Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000842

Physical Location & Seq

Genomic Coordinates Reverse (-)

8744097 .. 8747307

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATGTTCTTCAAGGCCGCACGGATTGCCCATGGCGTATCAAAGTTCTGGTCCAGTATATCCAAACCATATCTCACCAGTTCCGATCTGTCTCCTTCAGACATATTTGGAGAGAAGCTAATTTTCTAGCGGATACATTAGTGAATTTAGTCTCCACCACGTTCCCTGCAAAGAATCTCGTCGCTACTAATCCTTTCAACTTGAAAAATCATGAAAAAAAACATGGGACTTGTCCCCGCCACCCTTCTTGCTCCGTGAGAACTCCGGCGGTGAAAATCGCCGCCATCCAACCCGGCGACGCCGGAGAATACCCACTTGGCCCGTCGACGGGAGCTGCGGAGGCCTTGGTGGTGGGTTTGTGGAAGTTGGAAGAGGGGAGGAGGAGGATGATCGAGCTTGGTGTTGGTTGTGGACTTGTGGTGGTGGTGGTCTTCATTGGGGGAGTCATTGCACTGAAGGGTGGGGATGAGAACAAGGAAGTAAAGACGGGAGCAAATTTTTCTGATGCAGTTGAGGCCACTGTACCAGCAGTTGGAATCCACAACAATCTTAGCCCATTCATGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCAGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTGTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

220

Amino Acids

23.86

Weight (kDa)

