Rmu_sc0029950.1_g000001

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029950.1
OG0000842
Physical Location & Seq
Reverse (-)
1146 .. 1850
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029950.1_g000001.1.cds

Sequence Viewer

Length: 705 bp
atggcatcccccagttcaaatgtcttattggagaatgacaggaagatcaaggaagaactagctcaagtttacagagatgaggaactttttttggcccaaaaggcaaaggcaaactggctctcgctgggtgataaaaacactagattctttcaaacccaagtcaacatcagaaggaaacaaaaccacattaatggagtcaaggacaccagaggaatctggcttgacgaccctgttcaaatctcagcgttctttatccaagaatttaaatcgagatttacttgtaatagtcaaccaagtctggccgatatcaacaacttcattacacatatacctgaatgcattactaatgaagataatgatctcttactgaagcaagtgatagaagaggaaatctggaaagccctcaattcaattggtccaatcaaagctctaggacccgatggtctgcatgcaatgttctaccagaagtgctggaacaaggtaaggtcaactgtcattcccataataaaaggtttctttgcttcaaatacacctttagctgacctcaaccatacaaatatagcccttatccctaaggtggagaaccctgaatttgtctctcaatttcaacctatcagcttgtgtaatgttagttacacgatcatcaccaaaatcctaattaataggctgggacccttgttggagaaatgcatctccaaaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

234

Amino Acids

26.7

Weight (kDa)

