Rmu_sc0004660.1_g000004

ribonuclease H protein At1g65750

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004660.1
OG0000842
Physical Location & Seq
Forward (+)
9564 .. 10376
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004660.1_g000004.1.cds

Sequence Viewer

Length: 813 bp
atggctgatgatcaaggctgtgagattggagttcggcctatgaaatacctgggccttcccttaggtggtaacccaaagcaagcttcattttggaacccagttgtagagagaattgagaagagattggagggttggaaaaaagcttttttgtcgagaggcggtaggctgacattgattcaagcagttctaagcagcctcccaacatactatttatctcttttccaaattccggtgggagtggcaaagaggttagaatctcttctgaaattttttttctgggatggagtcggagagggtaagaagaaccatctagttcattgggagatagtgttgaaaagcaaagaaagaggagggctgggaatcgggaatctactagcaaaaaataagtctttcctagggaaatggctttggagatttcctttggagagagagtgcttatggcatgctgtaatgaggagcaaatatggatataatgtgaatgggtgggacacaaagccaagtttgggtggatcaagtagaagcccttggaaggatatttcagcaggaataagccaatattctctctgtcataaactaattgtgggcaatggcaaaagagtgaggttctgggaagactcttggctagaggatcaacccttaaaattctactttccaaggttgttcagactatcaagacacaccaactattcagtggaaaggttagctatccctctcaattttccgatgagctgggattttgggttcagaagaaacttaaatgatcaagagattgaggagtttgcctcgctgatgattacgctagaaaatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

270

Amino Acids

31.24

Weight (kDa)

9.7

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AclWI GGATC 2 cut(s) 517, 636
AcsI RAATTY 3 cut(s) 225, 266, 641
AfiI CCNNNNNNNGG 4 cut(s) 65, 229, 503, 529
AgsI TTSAA 2 cut(s) 179, 334
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AloI GAACNNNNNNTCC 2 cut(s) 725, 757
AluBI AGCT 4 cut(s) 83, 143, 704, 729
AluI AGCT 4 cut(s) 83, 143, 704, 729
AlwI GGATC 2 cut(s) 517, 636
AoxI GGCC 2 cut(s) 35, 52
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 3 cut(s) 225, 266, 641
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 258
AspA2I CCTAGG 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 275, 315
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 2 cut(s) 10, 760
BfaI CTAG 5 cut(s) 311, 374, 395, 623, 800
BisI GCNGC 1 cut(s) 193
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 618
BplI GAGNNNNNCTC 2 cut(s) 767, 799
BsaJI CCNNGG 4 cut(s) 49, 394, 524, 653
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 416, 446
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 229, 503, 529
Bse1I ACTGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 4 cut(s) 49, 394, 524, 653
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 4 cut(s) 65, 229, 503, 529
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 3 cut(s) 363, 469, 788
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 2 cut(s) 355, 729
BshFI GGCC 2 cut(s) 37, 54
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 4 cut(s) 65, 229, 503, 529
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 2 cut(s) 37, 54
Bsp143I GATC 4 cut(s) 10, 509, 628, 760
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 37, 54
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 2 cut(s) 517, 636
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 49, 394, 524, 653
BssMI GATC 4 cut(s) 10, 509, 628, 760
BssT1I CCWWGG 3 cut(s) 394, 524, 653
Bst2UI CCWGG 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 113, 264
BstC8I GCNNGC 2 cut(s) 81, 444
BstDEI CTNAG 2 cut(s) 61, 188
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 4 cut(s) 13, 512, 631, 763
BstMBI GATC 4 cut(s) 10, 509, 628, 760
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 618
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 37, 54
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 2 cut(s) 81, 444
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 443
DdeI CTNAG 2 cut(s) 61, 188
DpnI GATC 4 cut(s) 12, 511, 630, 762
DpnII GATC 4 cut(s) 10, 509, 628, 760
Eam1104I CTCTTC 2 cut(s) 113, 264
EarI CTCTTC 2 cut(s) 113, 264
Eco130I CCWWGG 3 cut(s) 394, 524, 653
Eco81I CCTNAGG 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 3 cut(s) 394, 524, 653
ErhI CCWWGG 3 cut(s) 394, 524, 653
FaeI CATG 1 cut(s) 446
FaiI YATR 7 cut(s) 41, 205, 439, 444, 465, 471, 570
FaqI GGGAC 1 cut(s) 500
FatI CATG 1 cut(s) 442
FbaI TGATCA 2 cut(s) 10, 760
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 5 cut(s) 311, 374, 395, 623, 800
GluI GCNGC 1 cut(s) 193
GsaI CCCAGC 2 cut(s) 359, 733
HaeIII GGCC 2 cut(s) 37, 54
HapII CCGG 1 cut(s) 230
Hin1II CATG 1 cut(s) 446
HindIII AAGCTT 2 cut(s) 81, 141
HinfI GANTC 6 cut(s) 175, 254, 285, 360, 367, 614
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 6 cut(s) 264, 290, 665, 723, 746, 812
Hpy188III TCNNGA 4 cut(s) 153, 364, 672, 764
HpyAV CCTTC 2 cut(s) 65, 523
HpyF3I CTNAG 2 cut(s) 61, 188
Hsp92II CATG 1 cut(s) 446
Ksp22I TGATCA 2 cut(s) 10, 760
Kzo9I GATC 4 cut(s) 10, 509, 628, 760
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 35, 62, 111, 243, 262, 341, 528, 592, 715
Lsp1109I GCAGC 1 cut(s) 204
MaeI CTAG 5 cut(s) 311, 374, 395, 623, 800
MaeIII GTNAC 1 cut(s) 68
MalI GATC 4 cut(s) 12, 511, 630, 762
MboI GATC 4 cut(s) 10, 509, 628, 760
MboII GAAGA 5 cut(s) 130, 251, 313, 623, 759
MluCI AATT 6 cut(s) 111, 225, 266, 576, 641, 715
MlyI GAGTC 2 cut(s) 294, 608
MmeI TCCRAC 2 cut(s) 113, 268
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 638, 755
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 4 cut(s) 10, 509, 628, 760
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 446
PaeI GCATGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 4 cut(s) 175, 254, 360, 367
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 293, 608
PpsI GAGTC 2 cut(s) 293, 608
Psp6I CCWGG 1 cut(s) 48
PspEI GGTNACC 1 cut(s) 68
PspFI CCCAGC 2 cut(s) 355, 729
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 638, 755
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 4 cut(s) 10, 509, 628, 760
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 294, 608
ScrFI CCNGG 1 cut(s) 50
SphI GCATGC 1 cut(s) 446
Sse9I AATT 6 cut(s) 111, 225, 266, 576, 641, 715
SsiI CCGC 1 cut(s) 159
SspI AATATT 1 cut(s) 557
SspMI CTAG 5 cut(s) 311, 374, 395, 623, 800
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 3 cut(s) 394, 524, 653
TaqI TCGA 1 cut(s) 152
TasI AATT 6 cut(s) 111, 225, 266, 576, 641, 715
TfiI GAWTC 4 cut(s) 175, 254, 360, 367
Tru1I TTAA 2 cut(s) 638, 755
Tru9I TTAA 2 cut(s) 638, 755
TscAI CASTG 1 cut(s) 696
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 3 cut(s) 56, 75, 305
TspRI CASTG 1 cut(s) 696
XapI RAATTY 3 cut(s) 225, 266, 641
XceI RCATGY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmaJI CCTAGG 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 5 cut(s) 311, 374, 395, 623, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.