, 1689
ScrFI	CCNGG	5 cut(s)	518, 604, 943, 1182, 1309
SduI	GDGCHC	4 cut(s)	965, 1079, 1171, 1376
SfaNI	GCATC	5 cut(s)	261, 436, 642, 1109, 1558
SfcI	CTRYAG	1 cut(s)	1055
Sfr303I	CCGCGG	2 cut(s)	372, 595
SgrAI	CRCCGGYG	1 cut(s)	662
SgrBI	CCGCGG	2 cut(s)	372, 595
SinI	GGWCC	2 cut(s)	295, 532
SphI	GCATGC	1 cut(s)	1300
Sse9I	AATT	5 cut(s)	10, 1208, 1237, 1253, 1357
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	1171
StyD4I	CCNGG	5 cut(s)	516, 602, 941, 1180, 1307
StyI	CCWWGG	5 cut(s)	163, 921, 998, 1013, 1079
TaaI	ACNGT	3 cut(s)	20, 1141, 1592
TaiI	ACGT	2 cut(s)	703, 727
TaqI	TCGA	6 cut(s)	84, 174, 494, 1198, 1505, 1678
TasI	AATT	5 cut(s)	10, 1208, 1237, 1253, 1357
TatI	WGTACW	2 cut(s)	1580, 1700
TfiI	GAWTC	2 cut(s)	1161, 1177
Tru1I	TTAA	3 cut(s)	510, 744, 1349
Tru9I	TTAA	3 cut(s)	510, 744, 1349
TscAI	CASTG	1 cut(s)	1179
TseFI	GTSAC	4 cut(s)	20, 121, 547, 734
TseI	GCWGC	4 cut(s)	70, 779, 1186, 1232
Tsp45I	GTSAC	4 cut(s)	20, 121, 547, 734
TspDTI	ATGAA	6 cut(s)	1056, 1106, 1124, 1201, 1368, 1626
TspGWI	ACGGA	3 cut(s)	109, 535, 661
TspRI	CASTG	1 cut(s)	1179
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	2 cut(s)	96, 627
VneI	GTGCAC	1 cut(s)	1372
VpaK11BI	GGWCC	2 cut(s)	295, 532
XapI	RAATTY	2 cut(s)	1208, 1357
XceI	RCATGY	2 cut(s)	805, 1300
XmnI	GAANNNNTTC	1 cut(s)	1522
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.