8.23

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 260, 590
AcuI CTGAAG 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 577
AgsI TTSAA 6 cut(s) 18, 152, 236, 411, 525, 608
AluBI AGCT 4 cut(s) 62, 428, 539, 618
AluI AGCT 4 cut(s) 62, 428, 539, 618
Alw26I GTCTC 1 cut(s) 601
AoxI GGCC 2 cut(s) 93, 300
ApoI RAATTY 2 cut(s) 260, 590
AseI ATTAAT 2 cut(s) 189, 660
AspS9I GGNCC 4 cut(s) 94, 416, 434, 671
AsuHPI GGTGA 2 cut(s) 140, 637
AvaII GGWCC 3 cut(s) 416, 434, 671
AxyI CCTNAGG 1 cut(s) 573
BccI CCATC 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 3 cut(s) 59, 141, 431
BglI GCCNNNNNGGC 1 cut(s) 101
Bme18I GGWCC 3 cut(s) 416, 434, 671
BmgT120I GGNCC 4 cut(s) 94, 416, 434, 671
BmiI GGNNCC 3 cut(s) 436, 672, 673
BmrI ACTGGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 14, 699
BmuI ACTGGG 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 577
Bse1I ACTGG 2 cut(s) 12, 119
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 357
BseGI GGATG 1 cut(s) 5
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 577
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 12, 119
BseYI CCCAGC 2 cut(s) 124, 667
BshFI GGCC 2 cut(s) 95, 302
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 684
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 2 cut(s) 95, 302
Bsp143I GATC 3 cut(s) 45, 358, 639
BspANI GGCC 2 cut(s) 95, 302
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 436, 672, 673
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 2 cut(s) 12, 119
BssMI GATC 3 cut(s) 45, 358, 639
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 241, 573
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 3 cut(s) 48, 361, 642
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 3 cut(s) 45, 358, 639
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 2 cut(s) 95, 302
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 94, 416, 434, 671
CviAII CATG 1 cut(s) 449
DdeI CTNAG 2 cut(s) 241, 573
DpnI GATC 3 cut(s) 47, 360, 641
DpnII GATC 3 cut(s) 45, 358, 639
DraI TTTAAA 1 cut(s) 265
DrdI GACNNNNNNGTC 1 cut(s) 441
DseDI GACNNNNNNGTC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 3 cut(s) 416, 434, 671
Eco57I CTGAAG 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 573
EcoO109I RGGNCCY 2 cut(s) 434, 671
EcoRV GATATC 1 cut(s) 307
EcoT22I ATGCAT 2 cut(s) 341, 692
FaeI CATG 1 cut(s) 452
FaiI YATR 6 cut(s) 327, 329, 450, 503, 552, 560
FaqI GGGAC 1 cut(s) 684
FatI CATG 1 cut(s) 448
FspBI CTAG 3 cut(s) 59, 141, 431
GsaI CCCAGC 2 cut(s) 128, 671
HaeIII GGCC 2 cut(s) 95, 302
Hin1II CATG 1 cut(s) 452
HincII GTYRAC 3 cut(s) 163, 290, 489
HindII GTYRAC 3 cut(s) 163, 290, 489
HinfI GANTC 3 cut(s) 144, 195, 213
HphI GGTGA 2 cut(s) 140, 637
Hpy166II GTNNAC 4 cut(s) 70, 163, 290, 489
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 270, 394
Hpy8I GTNNAC 4 cut(s) 70, 163, 290, 489
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 339, 448, 452, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 241, 573
Hsp92II CATG 1 cut(s) 452
KflI GGGWCCC 1 cut(s) 671
Kzo9I GATC 3 cut(s) 45, 358, 639
LweI GCATC 2 cut(s) 14, 699
MaeI CTAG 3 cut(s) 59, 141, 431
MaeIII GTNAC 1 cut(s) 632
MalI GATC 3 cut(s) 47, 360, 641
MboI GATC 3 cut(s) 45, 358, 639
MboII GAAGA 4 cut(s) 55, 65, 362, 395
MfeI CAATTG 1 cut(s) 411
MluCI AATT 7 cut(s) 260, 406, 411, 590, 602, 657, 700
MlyI GAGTC 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 5 cut(s) 73, 203, 379, 413, 554
Mph1103I ATGCAT 2 cut(s) 341, 692
MseI TTAA 4 cut(s) 189, 264, 660, 703
MslI CAYNNNNRTG 1 cut(s) 189
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 3 cut(s) 45, 358, 639
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 3 cut(s) 436, 672, 673
NsiI ATGCAT 2 cut(s) 341, 692
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 144, 213
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 2 cut(s) 434, 671
PshBI ATTAAT 2 cut(s) 189, 660
Psp5II RGGWCCY 2 cut(s) 434, 671
PspFI CCCAGC 2 cut(s) 124, 667
PspN4I GGNNCC 3 cut(s) 436, 672, 673
PspPI GGNCC 4 cut(s) 94, 416, 434, 671
PspPPI RGGWCCY 2 cut(s) 434, 671
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 4 cut(s) 189, 264, 660, 703
Sau3AI GATC 3 cut(s) 45, 358, 639
Sau96I GGNCC 4 cut(s) 94, 416, 434, 671
SchI GAGTC 1 cut(s) 204
SfaNI GCATC 2 cut(s) 14, 699
SinI GGWCC 3 cut(s) 416, 434, 671
SmiI ATTTAAAT 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SphI GCATGC 1 cut(s) 452
Sse9I AATT 7 cut(s) 260, 406, 411, 590, 602, 657, 700
SspMI CTAG 3 cut(s) 59, 141, 431
SwaI ATTTAAAT 1 cut(s) 265
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 269
TasI AATT 7 cut(s) 260, 406, 411, 590, 602, 657, 700
TfiI GAWTC 2 cut(s) 144, 213
Tru1I TTAA 4 cut(s) 189, 264, 660, 703
Tru9I TTAA 4 cut(s) 189, 264, 660, 703
TspDTI ATGAA 2 cut(s) 307, 363
VpaK11BI GGWCC 3 cut(s) 416, 434, 671
VspI ATTAAT 2 cut(s) 189, 660
XapI RAATTY 2 cut(s) 260, 590
XceI RCATGY 1 cut(s) 452
XspI CTAG 3 cut(s) 59, 141, 431
Zsp2I ATGCAT 2 cut(s) 341, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.