RchiOBHm_Chr5g0032951

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000842
Physical Location & Seq
Forward (+)
26765202 .. 26765785
584 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31207

Sequence Viewer

Length: 408 bp
ATGTGTGATTGGCCATTCGAAATTTTTTGGAAAAGGGAGAGAGTTGGGATGAGTCCAATTTCACTCATGTACGTATGTCTCATTCCAAAGATTAAAACTGATGCTTCACATTTTCATCTAATAGCACTTTGTAATGTGATTTACAGAATCTGCTCAAAGGTGGTGGCTAATAGACTAAAAAAGTGGTTGCCTGAAATCATCTCACCTCTTCAGAGTGCCTACGTACTAGGCAGACTGATTTCAGATAACACTCTAGTAGCTATAGAAGTTGCTCATTTTATGTACAAGTTGCGAACACAAGCAGAAGGTTTCTTCTCTTTGAAGTTGGACATCAGCAAGGCCTATGATCATCTTGAATGGTCTTTTTTGCAGGCTATACTCACCAAGTTGGGTTTTGCTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

135

Amino Acids

15.63

Weight (kDa)

9.12

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 32 - 133 3.5e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 3 cut(s) 71, 225, 284
AgsI TTSAA 2 cut(s) 322, 356
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 150
AoxI GGCC 2 cut(s) 11, 339
ApoI RAATTY 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 195, 373
AsuII TTCGAA 1 cut(s) 18
BalI TGGCCA 1 cut(s) 13
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 3 cut(s) 227, 254, 406
BfmI CTRYAG 1 cut(s) 261
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 18
BsaAI YACGTR 2 cut(s) 73, 223
BseGI GGATG 1 cut(s) 54
BshFI GGCC 2 cut(s) 13, 341
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 2 cut(s) 13, 341
Bsp119I TTCGAA 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 346
BspANI GGCC 2 cut(s) 13, 341
BspT104I TTCGAA 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 282
BssMI GATC 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 2 cut(s) 73, 223
BstBI TTCGAA 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 372
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 261
BstSNI TACGTA 2 cut(s) 73, 223
BsuRI GGCC 2 cut(s) 13, 341
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 150
Csp6I GTAC 3 cut(s) 70, 224, 283
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 13, 167, 260, 341, 374
CviKI_1 RGCY 5 cut(s) 13, 167, 260, 341, 374
CviQI GTAC 3 cut(s) 70, 224, 283
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco105I TACGTA 2 cut(s) 73, 223
Eco147I AGGCCT 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 68, 76, 263, 281, 345, 377
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 346
FokI GGATG 1 cut(s) 61
FspBI CTAG 3 cut(s) 227, 254, 406
HaeIII GGCC 2 cut(s) 13, 341
Hin1II CATG 1 cut(s) 70
HinfI GANTC 2 cut(s) 52, 147
HphI GGTGA 2 cut(s) 195, 373
Hpy188I TCNGA 2 cut(s) 213, 244
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 72, 222
HpyCH4V TGCA 1 cut(s) 370
HpySE526I ACGT 2 cut(s) 72, 222
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 2 cut(s) 204, 356
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 227, 254, 406
MaeII ACGT 2 cut(s) 72, 222
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 200, 304
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 2 cut(s) 21, 57
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 1 cut(s) 216
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
MseI TTAA 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 13
NdeII GATC 1 cut(s) 346
NlaIII CATG 1 cut(s) 70
NspV TTCGAA 1 cut(s) 18
PceI AGGCCT 1 cut(s) 341
PfeI GAWTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Ppu21I YACGTR 2 cut(s) 73, 223
PstNI CAGNNNCTG 1 cut(s) 150
RsaI GTAC 3 cut(s) 71, 225, 284
RsaNI GTAC 3 cut(s) 70, 224, 283
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 1 cut(s) 61
SetI ASST 6 cut(s) 75, 162, 208, 225, 262, 310
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 18
SnaBI TACGTA 2 cut(s) 73, 223
Sse9I AATT 2 cut(s) 21, 57
SseBI AGGCCT 1 cut(s) 341
SspMI CTAG 3 cut(s) 227, 254, 406
StuI AGGCCT 1 cut(s) 341
TaiI ACGT 2 cut(s) 75, 225
TaqI TCGA 1 cut(s) 18
TasI AATT 2 cut(s) 21, 57
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 104
XapI RAATTY 1 cut(s) 21
XspI CTAG 3 cut(s) 227, 254, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.