Prupe.7G038000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000842
Physical Location & Seq
Forward (+)
7043510 .. 7045415
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G038000.1

Sequence Viewer

Length: 642 bp
ATGACACATTCTTTTAAGTTCAAACTTGAGCACTCAAGAATTGTCATTACTTGCAATCAAGGAATAAATGTATTGTTCATTCCATGGATACGGTTATGTGGGCACAGCCAAGTGACTCACAACATAGAAAATGCAGAATTGAACCCATATACATCCAACATTTCCCTTATTTCCATCATGTATAACGTATTATGGAGAGACAGCATGTTACTGGTTATCCTGGATGGCACTAGATTGGTTCCCTCTAGGAGGGGCAACAGAAGGTGGAAGTTGGATCACTCTGGGTTATACTCGTGCCATTCTTTTTTAAATACTTGCGACACTTTGCAGAGGCATCGCCCCTTTATGTGCTTATCCCCTCACTGGTGCACTCTTTGCAATATGGACAGGGAAAGCGCGGATGATCTGTTCATTCACTGTCCCTACTCCTTAAAGGTGTGGTGGTCACTTCTGCAGGAAGTTAATGCTGCTTGGGTTATTCCTAAAGACTGCTTTCAGCTGTTATCCTACAAGATTGATGCGCTGGGTAGGGGGAAGAAAGCTAAAGTTCTATGGGGTTGCTTGGTGCATGCAGTGTTTTGGAACTTATGGGCTTCGGTTACTCCTGTTTTTAAGGATTTGGCCGTCTCTCCTATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.75

Weight (kDa)

8.96

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 398
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 249, 363
AgsI TTSAA 2 cut(s) 22, 142
AjnI CCWGG 1 cut(s) 219
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 499, 542
AluI AGCT 2 cut(s) 499, 542
Alw21I GWGCWC 2 cut(s) 33, 371
Alw26I GTCTC 2 cut(s) 192, 631
Alw44I GTGCAC 1 cut(s) 367
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 621
ApaLI GTGCAC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 2 cut(s) 398, 523
BaeGI GKGCMC 2 cut(s) 105, 371
BauI CACGAG 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 33, 371
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 182, 218
BceAI ACGGC 1 cut(s) 608
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 221
BciVI GTATCC 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 192, 631
BfaI CTAG 2 cut(s) 231, 246
BfmI CTRYAG 1 cut(s) 452
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 343, 508
BpuEI CTTGAG 2 cut(s) 19, 47
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 363
Bse1I ACTGG 2 cut(s) 216, 368
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 3 cut(s) 152, 229, 406
BseLI CCNNNNNNNGG 2 cut(s) 249, 363
BseNI ACTGG 2 cut(s) 216, 368
BseSI GKGCMC 2 cut(s) 105, 371
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 623
BsiHKAI GWGCWC 2 cut(s) 33, 371
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 249, 363
BsmAI GTCTC 2 cut(s) 192, 631
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 623
Bsp1286I GDGCHC 3 cut(s) 33, 105, 371
Bsp143I GATC 2 cut(s) 274, 403
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 623
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 456
BspPI GGATC 1 cut(s) 282
BsrI ACTGG 2 cut(s) 216, 368
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 2 cut(s) 274, 403
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 93, 419
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 152, 229, 406
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 2 cut(s) 398, 523
BstKTI GATC 2 cut(s) 277, 406
BstMAI GTCTC 2 cut(s) 192, 631
BstMBI GATC 2 cut(s) 274, 403
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 208, 572
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 452
BstSLI GKGCMC 2 cut(s) 105, 371
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 454
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 152, 229, 406
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 361, 415, 579
Cac8I GCNNGC 1 cut(s) 570
CfoI GCGC 2 cut(s) 398, 523
CviAII CATG 4 cut(s) 84, 178, 205, 569
CviJI RGCY 5 cut(s) 108, 499, 542, 593, 623
CviKI_1 RGCY 5 cut(s) 108, 499, 542, 593, 623
DpnI GATC 2 cut(s) 276, 405
DpnII GATC 2 cut(s) 274, 403
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 4 cut(s) 87, 181, 208, 572
FaqI GGGAC 1 cut(s) 405
FatI CATG 4 cut(s) 83, 177, 204, 568
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 139, 236, 413
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 231, 246
GlaI GCGC 2 cut(s) 397, 522
GluI GCNGC 1 cut(s) 468
GsaI CCCAGC 1 cut(s) 527
HaeIII GGCC 1 cut(s) 623
HhaI GCGC 2 cut(s) 398, 523
Hin1II CATG 4 cut(s) 87, 181, 208, 572
Hin6I GCGC 2 cut(s) 396, 521
HinP1I GCGC 2 cut(s) 396, 521
HinfI GANTC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 369
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 2 cut(s) 93, 419
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 8 cut(s) 54, 134, 328, 369, 378, 454, 568, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 87, 181, 208, 572
HspAI GCGC 2 cut(s) 396, 521
Kzo9I GATC 2 cut(s) 274, 403
LpnPI CCDG 9 cut(s) 197, 206, 233, 267, 349, 373, 440, 509, 618
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 343, 508
MaeI CTAG 2 cut(s) 231, 246
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 4 cut(s) 112, 207, 444, 598
MalI GATC 2 cut(s) 276, 405
MboI GATC 2 cut(s) 274, 403
MboII GAAGA 1 cut(s) 547
MhlI GDGCHC 3 cut(s) 33, 105, 371
MluCI AATT 2 cut(s) 39, 137
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 180, 252
MnlI CCTC 4 cut(s) 243, 253, 324, 369
MseI TTAA 5 cut(s) 15, 308, 431, 462, 612
MspA1I CMGCKG 1 cut(s) 499
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 375
NcoI CCATGG 1 cut(s) 83
NdeII GATC 2 cut(s) 274, 403
NlaIII CATG 4 cut(s) 87, 181, 208, 572
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 112, 444
NspI RCATGY 2 cut(s) 208, 572
PaeI GCATGC 1 cut(s) 572
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 240
PstI CTGCAG 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 499
SaqAI TTAA 5 cut(s) 15, 308, 431, 462, 612
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 274, 403
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 33, 105, 371
SetI ASST 5 cut(s) 189, 266, 438, 501, 544
SfaNI GCATC 2 cut(s) 343, 508
SfcI CTRYAG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 26, 34
SmoI CTYRAG 2 cut(s) 26, 34
SphI GCATGC 1 cut(s) 572
Sse9I AATT 2 cut(s) 39, 137
SsiI CCGC 1 cut(s) 398
SspMI CTAG 2 cut(s) 231, 246
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 93, 419
TaiI ACGT 1 cut(s) 189
TasI AATT 2 cut(s) 39, 137
Tru1I TTAA 5 cut(s) 15, 308, 431, 462, 612
Tru9I TTAA 5 cut(s) 15, 308, 431, 462, 612
TscAI CASTG 3 cut(s) 368, 422, 579
TseFI GTSAC 2 cut(s) 112, 444
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 112, 444
TspDTI ATGAA 2 cut(s) 67, 400
TspRI CASTG 3 cut(s) 368, 422, 579
VneI GTGCAC 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 247
XceI RCATGY 2 cut(s) 208, 572
XspI CTAG 2 cut(s) 231, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.