Rh7DG316300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000842
Physical Location & Seq
Reverse (-)
37139496 .. 37139882
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG316300.1

Sequence Viewer

Length: 387 bp
ATGGGCTGCGCTGCTGGTGAGAGGCCGGAGCCGTGCGCTGCAGGTGGGAGGCCGGTTTTAACTGCAATGATTAATAGGGCTTGCTTGAATCACTCCCCAGTTGGTGTTCAAATGGGTGCAGAAGGTTCCTCGATTTCACATCTATTGTTTGCTGATGATTCCCTCTTCTTTGTGAAGGCTTCTGTAGATAATTGTCAATCAATGATGACCATTCTGACTAACTACTGTACTCAGCGAGTCAATTTCAGCAAATCAAGTTTGTTTTTTAGTCTCAATACACCTCTAGAGCTTCAATTGAACATCAGCGATATTTTGGGTGTCCTGGCAAGTATCTTGGACTCCCTACTTTATGGGGAAGATCCAAAAAGCAGGCTTTGGCTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

128

Amino Acids

13.81

Weight (kDa)

5.16

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 353
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 4 cut(s) 88, 110, 293, 298
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 23, 50
ApeKI GCWGC 3 cut(s) 6, 11, 38
AseI ATTAAT 1 cut(s) 72
AspLEI GCGC 2 cut(s) 11, 38
AsuHPI GGTGA 1 cut(s) 29
BbvI GCAGC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 39, 183
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 7, 12, 39
BlsI GCNGC 3 cut(s) 8, 13, 40
Bme1390I CCNGG 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 30, 127
BmrFI CCNGG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 2 cut(s) 25, 52
BsiSI CCGG 2 cut(s) 26, 53
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 2 cut(s) 25, 52
Bsp143I GATC 1 cut(s) 358
BspANI GGCC 2 cut(s) 25, 52
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 30, 127
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 52
BssMI GATC 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 82, 371
BstDEI CTNAG 1 cut(s) 231
BstHHI GCGC 2 cut(s) 11, 38
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 2 cut(s) 39, 183
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 25, 52
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 82, 371
CfoI GCGC 2 cut(s) 11, 38
Cfr10I RCCGGY 1 cut(s) 52
Csp6I GTAC 1 cut(s) 228
CviJI RGCY 9 cut(s) 6, 25, 31, 52, 80, 179, 289, 373, 379
CviKI_1 RGCY 9 cut(s) 6, 25, 31, 52, 80, 179, 289, 373, 379
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 321
FaiI YATR 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 7, 12, 39
Fsp4HI GCNGC 3 cut(s) 7, 12, 39
FspBI CTAG 1 cut(s) 284
GlaI GCGC 2 cut(s) 10, 37
GluI GCNGC 3 cut(s) 7, 12, 39
HaeIII GGCC 2 cut(s) 25, 52
HapII CCGG 2 cut(s) 26, 53
HhaI GCGC 2 cut(s) 11, 38
Hin6I GCGC 2 cut(s) 9, 36
HinP1I GCGC 2 cut(s) 9, 36
HinfI GANTC 4 cut(s) 88, 158, 237, 338
HpaII CCGG 2 cut(s) 26, 53
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 116, 169
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 41, 65, 119
HpyF3I CTNAG 1 cut(s) 231
HspAI GCGC 2 cut(s) 9, 36
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 7 cut(s) 27, 39, 66, 111, 308, 335, 355
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 284
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 2 cut(s) 157, 368
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 358
MluCI AATT 3 cut(s) 190, 241, 293
MlyI GAGTC 2 cut(s) 246, 332
MnlI CCTC 5 cut(s) 15, 42, 139, 173, 291
MseI TTAA 2 cut(s) 59, 72
MspI CCGG 2 cut(s) 26, 53
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 323
NdeII GATC 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 30, 127
PaqCI CACCTGC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 88, 158
PkrI GCNGC 3 cut(s) 8, 13, 40
PleI GAGTC 2 cut(s) 245, 332
PpsI GAGTC 2 cut(s) 245, 332
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 30, 127
PstI CTGCAG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 59, 72
SatI GCNGC 3 cut(s) 7, 12, 39
Sau3AI GATC 1 cut(s) 358
SchI GAGTC 2 cut(s) 246, 332
ScrFI CCNGG 1 cut(s) 323
SetI ASST 4 cut(s) 46, 127, 283, 291
SfcI CTRYAG 2 cut(s) 39, 183
Sse9I AATT 3 cut(s) 190, 241, 293
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 131
TasI AATT 3 cut(s) 190, 241, 293
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 88, 158
Tru1I TTAA 2 cut(s) 59, 72
Tru9I TTAA 2 cut(s) 59, 72
TseI GCWGC 3 cut(s) 6, 11, 38
VspI ATTAAT 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 283
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.