Rroxscaffold_7G00215920

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000842
Physical Location & Seq
Forward (+)
66565763 .. 66570112
4350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215920.1

Sequence Viewer

Length: 411 bp
ATGTTCTGCAATGATGCAAAAGAGTTTATTATACATGTTCAAAGGTATTGCTTTGAAATCACCGCTTTCATCTCCGGTAGACAGATACAGGACAACATTTTGGTGGCCCATGAACTGTTTCACCATCTAAAGCTTCTTAAGTCAAGCTCGGTTGGGGAATTTGCAATTAAATTAGACATGAACAAGGCCTATGATCGAGTGGTTTGGAAGTTCTTAGAGCTGGTTCTACTCAAGATGCGATTCCACCAAAATTGGGTGAGATTGGTAATGTCTTGTGTTACTTCGTTTCAATGGCTATTATCGTCAATAGAGCTCCAGGACGCAAATTCAAACCAACCCGTGGTCTACGCCAAGGAGATCCTCTCTCCCCTTTCCTTTTCCTTTTCATCAATGATGTTTTGTCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

136

Amino Acids

15.93

Weight (kDa)

7.72

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 79, 345
AciI CCGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 2 cut(s) 158, 325
AfiI CCNNNNNNNGG 2 cut(s) 253, 340
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 4 cut(s) 41, 56, 290, 330
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 133, 147, 220, 313
AluI AGCT 4 cut(s) 133, 147, 220, 313
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 1 cut(s) 352
AoxI GGCC 2 cut(s) 105, 186
ApoI RAATTY 2 cut(s) 158, 325
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 3 cut(s) 52, 113, 268
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 4, 225
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 339, 351
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 340
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 339, 351
BseLI CCNNNNNNNGG 2 cut(s) 253, 340
BseMI GCAATG 1 cut(s) 16
BshFI GGCC 2 cut(s) 107, 188
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 253, 340
BsnI GGCC 2 cut(s) 107, 188
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 193, 357
BspACI CCGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 107, 188
BspPI GGATC 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 339, 351
BssMI GATC 2 cut(s) 193, 357
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 339
BstKTI GATC 2 cut(s) 196, 360
BstMBI GATC 2 cut(s) 193, 357
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 2 cut(s) 107, 188
BtgI CCRYGG 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 4 cut(s) 35, 110, 178, 408
CviJI RGCY 7 cut(s) 107, 133, 147, 188, 220, 295, 313
CviKI_1 RGCY 7 cut(s) 107, 133, 147, 188, 220, 295, 313
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 195, 359
DpnII GATC 2 cut(s) 193, 357
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 38, 113, 181, 411
FaiI YATR 6 cut(s) 32, 36, 111, 179, 192, 409
FatI CATG 4 cut(s) 34, 109, 177, 407
FblI GTMKAC 2 cut(s) 79, 345
FriOI GRGCYC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 107, 188
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 329
Hin1II CATG 4 cut(s) 38, 113, 181, 411
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 240
HpaII CCGG 1 cut(s) 75
HphI GGTGA 3 cut(s) 52, 113, 268
Hpy166II GTNNAC 3 cut(s) 80, 346, 404
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 3 cut(s) 80, 346, 404
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 9, 17, 164
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 4 cut(s) 38, 113, 181, 411
Kzo9I GATC 2 cut(s) 193, 357
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 5 cut(s) 74, 88, 206, 302, 329
LweI GCATC 2 cut(s) 4, 225
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 195, 359
MboI GATC 2 cut(s) 193, 357
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 5 cut(s) 158, 165, 170, 250, 325
MnlI CCTC 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 138, 168
MslI CAYNNNNRTG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
NdeII GATC 2 cut(s) 193, 357
NlaIII CATG 4 cut(s) 38, 113, 181, 411
NspI RCATGY 1 cut(s) 38
PceI AGGCCT 1 cut(s) 188
PciI ACATGT 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 315
PscI ACATGT 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 138, 168
Sau3AI GATC 2 cut(s) 193, 357
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 315
SetI ASST 5 cut(s) 47, 135, 149, 222, 315
SfaNI GCATC 2 cut(s) 4, 225
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 137, 230
SmoI CTYRAG 2 cut(s) 137, 230
Sse9I AATT 5 cut(s) 158, 165, 170, 250, 325
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 1 cut(s) 63
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 196
TasI AATT 5 cut(s) 158, 165, 170, 250, 325
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 2 cut(s) 138, 168
Tru9I TTAA 2 cut(s) 138, 168
TspDTI ATGAA 4 cut(s) 58, 126, 194, 375
Van91I CCANNNNNTGG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 137
XapI RAATTY 2 cut(s) 158, 325
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 79, 345
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.