5.1

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	3 - 49	5.8e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica	MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica	Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis	pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis	RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora	Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana	Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	6 cut(s)	19, 131, 238, 269, 282, 338
AcsI	RAATTY	2 cut(s)	145, 496
AcuI	CTGAAG	2 cut(s)	82, 476
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	3 cut(s)	328, 329, 533
AgsI	TTSAA	3 cut(s)	14, 199, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	119, 335, 397
AluI	AGCT	3 cut(s)	119, 335, 397
Alw26I	GTCTC	2 cut(s)	97, 157
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	4 cut(s)	16, 319, 342, 516
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	145, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AspS9I	GGNCC	2 cut(s)	52, 320
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	68, 283
AvaII	GGWCC	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	97, 157
BfaI	CTAG	2 cut(s)	128, 620
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	19, 282, 336
BlsI	GCNGC	3 cut(s)	20, 283, 337
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	52, 320
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	32, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 329, 533
Bse1I	ACTGG	2 cut(s)	55, 79
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	32, 345
BseGI	GGATG	5 cut(s)	10, 285, 393, 472, 601
BseLI	CCNNNNNNNGG	3 cut(s)	328, 329, 533
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	55, 79
BseRI	GAGGAG	2 cut(s)	394, 397
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	4 cut(s)	18, 321, 344, 518
BsiSI	CCGG	3 cut(s)	266, 294, 303
BslFI	GGGAC	2 cut(s)	219, 241
BslI	CCNNNNNNNGG	3 cut(s)	328, 329, 533
BsmAI	GTCTC	2 cut(s)	97, 157
BsmFI	GGGAC	2 cut(s)	219, 241
BsnI	GGCC	4 cut(s)	18, 321, 344, 518
Bsp143I	GATC	2 cut(s)	86, 390
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	6 cut(s)	19, 131, 238, 269, 282, 338
BspANI	GGCC	4 cut(s)	18, 321, 344, 518
BspHI	TCATGA	2 cut(s)	211, 561
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	55, 79
BssECI	CCNNGG	2 cut(s)	32, 345
BssMI	GATC	2 cut(s)	86, 390
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	2 cut(s)	32, 345
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	551, 601
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	5 cut(s)	10, 285, 393, 472, 601
BstKTI	GATC	2 cut(s)	89, 393
BstMAI	GTCTC	2 cut(s)	97, 157
BstMBI	GATC	2 cut(s)	86, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 341, 515
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	18, 321, 344, 518
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	5 cut(s)	10, 285, 393, 472, 601
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	452, 519, 640
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	2 cut(s)	211, 561
Cfr13I	GGNCC	2 cut(s)	52, 320
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	524
CspCI	CAANNNNNGTGG	2 cut(s)	230, 265
CviAII	CATG	5 cut(s)	33, 212, 224, 562, 580
CviJI	RGCY	8 cut(s)	18, 119, 321, 335, 344, 397, 518, 555
CviKI_1	RGCY	8 cut(s)	18, 119, 321, 335, 344, 397, 518, 555
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	2 cut(s)	551, 601
DpnI	GATC	2 cut(s)	88, 392
DpnII	GATC	2 cut(s)	86, 390
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	32, 345
Eco147I	AGGCCT	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	82, 476
EcoT14I	CCWWGG	2 cut(s)	32, 345
ErhI	CCWWGG	2 cut(s)	32, 345
FaeI	CATG	5 cut(s)	36, 215, 227, 565, 583
FaqI	GGGAC	2 cut(s)	219, 241
FatI	CATG	5 cut(s)	32, 211, 223, 561, 579
FauI	CCCGC	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	19, 282, 336
FokI	GGATG	5 cut(s)	17, 272, 400, 479, 608
Fsp4HI	GCNGC	3 cut(s)	19, 282, 336
FspBI	CTAG	2 cut(s)	128, 620
GluI	GCNGC	3 cut(s)	19, 282, 336
HaeIII	GGCC	4 cut(s)	18, 321, 344, 518
HapII	CCGG	3 cut(s)	266, 294, 303
HgaI	GACGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	36, 215, 227, 565, 583
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	5 cut(s)	175, 444, 537, 605, 611
HpaII	CCGG	3 cut(s)	266, 294, 303
HphI	GGTGA	2 cut(s)	68, 283
Hpy166II	GTNNAC	2 cut(s)	327, 413
Hpy188I	TCNGA	5 cut(s)	86, 101, 505, 610, 616
Hpy188III	TCNNGA	2 cut(s)	212, 562
Hpy8I	GTNNAC	2 cut(s)	327, 413
Hpy99I	CGWCG	4 cut(s)	185, 302, 328, 331
HpyAV	CCTTC	3 cut(s)	106, 255, 451
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	170, 452, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 341, 515
HpyF3I	CTNAG	2 cut(s)	551, 601
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	36, 215, 227, 565, 583
Kzo9I	GATC	2 cut(s)	86, 390
LmnI	GCTCC	3 cut(s)	257, 332, 491
LpnPI	CCDG	8 cut(s)	35, 68, 92, 180, 279, 307, 316, 540
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	128, 620
MaeII	ACGT	1 cut(s)	161
MalI	GATC	2 cut(s)	88, 392
MboI	GATC	2 cut(s)	86, 390
MboII	GAAGA	2 cut(s)	383, 424
MluCI	AATT	4 cut(s)	121, 145, 496, 571
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	3 cut(s)	313, 348, 514
MnlI	CCTC	6 cut(s)	334, 367, 372, 375, 378, 508
MseI	TTAA	1 cut(s)	658
MspI	CCGG	3 cut(s)	266, 294, 303
MspR9I	CCNGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	27, 341, 515
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	86, 390
NlaIII	CATG	5 cut(s)	36, 215, 227, 565, 583
PagI	TCATGA	2 cut(s)	211, 561
PceI	AGGCCT	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	175, 537, 605, 611
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	20, 283, 337
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	52, 320
PstNI	CAGNNNCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SalI	GTCGAC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	3 cut(s)	19, 282, 336
Sau3AI	GATC	2 cut(s)	86, 390
Sau96I	GGNCC	2 cut(s)	52, 320
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	4 cut(s)	121, 164, 337, 399
SfaNI	GCATC	1 cut(s)	496
SgrDI	CGTCGACG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	4 cut(s)	121, 145, 496, 571
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	6 cut(s)	19, 131, 238, 269, 282, 338
SspMI	CTAG	2 cut(s)	128, 620
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	32, 345
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	326, 393
TasI	AATT	4 cut(s)	121, 145, 496, 571
TauI	GCSGC	2 cut(s)	21, 284
TfiI	GAWTC	4 cut(s)	175, 537, 605, 611
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	3 cut(s)	459, 526, 640
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	4 cut(s)	228, 424, 550, 578
TspGWI	ACGGA	2 cut(s)	38, 244
TspRI	CASTG	3 cut(s)	459, 526, 640
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	145, 496
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	2 cut(s)	128, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.