Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030169.1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2145

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 833 bp

gcagaggtggtggagaaagcattgaaggttttttggacggctgggatgagagtcaagatggcatggagactgatgactcgtccaggatgacttggattcagggcactctgtcttcagcctttgttcctgagaatgggtcttatccccatggcgttacatgggatgaacctgaagttctgcagaatgctaagagggtgagcccatggcaagttgactttgttgcatcaacaccttctcttcatacagtaccttcgcttcatactgtatatccccccacaaagagactcagaactctactgaatcccggtctgctgagaattgaaggggaagaattcatgatccctatgactggagcagctaattcaacaatggggcaattcaattcttccttgttgaactataacatttttcctgctggcatgcagggagccaggcaagatctattctgtgtatccaatgtatctcatttcttaaataaaaattctcctcggatgtgcacctataattcctttggcaacaacaacatggtgtcaagattgatgagggtctctactgagttgaacattggtagtccacagtctgatcaattatcaccagatagccagagtagtccgcattcctttggcatggaacttgatgggaaccgaaacggcaactcgacatttgtcggaagaagttcttttcaactctttggtcagaccattcaactcaaaggtattgatgctgttggttgcactggggacggtggcaatatagggtacaatgaaactgaacttctgaacaaccaactggatctttcttatgccaaactgcttgaaaggattgatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

276

Amino Acids

30.27

Weight (kDa)

