Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000842

Physical Location & Seq

Genomic Coordinates Reverse (-)

31414123 .. 31415255

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGCAGTTCTTGTAATGTTAAGTAATGATGCATCTCTTCCTCCGCTGGGAAAACCTGCATTTCTAGTGAAGAAAGCTGGTACCAATGAAGATAATTCTATGAATTATGTGGCATGTACTATTGTAAGAGCTCGGTCGAGGCCAACAGTGCATCCGCCTCCTTATCCGTCCTTAGAGATGAATTTCAATGGCTCTGTTCACCCCAATCATAAAGCTGCAACGGGTTTTTTGATTCGTAATGTTCATGGTTCTCCTATCCTATCTAGGATTTATGGACATCTTTATAGCGGAGGCACTGGCACTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

103

Amino Acids

11.0

Weight (kDa)

9.8

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica	MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica	Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis	pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis	RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora	Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana	Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	3 cut(s)	47, 158, 291
AcsI	RAATTY	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	309
AfaI	GTAC	2 cut(s)	85, 121
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	3 cut(s)	80, 134, 218
AluI	AGCT	3 cut(s)	80, 134, 218
Alw21I	GWGCWC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	68, 267
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	3 cut(s)	22, 44, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	136
BspACI	CCGC	3 cut(s)	47, 158, 291
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	156, 297
BveI	ACCTGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	84, 120
CviAII	CATG	2 cut(s)	117, 248
CviJI	RGCY	5 cut(s)	80, 134, 145, 195, 218
CviKI_1	RGCY	5 cut(s)	80, 134, 145, 195, 218
CviQI	GTAC	2 cut(s)	84, 120
DdeI	CTNAG	1 cut(s)	175
DraIII	CACNNNGTG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	2 cut(s)	120, 251
FaiI	YATR	7 cut(s)	104, 111, 118, 213, 249, 276, 288
FatI	CATG	2 cut(s)	116, 247
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	68, 267
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	120, 251
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	35, 62, 154, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	120, 251
KpnI	GGTACC	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	35, 66, 72, 285
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	22, 44, 163
MaeI	CTAG	2 cut(s)	68, 267
MboII	GAAGA	3 cut(s)	32, 85, 104
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	97, 106, 184
MnlI	CCTC	4 cut(s)	54, 135, 171, 287
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	120, 251
NlaIV	GGNNCC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	85, 121
RsaNI	GTAC	2 cut(s)	84, 120
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	61, 82, 136, 220
SfaNI	GCATC	3 cut(s)	22, 44, 163
Sse9I	AATT	3 cut(s)	97, 106, 184
SsiI	CCGC	3 cut(s)	47, 158, 291
SspMI	CTAG	2 cut(s)	68, 267
SstI	GAGCTC	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	97, 106, 184
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	156, 304
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	105, 119, 197, 236
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	156, 304
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	2 cut(s)	68, 267
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.