MD09G1232900.v1.1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000842
Physical Location & Seq
Forward (+)
29206780 .. 29209387
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1232900.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGAAAGAAATAATTTAGTGTTCAAAAGTGTGCCCCCGGCCCCGGCGCGTTGTGTTTCTATCGCCGGTAGTGTTAGTTCGGCTTTTCTGAAGGCTAATGGGAAGTGTGACCCCACTGAGGCCTTACCTATCTCTTCCTTTATTAAATGGCATCCTCCTGAGCAGCATGATGTGATTAAACTCAATTTTGATGGTTCAGTTTCGAACAACCGTGCTACTCCTACCTTTGTGCTCCGTAATAGTAATTCACAGGTGATTCAGGCAGTGGTCTTAATCTTGATGGCACTACTATTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCCH

Protein Analysis

100

Amino Acids

10.82

Weight (kDa)

9.59

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 43, 118
AgsI TTSAA 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 234
AoxI GGCC 2 cut(s) 39, 120
ApeKI GCWGC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 2 cut(s) 38, 44
AsuHPI GGTGA 1 cut(s) 265
AsuII TTCGAA 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 185, 274
BcnI CCSGG 2 cut(s) 38, 44
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 38, 44
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 2 cut(s) 38, 44
BmsI GCATC 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 38, 44
BsaJI CCNNGG 2 cut(s) 36, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 118
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 36, 42
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 43, 118
BseMII CTCAG 2 cut(s) 108, 150
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 41, 122
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 38, 44, 66
BslI CCNNNNNNNGG 2 cut(s) 43, 118
BsnI GGCC 2 cut(s) 41, 122
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 36, 234
BspANI GGCC 2 cut(s) 41, 122
BspCNI CTCAG 2 cut(s) 109, 151
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 36, 42
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 117, 159
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 36, 42
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 41, 122
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 114, 270
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 1 cut(s) 167
CviJI RGCY 4 cut(s) 41, 83, 95, 122
CviKI_1 RGCY 4 cut(s) 41, 83, 95, 122
DdeI CTNAG 2 cut(s) 117, 159
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 110
FaeI CATG 1 cut(s) 170
FaiI YATR 1 cut(s) 168
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 164
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 41, 122
HapII CCGG 3 cut(s) 38, 44, 66
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 256
HpaII CCGG 3 cut(s) 38, 44, 66
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 158, 277
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 117, 159
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 6 cut(s) 51, 57, 79, 171, 236, 245
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 36, 234
MluCI AATT 3 cut(s) 13, 184, 244
MnlI CCTC 2 cut(s) 112, 165
MseI TTAA 3 cut(s) 144, 177, 272
MspI CCGG 3 cut(s) 38, 44, 66
MspR9I CCNGG 2 cut(s) 38, 44
MvnI CGCG 1 cut(s) 49
NciI CCSGG 2 cut(s) 38, 44
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 203
PceI AGGCCT 1 cut(s) 122
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
SaqAI TTAA 3 cut(s) 144, 177, 272
SatI GCNGC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 38, 44
SduI GDGCHC 2 cut(s) 36, 234
SetI ASST 3 cut(s) 130, 227, 255
SfaNI GCATC 1 cut(s) 160
SfuI TTCGAA 1 cut(s) 203
Sse9I AATT 3 cut(s) 13, 184, 244
SseBI AGGCCT 1 cut(s) 122
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 36, 42
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 13, 184, 244
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 144, 177, 272
Tru9I TTAA 3 cut(s) 144, 177, 272
TscAI CASTG 2 cut(s) 121, 270
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 121, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.