Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

54693610 .. 54698274

Gene Structure 4665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGTGGGATGAGAGTCAAGATGACCATGGAGACTGATGACTCGAATTGGTTTCAGGGCACTCTGTCTTCCACCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCTCCATGGCGAGTGCTTCAGGTTACATGGGATGAATCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTATATCCCCCCACAAAGAGACTCAGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

5.8

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	3 - 65	1.1e-20	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	82
AclWI	GGATC	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	107, 165
AfiI	CCNNNNNNNGG	2 cut(s)	89, 101
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	26, 232
AlwI	GGATC	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	176, 250
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	26, 232
BfmI	CTRYAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	60
BsaJI	CCNNGG	5 cut(s)	27, 95, 110, 176, 260
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 101
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	5 cut(s)	27, 95, 110, 176, 260
BseGI	GGATG	2 cut(s)	15, 142
BseLI	CCNNNNNNNGG	2 cut(s)	89, 101
BseMII	CTCAG	2 cut(s)	256, 260
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	89, 101
BsmAI	GTCTC	2 cut(s)	26, 232
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	3 cut(s)	62, 176, 250
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	3 cut(s)	27, 110, 176
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	255, 261
BspEI	TCCGGA	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	112
BssECI	CCNNGG	5 cut(s)	27, 95, 110, 176, 260
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	4 cut(s)	27, 95, 110, 176
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	162, 242, 269
BstDSI	CCRYGG	3 cut(s)	27, 110, 176
BstF5I	GGATG	2 cut(s)	15, 142
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	26, 232
BstMBI	GATC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	3 cut(s)	27, 110, 176
BtsCI	GGATG	2 cut(s)	15, 142
BtsIMutI	CAGTG	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	92
CviAII	CATG	4 cut(s)	28, 111, 132, 177
CviJI	RGCY	4 cut(s)	94, 174, 248, 265
CviKI_1	RGCY	4 cut(s)	94, 174, 248, 265
DdeI	CTNAG	3 cut(s)	162, 242, 269
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	4 cut(s)	27, 95, 110, 176
Eco24I	GRGCYC	2 cut(s)	176, 250
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	107, 165
EcoICRI	GAGCTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	4 cut(s)	27, 95, 110, 176
EcoT38I	GRGCYC	2 cut(s)	176, 250
ErhI	CCWWGG	4 cut(s)	27, 95, 110, 176
FaeI	CATG	4 cut(s)	31, 114, 135, 180
FaiI	YATR	6 cut(s)	29, 112, 133, 178, 216, 223
FatI	CATG	4 cut(s)	27, 110, 131, 176
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	2 cut(s)	22, 149
FriOI	GRGCYC	2 cut(s)	176, 250
Fsp4HI	GCNGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	31, 114, 135, 180
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	5 cut(s)	15, 41, 140, 240, 256
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	145, 245
Hpy188III	TCNNGA	2 cut(s)	19, 83
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	94, 216
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	154, 197
HpyF3I	CTNAG	3 cut(s)	162, 242, 269
Hsp92II	CATG	4 cut(s)	31, 114, 135, 180
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	41, 96, 110, 246, 273
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	2 cut(s)	60, 203
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	3 cut(s)	62, 176, 250
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	3 cut(s)	24, 35, 234
MnlI	CCTC	2 cut(s)	159, 274
MroI	TCCGGA	1 cut(s)	82
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	261
NcoI	CCATGG	3 cut(s)	27, 110, 176
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	4 cut(s)	31, 114, 135, 180
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	140, 256
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	3 cut(s)	23, 35, 234
PpsI	GAGTC	3 cut(s)	23, 35, 234
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	250
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	3 cut(s)	24, 35, 234
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	62, 176, 250
SetI	ASST	4 cut(s)	77, 129, 208, 250
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	46
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	4 cut(s)	27, 95, 110, 176
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	140, 256
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	153, 203
TspRI	CASTG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.