4.77

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	2 cut(s)	333, 800
AcsI	RAATTY	2 cut(s)	331, 480
AcuI	CTGAAG	2 cut(s)	98, 191
AfaI	GTAC	2 cut(s)	248, 760
AfiI	CCNNNNNNNGG	2 cut(s)	133, 349
AgsI	TTSAA	9 cut(s)	25, 322, 365, 381, 396, 561, 685, 706, 817
AjnI	CCWGG	2 cut(s)	82, 430
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	3 cut(s)	61, 276, 552
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	333, 800
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	331, 480
Asp700I	GAANNNNTTC	1 cut(s)	675
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	207, 584
BaeGI	GKGCMC	2 cut(s)	106, 499
BanII	GRGCYC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	52, 631
BceAI	ACGGC	2 cut(s)	54, 666
BciT130I	CCWGG	2 cut(s)	84, 432
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	3 cut(s)	61, 276, 552
BfmI	CTRYAG	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	84, 305, 432
BmiI	GGNNCC	2 cut(s)	429, 643
BmrFI	CCNGG	3 cut(s)	84, 305, 432
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	2 cut(s)	232, 711
BmuI	ACTGGG	1 cut(s)	746
BoxI	GACNNNNGTC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	147, 202, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 349
Bse1I	ACTGG	3 cut(s)	354, 741, 794
BseBI	CCWGG	2 cut(s)	84, 432
BseDI	CCNNGG	3 cut(s)	147, 202, 487
BseGI	GGATG	4 cut(s)	51, 92, 168, 497
BseLI	CCNNNNNNNGG	2 cut(s)	133, 349
BseMII	CTCAG	4 cut(s)	119, 300, 304, 545
BseNI	ACTGG	3 cut(s)	354, 741, 794
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	2 cut(s)	106, 499
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	133, 349
BsmAI	GTCTC	3 cut(s)	61, 276, 552
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	2 cut(s)	189, 615
Bso31I	GGTCTC	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	106, 202, 499
Bsp143I	GATC	4 cut(s)	338, 438, 582, 792
Bsp19I	CCATGG	2 cut(s)	147, 202
BspACI	CCGC	1 cut(s)	613
BspCNI	CTCAG	4 cut(s)	120, 299, 305, 546
BspHI	TCATGA	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	429, 643
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	2 cut(s)	333, 800
BspTNI	GGTCTC	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	354, 741, 794
BssECI	CCNNGG	3 cut(s)	147, 202, 487
BssMI	GATC	4 cut(s)	338, 438, 582, 792
BssT1I	CCWWGG	2 cut(s)	147, 202
Bst2UI	CCWGG	2 cut(s)	84, 432
Bst4CI	ACNGT	4 cut(s)	246, 264, 578, 745
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	417, 421
BstDEI	CTNAG	5 cut(s)	128, 188, 286, 313, 554
BstDSI	CCRYGG	2 cut(s)	147, 202
BstF5I	GGATG	4 cut(s)	51, 92, 168, 497
BstKTI	GATC	4 cut(s)	341, 441, 585, 795
BstMAI	GTCTC	3 cut(s)	61, 276, 552
BstMBI	GATC	4 cut(s)	338, 438, 582, 792
BstNI	CCWGG	2 cut(s)	84, 432
BstNSI	RCATGY	1 cut(s)	423
BstPAI	GACNNNNGTC	1 cut(s)	664
BstSCI	CCNGG	3 cut(s)	82, 303, 430
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	106, 499
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	438, 792
BstYI	RGATCY	2 cut(s)	438, 792
BsuI	GTATCC	1 cut(s)	462
BtgI	CCRYGG	2 cut(s)	147, 202
BtsCI	GGATG	4 cut(s)	51, 92, 168, 497
BtsIMutI	CAGTG	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	417, 421
CciI	TCATGA	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	247, 759
CviAII	CATG	8 cut(s)	63, 148, 158, 203, 336, 420, 525, 627
CviJI	RGCY	6 cut(s)	41, 118, 200, 358, 430, 602
CviKI_1	RGCY	6 cut(s)	41, 118, 200, 358, 430, 602
CviQI	GTAC	2 cut(s)	247, 759
DdeI	CTNAG	5 cut(s)	128, 188, 286, 313, 554
DpnI	GATC	4 cut(s)	340, 440, 584, 794
DpnII	GATC	4 cut(s)	338, 438, 582, 792
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	147, 202
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	98, 191
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	82, 430
EcoT14I	CCWWGG	2 cut(s)	147, 202
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	147, 202
FaeI	CATG	8 cut(s)	66, 151, 161, 206, 339, 423, 528, 630
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	8 cut(s)	62, 147, 157, 202, 335, 419, 524, 626
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	4 cut(s)	58, 99, 175, 504
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	371
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	8 cut(s)	66, 151, 161, 206, 339, 423, 528, 630
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	5 cut(s)	51, 76, 96, 284, 300
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	207, 584
Hpy166II	GTNNAC	3 cut(s)	213, 497, 574
Hpy188I	TCNGA	6 cut(s)	289, 491, 582, 670, 698, 779
Hpy188III	TCNNGA	4 cut(s)	55, 127, 336, 533
Hpy8I	GTNNAC	3 cut(s)	213, 497, 574
HpyAV	CCTTC	4 cut(s)	19, 242, 260, 316
HpyCH4III	ACNGT	4 cut(s)	246, 264, 578, 745
HpyCH4V	TGCA	5 cut(s)	180, 223, 423, 497, 734
HpyF3I	CTNAG	5 cut(s)	128, 188, 286, 313, 554
Hsp92II	CATG	8 cut(s)	66, 151, 161, 206, 339, 423, 528, 630
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	338, 438, 582, 792
LmnI	GCTCC	2 cut(s)	352, 427
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	232, 711
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	4 cut(s)	340, 440, 584, 794
MboI	GATC	4 cut(s)	338, 438, 582, 792
MboII	GAAGA	5 cut(s)	104, 229, 340, 377, 683
MflI	RGATCY	2 cut(s)	438, 792
MhlI	GDGCHC	3 cut(s)	106, 202, 499
MluCI	AATT	8 cut(s)	317, 331, 360, 376, 381, 480, 504, 586
MlyI	GAGTC	3 cut(s)	60, 70, 278
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	3 cut(s)	185, 497, 536
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	1 cut(s)	472
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	84, 305, 432
Mva1269I	GAATGC	2 cut(s)	189, 615
MvaI	CCWGG	2 cut(s)	84, 432
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	2 cut(s)	147, 202
NdeII	GATC	4 cut(s)	338, 438, 582, 792
NlaIII	CATG	8 cut(s)	66, 151, 161, 206, 339, 423, 528, 630
NlaIV	GGNNCC	2 cut(s)	429, 643
NspI	RCATGY	1 cut(s)	423
PaeI	GCATGC	1 cut(s)	423
PagI	TCATGA	1 cut(s)	335
PctI	GAATGC	2 cut(s)	189, 615
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	96, 300
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	3 cut(s)	59, 70, 278
PpsI	GAGTC	3 cut(s)	59, 70, 278
PshAI	GACNNNNGTC	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	82, 430
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	82, 430
PspN4I	GGNNCC	2 cut(s)	429, 643
PstI	CTGCAG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	438, 792
RsaI	GTAC	2 cut(s)	248, 760
RsaNI	GTAC	2 cut(s)	247, 759
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	338, 438, 582, 792
SchI	GAGTC	3 cut(s)	60, 70, 278
ScrFI	CCNGG	3 cut(s)	84, 305, 432
SduI	GDGCHC	3 cut(s)	106, 202, 499
SetI	ASST	8 cut(s)	9, 30, 171, 234, 252, 360, 502, 717
SfaNI	GCATC	2 cut(s)	232, 711
SfcI	CTRYAG	1 cut(s)	178
SphI	GCATGC	1 cut(s)	423
Sse9I	AATT	8 cut(s)	317, 331, 360, 376, 381, 480, 504, 586
SsiI	CCGC	1 cut(s)	613
StyD4I	CCNGG	3 cut(s)	82, 303, 430
StyI	CCWWGG	2 cut(s)	147, 202
TaaI	ACNGT	4 cut(s)	246, 264, 578, 745
TaqI	TCGA	1 cut(s)	658
TasI	AATT	8 cut(s)	317, 331, 360, 376, 381, 480, 504, 586
TfiI	GAWTC	2 cut(s)	96, 300
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	741
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	5 cut(s)	179, 229, 247, 324, 779
TspRI	CASTG	1 cut(s)	741
VneI	GTGCAC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	331, 480
XceI	RCATGY	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.