Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 1 cut(s) | 26 |
| AclWI | GGATC | 1 cut(s) | 276 |
| AfaI | GTAC | 3 cut(s) | 38, 236, 331 |
| AgsI | TTSAA | 6 cut(s) | 16, 161, 182, 188, 293, 323 |
| AluBI | AGCT | 1 cut(s) | 326 |
| AluI | AGCT | 1 cut(s) | 326 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 1 cut(s) | 276 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 2 cut(s) | 60, 227 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BccI | CCATC | 1 cut(s) | 107 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BmiI | GGNNCC | 2 cut(s) | 6, 119 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 50 |
| Bse1I | ACTGG | 2 cut(s) | 217, 270 |
| BseDI | CCNNGG | 2 cut(s) | 8, 50 |
| BseGI | GGATG | 1 cut(s) | 27 |
| BseMII | CTCAG | 1 cut(s) | 21 |
| BseNI | ACTGG | 2 cut(s) | 217, 270 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| Bsp1407I | TGTACA | 1 cut(s) | 36 |
| Bsp143I | GATC | 2 cut(s) | 58, 268 |
| BspCNI | CTCAG | 1 cut(s) | 22 |
| BspLI | GGNNCC | 2 cut(s) | 6, 119 |
| BspPI | GGATC | 1 cut(s) | 276 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrGI | TGTACA | 1 cut(s) | 36 |
| BsrI | ACTGG | 2 cut(s) | 217, 270 |
| BssECI | CCNNGG | 2 cut(s) | 8, 50 |
| BssMI | GATC | 2 cut(s) | 58, 268 |
| BssT1I | CCWWGG | 1 cut(s) | 8 |
| Bst4CI | ACNGT | 2 cut(s) | 54, 221 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstAUI | TGTACA | 1 cut(s) | 36 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstF5I | GGATG | 1 cut(s) | 27 |
| BstKTI | GATC | 2 cut(s) | 61, 271 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 2 cut(s) | 58, 268 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| Csp6I | GTAC | 3 cut(s) | 37, 235, 330 |
| CviAII | CATG | 1 cut(s) | 103 |
| CviJI | RGCY | 2 cut(s) | 78, 326 |
| CviKI_1 | RGCY | 2 cut(s) | 78, 326 |
| CviQI | GTAC | 3 cut(s) | 37, 235, 330 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 2 cut(s) | 60, 270 |
| DpnII | GATC | 2 cut(s) | 58, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 1 cut(s) | 8 |
| EcoT14I | CCWWGG | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 8 |
| FaeI | CATG | 1 cut(s) | 106 |
| FaiI | YATR | 3 cut(s) | 104, 230, 279 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 139, 171 |
| FatI | CATG | 1 cut(s) | 102 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FblI | GTMKAC | 1 cut(s) | 26 |
| FokI | GGATG | 1 cut(s) | 34 |
| Hin1II | CATG | 1 cut(s) | 106 |
| HindIII | AAGCTT | 1 cut(s) | 324 |
| HinfI | GANTC | 1 cut(s) | 309 |
| HphI | GGTGA | 2 cut(s) | 60, 227 |
| Hpy166II | GTNNAC | 3 cut(s) | 27, 50, 89 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 146, 174 |
| Hpy8I | GTNNAC | 3 cut(s) | 27, 50, 89 |
| HpyAV | CCTTC | 1 cut(s) | 182 |
| HpyCH4III | ACNGT | 2 cut(s) | 54, 221 |
| HpyCH4V | TGCA | 2 cut(s) | 129, 210 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| Hsp92II | CATG | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 2 cut(s) | 58, 268 |
| LpnPI | CCDG | 4 cut(s) | 84, 92, 198, 251 |
| MaeIII | GTNAC | 1 cut(s) | 215 |
| MalI | GATC | 2 cut(s) | 60, 270 |
| MboI | GATC | 2 cut(s) | 58, 268 |
| MboII | GAAGA | 2 cut(s) | 28, 159 |
| MfeI | CAATTG | 1 cut(s) | 315 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MluCI | AATT | 3 cut(s) | 62, 161, 315 |
| MlyI | GAGTC | 1 cut(s) | 318 |
| MmeI | TCCRAC | 1 cut(s) | 124 |
| MnlI | CCTC | 1 cut(s) | 12 |
| MroXI | GAANNNNTTC | 1 cut(s) | 151 |
| MunI | CAATTG | 1 cut(s) | 315 |
| NdeII | GATC | 2 cut(s) | 58, 268 |
| NlaIII | CATG | 1 cut(s) | 106 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 119 |
| NmuCI | GTSAC | 1 cut(s) | 215 |
| PdmI | GAANNNNTTC | 1 cut(s) | 151 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 119 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| RsaI | GTAC | 3 cut(s) | 38, 236, 331 |
| RsaNI | GTAC | 3 cut(s) | 37, 235, 330 |
| Sau3AI | GATC | 2 cut(s) | 58, 268 |
| SchI | GAGTC | 1 cut(s) | 318 |
| SetI | ASST | 4 cut(s) | 14, 144, 193, 328 |
| Sse9I | AATT | 3 cut(s) | 62, 161, 315 |
| StyI | CCWWGG | 1 cut(s) | 8 |
| TaaI | ACNGT | 2 cut(s) | 54, 221 |
| TaqI | TCGA | 1 cut(s) | 307 |
| TasI | AATT | 3 cut(s) | 62, 161, 315 |
| TatI | WGTACW | 2 cut(s) | 36, 329 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseFI | GTSAC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 1 cut(s) | 215 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XmiI | GTMKAC | 1 cut(s) | 26 |
| XmnI | GAANNNNTTC | 1 cut(s) | 151 |